Accurate calculation of N1s and C1s core electron binding energies of substituted pyridines. Correlation with basicity and with Hammett substituent constants

Substituent shifts of the energetics of four related ionization processes of pyridines and benzoic acids (Fig. 1) were investigated. The first process is core-electron ionization of gas-phase pyridines (Fig. 1A), while the second concerns gas-phase acid-base reaction between a substituted pyridine and a conjugated acid (Fig. 1B), and the third and fourth processes are the acid dissociation of substituted benzoic acids in aqueous solution (Fig. 1C) and in vacuum (Fig. 1D), respectively. Core-electron binding energies for the first process were calculated using density-functional theory with the scheme ΔE_KS (PW86x-PW91c/TZP+C_rel)//HF/6-31G*. Average absolute deviation of calculated core electron binding energy shifts at N atom in substituted pyridines from experiment was 0.08 eV. The shift at N coincides highly with that at a ring carbon atom. The four shifts corresponding to the four processes shown in Figs. 1A–D correlate strongly with one another, with numerical values fairly close to each other when expressed in unit of electron volts.     

Mass spectrometric studies on the effect of sidechains of N-acetylamino acid methyl esters and N-methylamides on their photoionisation

Photoionisation mass spectra of N-methylamides of N-acetyl derivatives of the following amino acids have been studied: alanine, valine, leucine, serine, threonine, phenylalanine, tyrosine, tryptophan and proline. The study also included methyl esters of N-acetyl tyrosine, N-acetyl phenyl alanine and N-trideuteroacetyl phenylalanine. The photon energies were within the range of 7.5 to 13.0 eV. The appearance potentials of the main ions were also determined. The compounds under study contain CH? CO, CO? NH and N? C_α bonds as well as sidechains and may therefore be regarded as models of short peptides. Under photoionisation conditions, decomposition of compounds containing aliphatic sidechains involves mainly CH? CO bonds; the appearance potentials of the corresponding fragments decrease with an increase in the size of sidechain. The presence of hydroxyl in the sidechain results in an increase in the appearance potential of a fragment formed due to CH? CO bond rupture, whereas the presence of an aromatic moiety favours an even greater increase in the appearance potential and results in predominant rupture of the N? C_α bond. Analysis of the mass spectra obtained confirms the conclusion made previously that application of the photoionisation technique enables one to increase considerably the relative intensity of characteristic peaks and to suppress secondary process taking place upon ionisation by the electrons with energy values of the order of 70 eV.     

The fragmentations of substituted cinnamic acids after electron impact

The fragmentations of a number of cinnamic acids substituted at the phenyl ring have been studied with the aid of 70 eV mass spectra and mass analysed ion kinetic energy spectra. Evidence is presented that the formation of [C₉H₇O₂]⁺ ions occurs by intramolecular aromatic substitution reactions. A mechanism is proposed for the energetically favourable loss of the substituents from meta and para positions of the phenyl ring. The analytical use of intramolecular aromatic substitution reactions is briefly discussed.     

Investigation of spectroscopic studies and DFT calculations on glucofuranose derivatives of dithiophosphonates

Abstract

2,4-Bis(4-methoxyphenyl)-1,3,2,4-dithiadiphosphetane-2,4-disulfide (Lawesson’s reagent: LR) was reacted with 1,2:5,6-di-O-cyclohexylidene-α-D-glucofuranose and 1,2:5,6-di-O-isopropylidene-α-D-glucofuranose in toluene and gave rise to crude dithiophosphonic acids. The crude dithiophosphonic acids were treated with excess triethylamine and the triethylammonium salts of dithiophosphonic acids (1) and (2) were isolated by crystallization method. Compounds 1 and 2 were characterized by elemental analysis, IR, and NMR (¹H-, ¹³C- and ³¹P-) spectroscopies and mass spectrometry. In addition, NMR spectra, the electronic properties (the electronic chemical potential, electronegativity, chemical hardness and the global electrophilicity index) and NBO analysis of compound 2 have been calculated by using the Gaussian 16?W program. The electronic properties were calculated using Highest Occupied Molecular Orbital (HOMO) and Lowest Unoccupied Molecular Orbital (LUMO) energies by density functional method (DFT/B3LYP) at 6-31G(d,p) level. The HOMO and LUMO energies are ?5.9 and ?0.72?eV, respectively. The HOMO–LUMO energy difference is 5.18?eV and this value shows that compound 2 has a high stability and low reactivity.     

