Experimental study of dielectrophoresis and liquid dielectrophoresis mechanisms for particle capture in a droplet

This work presents a microfluidic system that can transport, concentrate, and capture particles in a controllable droplet. Dielectrophoresis (DEP), a phenomenon in which a force is exerted on a dielectric particle when it is subjected to a non-uniform electric field, is used to manipulate particles. Liquid dielectrophoresis (LDEP), a phenomenon in which a liquid moves toward regions of high electric field strength under a non-uniform electric field, is used to manipulate the fluid. In this study, a mechanism of droplet creation presented in a previous work that uses DEP and LDEP is improved. A driving electrode with a DEP gap is used to prevent beads from getting stuck at the interface between air and liquid, which is actuated with an AC signal of 200 V(pp) at a frequency of 100 kHz. DEP theory is used to calculate the DEP force in the liquid, and LDEP theory is used to analyze the influence of the DEP gap. The increment of the actuation voltage due to the electrode with a DEP gap is calculated. A set of microwell electrodes is used to capture a bead using DEP force, which is actuated with an AC signal of 20 V(pp) at a frequency of 5 MHz. A simulation is carried out to investigate the dimensions of the DEP gap and microwell electrodes. Experiments are performed to demonstrate the creation of a 100-nL droplet and the capture of individual 10-μm polystyrene latex beads in the droplet.     

N‐Linked Glycans of Chloroviruses Sharing a Core Architecture without Precedent

N‐glycosylation is a fundamental modification of proteins and exists in the three domains of life and in some viruses, including the chloroviruses, for which a new type of core N‐glycan is herein described. This N‐glycan core structure, common to all chloroviruses, is a pentasaccharide with a β‐glucose linked to an asparagine residue which is not located in the typical sequon N‐X‐T/S. The glucose is linked to a terminal xylose unit and a hyperbranched fucose, which is in turn substituted with a terminal galactose and a second xylose residue. The third position of the fucose unit is always linked to a rhamnose, which is a semiconserved element because its absolute configuration is virus‐dependent. Additional decorations occur on this core N‐glycan and represent a molecular signature for each chlorovirus.     

Popularising Chemistry in Secondary Schools——through the development of Scientific and Technological Literacy for All

While chemistry is popular for children of primary school age,its popularity drops dramatically in secondary schools,A potential solution to address this is to recognise the need for greater relevance-relevance to the curriculum,to the needs of society and,in the eyes of the students.The paper tries to puts forward a rethink of the philosophy for school chemistry education,based on the underlying belief that chemistry education is an integral part of education.The target is labelled scientific and technological literacy for all (STL),STL rejects the notion that chemistry is taught solely to acquire tha abilities to be a scientist and supports the vision of a single curriculum goal,applicable to all students.Besides being a philosophy,STL is also a teaching approach.This approach is to initiate the teaching of chemistry topics,starting from a carefully chosen society perspective and to introduce the conceptual learning on a need-to-know basis.A limitatioin is the professional development of teachers,Suggestion for overcoming this involve workshop on materials development.Aconcern is expressed in cases where teachers make use of ready-made teaching materials(a common practice),without first gaining an understanding and an appreciation of the intended philosophy related to these materials.     

Facile Electrochemical Hydrogenation and Chlorination of Glassy Carbon to Produce Highly Reactive and Uniform Surfaces for Stable Anchoring of Thiolated Molecules

Carbon is a highly adaptable family of materials and is one of the most chemically stable materials known, providing a remarkable platform for the development of tunable molecular interfaces. Herein, we report a two‐step process for the electrochemical hydrogenation of glassy carbon followed by either chemical or electrochemical chlorination to provide a highly reactive surface for further functionalization. The carbon surface at each stage of the process is characterized by AFM, SEM, Raman, attenuated total reflectance (ATR) FTIR, X‐ray photoelectron spectroscopy (XPS), and electroanalytical techniques. Electrochemical chlorination of hydrogen‐terminated surfaces is achieved in just 5 min at room temperature with hydrochloric acid, and chemical chlorination is performed with phosphorus pentachloride at 50 °C over a three‐hour period. A more controlled and uniform surface is obtained using the electrochemical approach, as chemical chlorination is observed to damage the glassy carbon surface. A ferrocene‐labeled alkylthiol is used as a model system to demonstrate the genericity and potential application of the highly reactive chlorinated surface formed, and the methodology is optimized. This process is then applied to thiolated DNA, and the functionality of the immobilized DNA probe is demonstrated. XPS reveals the covalent bond formed to be a C?S bond. The thermal stability of the thiolated molecules anchored on the glassy carbon is evaluated, and is found to be far superior to that on gold surfaces. This is the first report on the electrochemical hydrogenation and electrochemical chlorination of a glassy carbon surface, and this facile process can be applied to the highly stable functionalization of carbon surfaces with a plethora of diverse molecules, finding widespread applications.     

