Trans-cis isomerization of an azoxybenzene liquid crystal

Trans-cis isomerization was investigated in a room temperature liquid crystal mixture of two azoxybenzene compounds. Experiments were performed on isolated molecules in dilute solutions and on the liquid crystal phase composed of the pure compounds. The absorption spectra of the trans and cis isomers were found to be similar to those of azobenzene compounds, as were the birefringence and order parameter of the nematic liquid crystal phase. The photo-optic properties were also similar in that irradiation by ultraviolet light caused the conversion from trans to cis isomers, while short wavelength visible light incident on these compounds resulted in the conversion from cis to trans isomers. The activation energy for thermal relaxation from the cis to trans isomer in the liquid crystal phase was determined to be (66±7) kJ/mole, which is less than for azobenzene in solution. While a photostationary state in a dilute solution with approximately equal numbers of trans and cis isomers was achieved, the nematic-isotropic transition of the mixture of the pure compounds decreased from 70°C to room temperature with a cis concentration of only about 12%. One unusual finding was that the photostationary concentration of trans and cis isomers due to irradiation with light of a specific visible wavelength depended on the starting concentrations of the two isomers, indicating that there may be a molecular conformation that is not photo-responsive and relaxes only thermally.     

The manifestation of non-bonded attraction in the physical properties of cis and trans olefins

Non-bonded attraction is suggested to account for a host of differences in the physical properties of cis and trans olefins of the type XHC=CHX. The main predictions are: (i) The cis isomer is more stable than the trans isomer; (ii) The C=C bond is longer and the C-X bonds are shorter for the cis isomer; (iii) The π MO's orbital energies of the two isomers differ such that the trans isomer is a better electron donor and electron acceptor than the cis isomer. Ab initio calculations at the STO-3G and the 4-31G levels in support of the model are presented. The photoelectron spectra of cis and trans difluoro, dichloro and dibromoethylene are discussed, and found to be in accord with our qualitative model.     

X-ray diffraction studies on cis- and trans-4'-cyanobiphenyl-4-yl 3-n-propylcyclobutane-1-carboxylate

X-ray diffraction has been used to study the nematic phases of the cis and trans isomers of an elongated molecule containing the cyclobutane group. It has been shown that these nematic phases consist of a mixture of single molecules and overlapping core dimers. It has been found that increasing the temperature of the cis isomer rapidly reduces the dimer population, whereas increasing the temperature of the trans isomer enhances the dimer population. This provides an explanation of the relatively high clearing temperature of the trans isomer. The different temperature dependences of the dimer population in the cis and trans isomers has been explained by a model involving inversion of the cylobutane group.     

Reactivity of ruthenium complexes with uninegative (X,S)-donor ligands (X = S,P)—II. Phosphine substitution in [Ru(S,S)2(PR3)2] derivatives. Crystal structure of trans-bis(O-ethyldithiocarbonate)bis(dimethylphenylphosphine)-ruthenium(II)

The complexes [Ru(S,S)₂(PPh₃)₂] [S,S = EtCOCS₂⁻, (CH₂)₄NCS₂⁻] react with a variety of tertiary phosphines with the substitution of triphenylphosphine and the formation of [Ru(S,S)₂(PR₃)₂]. The reaction occurs with the formation ofthe cis isomer, except for the complex with PMe₂Ph that gives rise to the trans isomer as the crystal structure shows. The effect of the different phosphines on the ruthenium complex is analysed in terms of the spectroscopic and electrochemical properties of the isolated compounds. The cyclic voltammetric studies of the cis complexes show that isomerization to the trans isomer occurs on oxidation. This isomerization is not observed in the trans-[Ru(S,S)₂(PMe₂Ph)₂] complexes that give rise to stable trans-ruthenium(II)/ruthenium(III) couples. In a similar way the diphosphine complexes afford a quasi-reversible cis-ruthenium(II)/ruthenium(III) process.     

Synthesis and structure of novel heterocyclic aminotelluranes

A series of novel 6-alkoxy-12H, 14H-[1,2,3]benzoxatellurazino[2,3-b]-[1,2,3]benzoxatellurazines 3 was synthesized from tetraalkoxytelluranes and bis(2-hydroxybenzyl)amines. ¹H, ¹³C and ¹²⁵Te NMR studies suggest that these aminotelluranes, unlike their orthoamidoester analogs, have a rigid trans-fused conformation. A preferential trans-fused conformation was also deduced from ab initio MO calculations of a model oxatellurazinooxatellurazine 7, using the STO-3G and SBK basis sets, and the Gaussian-92 program, which imply that the trans-fused aminotellurane is more stable than the corresponding cis isomer by 10.3 kcal/mol.     

Proton magnetic resonance studies of cyclic compounds—III cis- and trans-2,6-dimethylmorpholines

Commercial 2,6-dimethylmorpholine has been separated into cis- and trans-isomers by vapour phase chromatography. The PMR spectra of the bases, analysed as ABXK₃ systems (J_AK = J_BK = 0), show that the most abundant isomer has the cis-configuration, consisting probably of a single conformation in which both methyl groups are equatorial. The trans-isomer is probably a mixture of rapidly inverting and energetically equivalent conformations, since the vicinal coupling constants deduced from the PMR spectrum are averages of those expected for the two conformations.     