A study on optical limiting properties of Eosin-Y and Eriochrome Black-T dye-doped poly (vinyl alcohol) composite film

A poly (vinyl alcohol) PVA/Eriochrome Black-T (EBT) dye, and PVA/Eosin-Y (EY) dye composite film was prepared using a solution casting process. The dye-doped composite polymer films were characterized by UV–vis spectroscopy. An optical band gap (E_g) of pure PVA reduced from 4.22?eV to 2.80?eV for PVA/EBT film and 2.14?eV for PVA/EY film respectively. This result indicates the occurrence of inter-molecular hydrogen bonding between the –OH functional group in PVA chains and sulfonate (EBT) and carboxyl group (EY) in dye molecules, respectively. Moreover, the experimental result of PVA/EBT and PVA/EY composite film showed the excellent properties of a large scale cut-off filter in the ultraviolet and visible range region.     

Autoradiolysis of the 2-deoxy-2-[<Superscript>18</Superscript>F]fluoro-D-glucose radiopharmaceutical

Summary To control virtually the toxic compounds and to improve quality control of the solution of 2-deoxy-2-[¹⁸F]fluoro-d-glucose (2-[¹⁸F]FDG), the products of its autoradiolysis were analyzed by high-performance liquid chromatography with electrospray mass spectrometric and radiometric detectors (HPLC/MS/RAD), thin layer chromatography on TLC silica plate and HPTLC on amino modified silica plate. Except Kryptofix^™ 2.2.2, glucose and fluoride anion, no by-products and impurities were observed by LC/MS analysis of fresh 2-[¹⁸F]FDG samples. The analysis performed in the time interval of 6 to 48 hours after the end of 2-[¹⁸F]FDG synthesis indicated that the activity of the autoradiolysis products separated by HPLC did not exceed 1.3%. As the main autoradiolysis products of 3.3 ^. 10^-5 to 4.4 ^. 10^-5M 2-[¹⁸F]FDG solution of original specific activity 0.5-1.5 GBq ^. cm^-3 were established: arabinose - 2.8 μM (G= 0.07/100 eV), gluconic and glucuronic acids 1.8-0.5 μM (G =0.01-0.05/100 eV), arabinose and araburonic acids occurred under 0.5 μM concentration at residual glucose contents about 0.14 mM. Radiation chemical yields of active products were calculated from molar activity of 2-[¹⁸F]FDG and the percentage of their activity: 0.5% radiochemical yield of 2-[¹⁸F]fluoroglucuronic acid corresponds to the G = 0.004/100 eV and 0.3% yield of 2-[¹⁸F]fluorogluconic acid issues G = 0.003/100 eV.     

Electronic energy states of certain sensitizers and dielectrics

Abstract— The electron affinities and ionization potentials of amorphous sulfur, vitreous selenium and several phthalocyanines were measured by Nelson's electron beam retardation method and photoelectric emission, respectively. The electron affinities (A_c) measured were: 4.5 eV for sulfur, 3.4eV for selenium, and approximately 4.3 eV for all the phthalocyanines measured. Photoemission thresholds (I_c) were 7.0 eV for sulfur and 6.0 eV for selenium. Two photoionization thresholds (at about 5.2 and 6.1 eV) were found for both α-copper and α-metal-free phthalocyanine; the former is attributed to impurity levels, the latter to bulk states. In each case, the band gap calculated from I_c and A_c was found to be approximately equal to the optical threshold for photoconductivity.     