Dominant representations and a markaracter table for a group of finite order

Summary The concept of markaracter is proposed to discuss marks and characters for a group of finite order on a common basis. Thus, we consider a non-redundant set of dominant subgroups and a non-redundant set of dominant representations (SDR), where coset representations concerning cyclic subgroups are named dominant representations (DRs). The numbers of fixed points corresponding to each DR are collected to form a row vecter called a dominant markaracter (mark-character). Such dominant markaracters for the SDR are collected as a markaracter table. The markaracter table is related to a subdominant markaracter table of its subgroup so that the corresponding row of the former table is constructed from the latter. The data of the markaracter table are in turn used to construct a character table of the group, after each character is regarded as a markaracter and transformed into a multiplicity vector. The concept of orbit index is proposed to classify multiplicity vectors; thus, the orbit index of each DR is proved to be equal to one, while that corresonding to an irreducible representation is equal to zero.     

Multiple automatic base selection: Protein–ligand docking based on incremental construction without manual intervention

A possible way of tackling the molecular docking problem arising in computer- aided drug design is the use of the incremental construction method. This method consists of three steps: the selection of a part of a molecule, a so- called base fragment, the placement of the base fragment into the active site of a protein, and the subsequent reconstruction of the complete drug molecule. Assuming that a part of a drug molecule is known, which is specific enough to be a good base fragment, the method is proven to be successful for a large set of docking examples. In addition, it leads to the fastest algorithms for flexible docking published so far. In most real-world applications of docking, large sets of ligands have to be tested for affinity to a given protein. Thus, manual selection of a base fragment is not practical. On the other hand, the selection of a base fragment is critical in that only few selections lead to a low-energy structure. We overcome this limitation by selecting a representative set of base fragments instead of a single one. In this paper, we present a set of rules and algorithms to automate this selection. In addition, we extend the incremental construction method to deal with multiple fragmentations of the drug molecule. Our results show that with multiple automated base selection, the quality of the docking predictions is almost as good as with one manually preselected base fragment. In addition, the set of solutions is more diverse and alternative binding modes with low scores are found. Although the run time of the overall algorithm increases, the method remains fast enough to search through large ligand data sets.     

Method for computing protein binding affinity

A Monte Carlo method is given to compute the binding affinity of a ligand to a protein. The method involves extending configuration space by a discrete variable indicating whether the ligand is bound to the protein and a special Monte Carlo move, which allows transitions between the unbound and bound states. Provided that an accurate protein structure is given, that the protein-ligand binding site is known, and that an accurate chemical force field together with a continuum solvation model is used, this method provides a quantitative estimate of the free energy of binding.     

HomologyPlot: Searching for homology to a family of proteins using a database of unique conserved patterns

Summary A new database of conserved amino acid residues is derived from the multiple sequence alignment of over 84 families of protein sequences that have been reported in the literature. This database contains sequences of conserved hydrophobic core patterns which are probably important for structure and function, since they are conserved for most sequences in that family. This database differs from other single-motif or signature databases reported previously, since it contains multiple patterns for each family. The new database is used to align a new sequence with the conserved regions of a family. This is analogous to reports in the literature where multiple sequence alignments are used to improve a sequence alignment. A program called Homology-Plot (suitable for IBM or compatible computers) uses this database to find homology of a new sequence to a family of protein sequences. There are several advantages to using multiple patterns. First, the program correctly identifies a new sequence as a member of a known family. Second, the search of the entire database is rapid and requires less than one minute. This is similar to performing a multiple sequence alignment of a new sequence to all of the known protein family sequences. Third, the alignment of a new sequence to family members is reliable and can reproduce the alignment of conserved regions already described in the literature. The speed and efficiency of this method is enhanced, since there is no need to score for insertions or deletions as is done in the more commonly used sequence alignment methods. In this method only the patterns are aligned. HomologyPlot also provides general information on each family, as well as a listing of patterns in a family.     