Reaction dynamics of the dichlorocarbene anion using tandem mass spectrometry

The dissociation dynamics of CCl₂^? anions were studied under various internal energy conditions. This study involved the measurement of daughter-ion spectra and branching ratios and of the amount of kinetic energy released (KER) on the fragments. The competition between C and Cl loss for CCl₂^? ions created by any of the following sequence of processes: (1) was particularly investigated. For process (1), the amount of fragmenting CCl₂^? ions is 8–10 times larger with Kr than with Xe or C₆H₆. The KER for Cl loss is smaller than 0.20 eV with the three target gases used. For the loss of C, the KER is much larger (0.7 eV). This KER is, however, equal to 0.21 eV for the collisionally activated C loss in process (2). For this latter process, the C loss vs. Cl loss branching ratio decreases with increasing internal energy. The KERs measured for process (3) are very similar to those obtained for process (1). It is suggested that repulsive or slightly bound excited states which correlate directly to the Cl₂^? (X²Σ_u⁺) + C asymptote and which are vibronically coupled to the ground state play an important role in these dissociation processes.     

Determination of resin acids in pulp mill EOP bleaching process effluent

Resin acids are tricyclic diterpenoids which are natural constituents of the wood from conifers. They are released from the wood during the manufacture of pulp and paper. These acids are very resistant to chemical degradation and survive the pulping and also the EOP bleaching process (EOP=alkaline extraction, oxygen and peroxide, the chemicals used in the bleaching process). Resin acids were extracted from alkaline medium using liquid–liquid extraction with t-butyl methyl ether and solid phase extraction with RP C18 adsorbent and a highly porous polystyrene-divinylbenzene polymer. After conversion of the acids to their pentafluorobenzyl esters, the extracts were analysed by GC/MS using a 25 m OV17 capillary column. Recovery values for single resin acids were determined by all three extraction methods. The solid phase extraction methods were applied to the analysis of the EOP effluent from a pulp mill bleaching process. 14 different resin acids and one resin acid methyl ester have been identified in the effluent. One of these was an oxo resin acid which might well be a product of the bleaching process.     

Single and Double Ionization of Corannulene and Coronene

Electron‐transfer processes that involve single and doubly charged cations of corannulene (C₂₀H₁₀) and coronene (C₂₄H₁₂) are examined by three different mass‐spectrometric techniques. Photoionization studies give first‐ionization energies of IE(C₂₀H₁₀)=7.83±0.02 eV and IE(C₂₄H₁₂)=7.21 ±0.02 eV. Photoionizations of the neutrals to the doubly charged cations occur at thresholds of 20.1±0.2 eV and 18.5±0.2 eV for corannulene and coronene, respectively. Energy‐resolved charge‐stripping mass spectrometry yields kinetic energy deficits of Q_min(C₂₀H=13.8±0.3 eV and Q_min(C₂₄H=12.8±0.3 eV for the transitions from the mono‐ to the corresponding dications in keV collisions. Reactivity studies of the C₂₀H and C₂₄H dications in a selected‐ion flow‐tube mass spectrometer are used to determine the onsets for the occurrence of single‐electron transfer from several neutral reagents to the dications, affording two different monocationic products. With decreasing IEs of the neutral reagents, electron transfer to doubly charged corannulene is first observed with hexafluorobenzene (IE=9.91 eV), while neutrals with lower IEs are required in the case of the coronene dication, e.g., NO₂ (IE=9.75 eV). Density‐functional theory is used to support the interpretation of the experimental data. The best estimates of the ionization energies evaluated are IE(C₂₀H₁₀)=7.83±0.02 eV and IE(C₂₄H₁₂)=7.21 ±0.02 eV for the neutral molecules, and IE(C₂₀H)=12.3±0.2 eV and IE(C₂₄H)=11.3±0.2 eV for the monocations.     

Forward Electron Scattering in Benzene; Forbidden Transitions and Excitation Functions

A systematic study of vibronic excitation in benzene via forward electron scattering was carried out using a novel type of a trochoidal electron spectrometer. Energy-loss spectra in the energy range 1.0–9.5 eV, with residual energies 0.03–20 eV as well as excitation functions for individual vibrational levels of some of the triplet and singlet states are presented and discussed. Following observations were made. (1) A new s-type Rydberg series with quantum defect δ = 0.86. (2) Additional information on the complex 6–6.5 eV band. (3) A new core excited shape resonance at 6.5 eV. (4) A narrow Feshbach resonance at 5.87 eV, The new spectrometer is suggested as a tool for routine study of forbidden transitions and negative ion states in organic molecules.     

Decomposition of Picolyl Radicals at High Temperature: A Mass Selective Threshold Photoelectron Spectroscopy Study

The reaction products of the picolyl radicals at high temperature were characterized by mass-selective threshold photoelectron spectroscopy in the gas phase. Aminomethylpyridines were pyrolyzed to initially produce picolyl radicals (m/z=92). At higher temperatures further thermal reaction products are generated in the pyrolysis reactor. All compounds were identified by mass-selected threshold photoelectron spectroscopy and several hitherto unexplored reactive molecules were characterized. The mechanism for several dissociation pathways was outlined in computations. The spectrum of m/z=91, resulting from hydrogen loss of picolyl, shows four isomers, two ethynyl pyrroles with adiabatic ionization energies (IE_ad) of 7.99 eV (2-ethynyl-1H-pyrrole) and 8.12 eV (3-ethynyl-1H-pyrrole), and two cyclopentadiene carbonitriles with IE′s of 9.14 eV (cyclopenta-1,3-diene-1-carbonitrile) and 9.25 eV (cyclopenta-1,4-diene-1-carbonitrile). A second consecutive hydrogen loss forms the cyanocyclopentadienyl radical with IE′s of 9.07 eV (T₀) and 9.21 eV (S₁). This compound dissociates further to acetylene and the cyanopropynyl radical (IE=9.35 eV). Furthermore, the cyclopentadienyl radical, penta-1,3-diyne, cyclopentadiene and propargyl were identified in the spectra. Computations indicate that dissociation of picolyl proceeds initially via a resonance-stabilized seven-membered ring.     

Structural and electronic properties of infinite cis and trans polyenes: Perturbation theory of electron correlation effects

The geometrical structure of five infinite polyene models (equidistant and alternating trans, equidistant cis, cis-transoid, and trans-cisoid) have been optimized using three different atomic basis sets at the Hartree–Fock level and by including electron correlation effects within the second order of Møller–Plesset perturbation theory. The single-particle energy bands have also been corrected for correlation effects applying the electron polaron method. Bond alternation has always reduced the energy (both for trans and cis) polyenes but this stabilization energy has decreased with an increasing basis set and has saturated about 3 mH for trans and trans-cisoid and about 7.5 mH for the cis-transoid model. On the absolute energy scale, however, the alternating trans structure has always turned out to be more stable than either the cis-transoid or the trans-cisoid one. The energetic order is in all cases trans < cis-transoid < trans-cisoid. Using the largest basis set with correlation, the corresponding energy differences are ΔE(trans → cis-transoid) = 1.69 mH and ΔE(trans → trans-cisoid) = 6.12 mH, respectively. The HF values of the valence-band widths vary in the region of 4–6 eV for the cis models and about 7 eV for the trans one. Correlation reduced them by about 20%, and the centers of the bands were shifted upward by about 2 eV due to self-energy renormalization. The best values for the electron polaron valence bandwidths are 6.4, 4.2, 3.3, and 5.2 eV for the alternating trans, trans-cisoid, cis-transoid, and equidistant cis models, respectively. The vertical ionization potentials of the above four structures are 4.80, 5.47, 5.71, and 4.18 eV, respectively. The conduction bands have a width of 6–8 eV at the HF level (except equidistant cis with 4.6 eV for the larger basis sets) that will be reduced by about 15–20% due to polaron formation. The bands are shifted in this case uniformly downward by about 2–3 eV due to correlation. The best values obtained for the conduction bandwidths are 4.7, 6.4, 5.6, and 3.7 eV, respectively. These band shifts reduce the HF value of the fundamental gap by several eV's for all models. For the largest basis set, the ΔE_gap values change from 6.6, 6.9, 7.7, and 5.3 eV (HF results for the alternating trans, trans-cisoid, cis-transoid, and equidistant cis models, respectively) to 2.7, 3.2, 4.5, and 2 eV, respectively, at the correlated level.     