A Water-Soluble Polymer-Lumefantrine Conjugate for the Intravenous Treatment of Severe Malaria

Uncomplicated malaria is effectively treated with oral artemisinin-based combination therapy (ACT). Yet, there is an unmet clinical need for the intravenous treatment of the more fatal severe malaria. There is no combination intravenous therapy for uncomplicated due to the nonavailability of a water-soluble partner drug for the artemisinin, artesunate. The currently available treatment is a two-part regimen split into an intravenous artesunate followed by the conventional oral ACT . In a novel application of polymer therapeutics, the aqueous insoluble antimalarial lumefantrine is conjugated to a carrier polymer to create a new water-soluble chemical entity suitable for intravenous administration in a clinically relevant formulation . The conjugate is characterized by spectroscopic and analytical techniques, and the aqueous solubility of lumefantrine is determined to have increased by three orders of magnitude. Pharmacokinetic studies in mice indicate that there is a significant plasma release of lumefantrine and production its metabolite desbutyl-lumefantrine (area under the curve of metabolite is ≈10% that of the parent). In a Plasmodium falciparum malaria mouse model, parasitemia clearance is 50% higher than that of reference unconjugated lumefantrine. The polymer-lumefantrine shows potential for entering the clinic to meet the need for a one-course combination treatment for severe malaria.     

A sensitive and rapid assay for 4-aminophenol in paracetamol drug and tablet formulation, by flow injection analysis with spectrophotometric detection

4-Aminophenol (4AP) is the primary degradation product of paracetamol which is limited at a low level (50 ppm or 0.005% w/w) in the drug substance by the European, United States, British and German Pharmacopoeias, employing a manual colourimetric limit test. The 4AP limit is widened to 1000 ppm or 0.1% w/w for the tablet product monographs, which quote the use of a less sensitive automated HPLC method. The lower drug substance specification limit is applied to our products, (50 ppm, equivalent to 25 μg 4AP in a tablet containing 500-mg paracetamol) and the pharmacopoeial HPLC assay was not suitable at this low level due to matrix interference. For routine analysis a rapid, automated assay was required. This paper presents a highly sensitive, precise and automated method employing the technique of Flow Injection (FI) analysis to quantitatively assay low levels of this degradant. A solution of the drug substance, or an extract of the tablets, containing 4AP and paracetamol is injected into a solvent carrier stream and merged on-line with alkaline sodium nitroprusside reagent, to form a specific blue derivative which is detected spectrophotometrically at 710 nm. Standard HPLC equipment is used throughout. The procedure is fully quantitative and has been optimised for sensitivity and robustness using a multivariate experimental design (multi-level ‘Central Composite’ response surface) model. The method has been fully validated and is linear down to 0.01 μg ml⁻¹. The approach should be applicable to a range of paracetamol products.     

Design and parameterization of a stochastic cellular automaton describing a chemical reaction

Although most of the work concerned with reaction kinetics concentrates on empirical findings, stochastic models, and differential equations, a growing number of researchers is exploring other methods to elucidate reaction kinetics. In this work, the parameterization of an utter discrete spatio-temporal model, more specifically, a cellular automaton (CA), describing the reaction of HCl with CaCO(3) , is suggested. Furthermore, a system of partial differential equations (PDE), deduced from a set of CA rules, is implemented to compare both modeling paradigms. In this article, the experimental setup to acquire time series of data is explained, a stochastic CA-based model and a continuous PDE-based model capable of describing the reaction are proposed, the models are parameterized using the experimental data and, finally, the relationship between a discrete time step of the CA-based model and the physical time is studied. Essentially, the parameterization of both models can be traced back to the quest for a solution of the inverse problem in which a (set of) rule(s), respectively a system of PDE, is deduced starting from the observed data. It is demonstrated that the proposed CA- and PDE-based models are capable of describing the considered chemical reaction with a high accuracy, which is confirmed by a root mean squared error between the simulated and observed data of 0.388 and 0.869 g CO(2) , respectively. Further, it is shown that an exponential or linear relationship can be used to link the physical time to a discrete time step of the CA-based model.     