Theoretical study of the electronic spectra ofcis-1,3,5-hexatriene andcis-1,3-butadiene

Summary The electronic spectra forcis-1,3-butadiene andcis-1,3,5-hexatriene have been studied using multiconfiguration second-order perturbation theory (CASPT2) and extended ANO basis sets. The calculations comprise all singlet valence excited states below 8.0 eV, the first 3s, 3p, 3d Rydberg states, and the second 3s state. The four lowest triplet states were also studied. The resulting excitation energies forcis-hexatriene have been used in an assignment of the experimental spectrum, leading to a maximum deviation of 0.13 eV for the vertical transition energies. The calculations place the 1¹ B ₂ state 0.04 eV below the 2¹ A ₁ state. 16 excited states were studied incis-butadiene, using a CASPT2 optimized ground state geometry. The 1¹ B ₂ state was located at 5.58 eV, 0.46 eV below the 2¹ A ₁ state and 0.09 eV above the experimental value. No experimental assignments are available for the 15 other transitions. On leave from: Departmento de Quimica Física, Universidad de Valencia, Dr. Moliner 50, Burjassot, E-46100-Valencia, Spain     

Study of small chlorine‐doped potassium clusters by thermal ionization mass spectrometry

The theoretical calculations have predicted that nonmetal‐doped potassium clusters can be used in the synthesis of a new class of charge‐transfer salts which can be considered as potential building blocks for the assembly of novel nanostructured material. In this work, K_nCl (n = 2–6) and K_nCl_n?1 (n = 3 and 4) clusters were produced by vaporization of a solid potassium chloride salt in a thermal ionization mass spectrometry. The ionization energies (IEs) were measured, and found to be 3.64 ± 0.20 eV for K₂Cl, 3.67 ± 0.20 eV for K₃Cl, 3.62 ± 0.20 eV for K₄Cl, 3.57 ± 0.20 eV for K₅Cl, 3.69 ± 0.20 eV for K₆Cl, 3.71 ± 0.20 eV for K₃Cl₂ and 3.72 ± 0.20 eV for K₄Cl₃. The K_nCl⁺ (n = 3–6) clusters were detected for the first time in a cluster beam generated by the thermal ionization source of modified design. Also, this work is the first to report experimentally obtained values of IEs for K_nCl⁺ (n = 3–6) and K_nCl_n?1⁺ (n = 3 and 4) clusters. The ionization energies for K_nCl⁺ and K_nCl_n?1⁺ clusters are much lower than the 4.34 eV of the potassium atom; hence, these clusters should be classified as ‘superalkali’ species. Copyright © 2012 John Wiley & Sons, Ltd.     

Electronic reorganization triggered by electron transfer: The intervalence charge transfer of a Fe3+/Fe2+ bimetallic complex

The key role of the molecular orbitals in describing electron transfer processes is put in evidence for the intervalence charge transfer (IVCT) of a synthetic nonheme binuclear mixed‐valence Fe³⁺/Fe²⁺ compound. The electronic reorganization induced by the IVCT can be quantified by controlling the adaptation of the molecular orbitals to the charge transfer process. We evaluate the transition energy and its polarization effects on the molecular orbitals by means of ab initio calculations. The resulting energetic profile of the IVCT shows strong similarities to the Marcus' model, suggesting a response behaviour of the ensemble of electrons analogue to that of the solvent. We quantify the extent of the electronic reorganization induced by the IVCT process to be 11.74 eV, a very large effect that induces the crossing of states reducing the total energy of the transfer to 0.89 eV. © 2015 Wiley Periodicals, Inc.     

Microstructure and surface roughness of graphite‐like carbon films deposited on silicon substrate by molecular dynamic simulation

Molecular dynamics simulations are performed on the atomic origin of the growth process of graphite‐like carbon film on silicon substrate. The microstructure, mass density, and internal stress of as‐deposited films are investigated systematically. A strong energy dependence of microstructure and stress is revealed by varying the impact energy of the incident atoms (in the range 1–120 eV). As the impact energy is increased, the film internal stress converts from tensile stress to compressive stress, which is in agreement with the experimental results, and the bonding of C‐Si in the film is also increased for more substrate atoms are sputtered into the grown film. At the incident energy 40 eV, a densification of the deposited material is observed and the properties such as density, sp³ fraction, and compressive stress all reach their maximums. In addition, the effect of impact energy on the surface roughness is also studied. The surface morphology of the film exhibits different characteristics with different incident energy. When the energy is low (<40 eV), the surface roughness is reduced with the increasing of incident energy, and it reaches the minimum at 50 eV. Copyright © 2012 John Wiley & Sons, Ltd.     

Application of ESCA to polymer chemistry. XVI. Electron mean free paths as a function of kinetic energy in polymeric films determined by means of ESCA

Electron mean free paths as a function of kinetic energy have been measured by the substrate overlayer technique for in situ-polymerized films of poly(p-xylylene) and the monochloro- and monobromo-substituted derivatives. The results are compared with previous estimates of mean free paths available in the literature for organic materials. Comparison is also drawn with corresponding experimental data for typical metals and semiconductors, and it is shown that organic polymers fit into a consistent picture which may be rationalized on the basis of existing theory. For electrons of kinetic energy ～969 eV, ～1170 eV, 1202 eV, and 1403 eV, mean free paths of ～14 Å, ～22 Å, ～23 Å, and ～29 Å, respectively, are obtained for the poly(p-xylylene) polymer films studied in this work.     

Investigation of some 2,3-didehydro amino acids by fast ion bombardment,chemical ionization and mass-selected collision-induced dissociation mass spectrometry

Four 2,3-didehydro amino acids were investigated by fast ion bombardment (FIB) and ammonia chemical ionization (NH₃-CI) mass Spectrometry. The protonated molecules formed by the two techniques were mass selected and their respective collision-induced dissociations (CIDs) in the translational energy range 5–200 eV (in the laboratory frame of reference) were investigated. No obvious quantitative differences between the FIB and NH₃-CI mass spectra of the (E)- and (Z)-isomers were observed. Different internal excitation of the protonated molecules formed by the two techniques and the role of CID data in clarifying this particular observation are discussed.     

Discrimination among geometrical isomers of α-linolenic acid methyl ester using low energy electron ionization mass spectrometry

There is a consensus that electron impact ionization mass spectrometry is not capable of discriminating among geometrical isomers of unsaturated fatty acid methyl esters (and in general olefinic compounds). In this paper, we report the identification of all eight geometrical isomers of α-linolenic acid, one of the few essential ω-3 fatty acids that has attracted great attention, using low-energy electron ionization mass spectrometry. Three electron energies 70, 50, and 30 eV were studied and the mass spectrum of each isomer was obtained from the analysis of different concentrations of a standard mixture of α-linolenic acid methyl ester geometrical isomers to ensure the robustness of the method. Principal component analysis was employed to model the complex variation of m/z intensities across the isomers. Only using the data of 30 eV energy was complete differentiation among geometrical isomers observed. The unique cleavage pattern of the α-linolenic acid methyl ester isomers leading to a benzenium ion structure is discussed and general fragmentation rules are derived using the mass spectra of over 300 compounds with different kinds and levels of unsaturation. Application of the proposed method is not limited to α-linolenic acid. It can potentially be used to identify the geometrical isomers of any compounds with an olefinic chain.