Determination of sulfite in beer samples using an amperometric fill and flow channel biosensor employing sulfite oxidase

A simple method is described to determine sulfite in beer samples using a fill and flow channel biosensor. A droplet of sample is placed into the inlet of a rectangular flow cell and begins to flow through the channel by capillarity. The flow is maintained and controlled by a porous outlet plug of defined porosity. In a rectangular flow cell, the sample solution flows through three consecutive zones: over a predictor electrode, an enzyme layer and a detector electrode. Together these three zones enable the differentiation between current due to sulfite and current due to other electroactive species in the sample. The predictor electrode is located upstream, and on the opposite channel wall to the enzyme layer and detector electrode, and is poised at the same potential (+0.65 V versus Ag/AgCl) as the detector electrode. On this electrode, the current contribution from all species in the sample solution that are oxidized at that potential is determined. The enzyme layer contains sulfite oxidase, which, in the process of oxidizing sulfite, produces hydrogen peroxide, which itself is reduced by excess sulfite. The current at the downstream detector electrode is therefore different from that at the predictor electrode as a result of the enzyme reaction and the difference of the currents, corrected for the dimensions of the electrodes, is proportional to the concentration of sulfite. The method enables a straightforward correction of the interfering current at the detector electrode and a determination of the analyte concentration. The effect of interferences from ascorbic acid, ethanol, sorbic acid and tartaric acid in the detection of sulfite is efficiently removed. The concentration of sulfite in a sample of beer measured by the biosensor is equivalent to that measured using a reference method based on the AOAC-recommended Monier-Williams method.     

Influence of the convective term in the Nernst-Planck equation on properties of ion transport through a layer of solution or membrane

The one-dimensional boundary-value problem of steady-state ion transport, which takes into account the convective component, is formulated and solved in terms of the Nernst-Planck model. This problem is investigated in connection with the diffusion layer, which is understood in a broad sense. This can be the diffusion layer as it is usually understood, i.e., located adjacent to a hydraulically permeable membrane. In another context it can be regarded as a capillary connecting two reservoirs filled with solutions of different concentration or as an uncharged macropore permeating the membrane and separating two solutions. Finally, the solution to the problem is applied to the membrane itself, which is represented as a quasi-homogeneous gel. In the latter case, a virtual electroneutral solution in local equilibrium with a small volume of membrane is considered. The problem is investigated in dimensionless form as a function of the Peclet number. It is shown that the Peclet number is numerically equal to the absolute value of the dimensionless convection velocity. The limiting current, concentration profiles, distributions of the field strength and potential, and effective transport numbers are analyzed as functions of the convective component.     

Oxygen electroreduction on a granulated layer of a copper-containing electron-ion exchanger

The reduction of dissolved oxygen from a flowing aqueous solution of sodium sulfite on a cathodically polarized granulated layer of a copper-containing electron-ion exchanger is studied. It is established that the polarizing current is distributed over the layer height nonuniformly. A peak current corresponding to the oxygen electroreduction is discovered. The peak shifts from the inlet into the granulated layer to the exit out of it, which is connected with the advance of the concentration front and with an increase in ohmic resistance due to partial oxidation of copper centers. The distribution of the polarizing current is analogous to the distribution of the limiting current of the oxygen reduction, which is determined from polarization curves. The reaching of a stationary position of the peak of the polarizing current and the oxygen reduction degree with time testifies to the onset of a stationary state, at which the current turns limiting and the balance between the arrival and electroreduction of oxygen is fulfilled.     

Towards single-microorganism detection using surface-enhanced Raman spectroscopy

The identification and discrimination of microorganisms is important not only for clinical reasons but also for pharmaceutical clean room production and food-processing technology. Vibrational spectroscopy such as IR, Raman, and surface-enhanced Raman scattering (SERS) can provide a rapid ‘fingerprint’ on the chemical structure of molecules and is used to obtain a ‘fingerprint’ from microorganisms as well. Because of the requirement that a single bacterium cell and noble metal nanoparticles must be in close contact and the lack of a significant physical support to hold nanoparticles around the single bacterium cell, the acquisition of SERS spectra for a single bacterium using colloidal nanoparticles could be a challenging task. The feasibility of SERS for identification down to a single bacterium is investigated. A Gram-negative bacterium, Escherichia coli, is chosen as a model for the investigation. Because the adsorption of silver nanoparticles onto the bacterial cell is an exclusive way for locating nanoparticles close to the bacterium cell, the absorption characteristics of silver nanoparticles with different surface charges are investigated. It is demonstrated that the citrate-reduced colloidal silver solution generates more reproducible SERS spectra. It is found that E. coli cells aggregate upon mixing with silver colloidal solution, and this may provide an additional benefit in locating the bacterial cell under a light microscope. It is also found that a laser wavelength in the UV region could be a better choice for the study due to the shallow penetration depth. It is finally shown that it is possible to obtain SERS spectra from a single cell down to a few bacterial cells, depending on the aggregation properties of bacterial cells for identification and discrimination.     

Maintenance of a calibration model for near infrared spectrometry by a combined principal component analysis-partial least squares approach

A novel strategy for building and maintaining calibration models has been developed for use when the future boundaries of the sample set are unknown or likely to change. Such a strategy could have an impact on the economics and time required to obtain and maintain a calibration model for routine analysis. The strategy is based on both principal component analysis (PCA) and partial least squares (PLS) multivariate techniques. The principal action of the strategy is to define how “similar” a new sample is to the samples currently defining the calibration dataset. This step is performed by residuals analysis, following PCA. If the new sample is considered to have a spectrum “similar” to previously available spectra, then the model is assumed able to predict the analyte concentration. Conversely, if the new sample is considered “dissimilar”, then there is new information in this sample, which is unknown to the calibration model and the new sample is added automatically to the calibration set in order to improve the model. The strategy has been applied to a real industrial dataset provided by BP Amoco Chemicals. The data consists of spectra of 102 sequential samples of a raw material. The strategy produced an accurate calibration model for both target components starting with only the first four samples, and required a further 17 reference measurements to maintain the model for the whole sampling sequence, which was over a 1-year period.     

电石渣催化煤燃烧特性的影响因素分析

用热重法研究了不同条件下电石渣的催化煤燃烧特性，发现电石渣对晋城煤的着火温度和固定碳燃尽率都具有一定的促进作用，而且随添加量的增加助燃作用增强。采用干法混合方式添加0.5%电石渣的助燃作用很小，而采用浆状混合方式则具有较为明显的助燃效果。添加0.5%电石渣能使晋城无烟煤的着火温度由582 ℃降低到576 ℃，使潞安贫煤的固定碳燃尽率由89.41%提高到94.84%，而对长广高灰烟煤的着火和燃尽特性都影响很小。     

A Bayesian sparse reconstruction method for fault detection and isolation

This article develops a Bayesian method for fault detection and isolation using a sparse reconstruction framework. The normal/training data is assumed to follow a signal‐plus‐noise model, and an indicator matrix is used to show whether the test data is from a faulty process. The distribution of the indicator matrix is modeled by a Laplacian distribution, which forces the indicator matrix to be a sparse one, and a Gibbs sampler is derived to obtain the estimation/reconstruction of the indicator matrix, the unobserved signals, and other parameters like signal mean, covariance, and noise variance. The faulty variables can then be detected and isolated by inspecting whether corresponding rows of the indicator matrix are zero. The proposed Bayesian approach is data driven; it allows for simultaneous fault detection and isolation. A simulation study and an industrial case study are used to test the performance of the proposed method. Copyright © 2015 John Wiley & Sons, Ltd.     

Deformation and adhesive contact of elastomeric membranes

We have developed a highly sensitive inflation technique for probing adhesive interactions between soft materials. In this method, an elastomeric membrane is placed across a cylindrical glass tube and is pressurized into contact with a substrate. The adhesive interaction between the membrane and the substrate is obtained from the angle of contact, which is determined indirectly from the measured contact radius and applied pressure. An analysis of the membrane profile based on the numerical solution of the axisymmetric Laplace equation is developed. In a nonadhesive situation, where the membrane contact angle is known to be zero, the analysis is used to obtain the relationship between the membrane deformation and the biaxial membrane strain. Linearization of the governing equations is used to develop an analytic solution for the contact angle and energy release rate, making a connection to existing, more restrictive analyses of this problem. Results from three different types of membranes are presented as illustrative applications of the method. The substrate in these experiments is the gold electrode surface of a quartz crystal resonator, and the effect of membrane contact on the crystal resonance is summarized briefly. Adhesive interactions between the membranes are minimized in most cases by adding a grafted polyethylene glycol brush to one or both of the contacting surfaces. © 2007 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 45: 3361–3374, 2007