The stereochemistry of Ei reaction of N-p-toluenesulphonyl sulphilimines

The stereochemistry of the pyrolysis of S-alkyl-N-p-tosylsulphilimines was investigated with both the erythro and threo isomers of S-phenyl-S-1-phenyl-2, 2-phenylmethoxy-1-ethyl-N-benzene-sulphonylsulphilimine I_E and I_T. Pyrolyses revealed that I_E gives only trans-1-methoxystilbene V_T in nearly quantitative yield while a mixture of 5·5% trans-V_T and 94·5% cis-V_C are formed from I_T. The kinetics of the reactions of both I_E and I_T obey a good 1st order rate equation. Pyrolysis is considered to proceed via a concerted cis elimination involving a five membered cyclic transition state.     

Stereochemical studies of optically active 2-hydroxy-5-alkyl-δ-valerolactone derivatives as chiral dopant for ferroelectric liquid crystals

Both (2S, 5R)- and (2R, 5R)-2-hydroxy-5-alkyl-δ-valerolactone derivatives, cis and trans, respectively, show almost the same magnitude of spontaneous polarization (P_s) when added to a non-chiral smectic C mixture. The stereochemistry of these chiral dopants was studied using ¹H NMR. Trans derivatives seem to have a half-chair conformation with the 2, 5-diequatorial substituents and the cis derivatives have rather a flat conformation in solution. However in the liquid-crystalline phase, the cis and trans derivatives appear to change their conformation or the distribution of their conformations as the alkyl chain length is varied. The difference in the effect as a chiral dopant depends upon lateral interactions between chiral molecules through the solvent liquid crystal phase.     

Conformational and NBO analysis on cis and trans isomers of methyl-1-(4-hydroxy-3-methoxyphenyl)-1,2,3,4-tetrahydro-9H-β-carboline-3-carboxylate

The cis and trans-methyl-1-(4-hydroxy-3-methoxyphenyl)-1,2,3,4-tetrahydro-9H-β-carboline-3-carboxylates were prepared and ¹H and ¹³C NMR spectra were recorded for both isomers. Conformational and NBO analysis were carried out for the cis and trans isomers. Conformer structures were pre-optimized using the hybrid method B3LYP along with the 6-311+G(d) basis set. Frequency calculations were employed to confirm the structures as minimum points. Potential energy surfaces (PES) were built at the same level of theory. Geometries obtained from DFT calculations were used to perform NBO analysis by the NBO 3.1 module in GAUSSIAN 03. The results obtained through theoretical calculations revealed that the shielding observed at C1 for the trans isomer can be attributed to carbomethoxy γ-effect, together with the hyperconjugative effect, while only hyperconjugative effects were found to explain the shielding of C3. The higher chemical shift value of C3 of the cis isomer was attributed to the carbonyl substituent, which plays an important role by capturing part of the electronic density in C3.     

Photodynamics of azobenzene in a hindering environment

We have run trajectory surface hopping simulations of the trans → cis photoisomerization of azobenzene, subject to a pulling force. The model mimics two situations: a trans-azobenzene derivative with bulky substituents that may not be easily displaced, and a recent experiment by Gaub’s group [T. Hugel, N.B. Holland, A. Cattani, L. Moroder, M. Seitz, H.E. Gaub, Science 296 (2002) 1103; N.B. Holland, T. Hugel, G. Neuert, A. Cattani-Scholz, C. Renner, D. Oesterhelt, L. Moroder, M. Seitz, H.E. Gaub, Macromolecules 36 (2003) 2015; G. Neuert, T. Hugel, R.R. Netz, H.E. Gaub, Macromolecules 39 (2005) 789], in which a polymer with azobenzene units was stretched in an atomic force microscope. In both cases, the shortening of the azobenzene moiety in going from the trans to the cis form is opposed by a pulling force. Our simulations show that the trans → cis photoconversion is only partially suppressed by considerably large forces (≈500 pN or more). However, the cis isomer reverts to trans in the ground state, with the help of the pulling force and using the vibrational energy that is available in the first 1–2 ps. The lowering of the quantum yields is therefore the combined result of hindering of the excited state process and of the hot ground state back reaction.     

Deuterium NMR studies of inositol liquid crystals [1]

Deuterium NMR investigations are presented on members of two new mesogenic series derived from the naturally occurring stereoisomers myo- and scW/o-inositol. Tetraethers of these two series exhibit thermotropic columnar phases in which the columns are apparently formed by stacked hydrogen bonded dimers of these molecules which chemically are vicinal diols. Deuterium NMR measurements were performed on the tetraoctyl homologues 2e (a cis diol) and 3e (a trans diol) of these series. We have investigated mixtures of these diols with small amounts of benzene-d₆ as probe molecules as well as samples of the neat diol compounds deuteriated at their hydroxyl groups. The results obtained show that the mesophases of both compounds are uniaxial and align partially in a magnetic field upon slow cooling from their isotropic liquids. The alignment is with the director parallel to the field direction indicating that the anisotropic magnetic susceptibility of this mesophase is positive. The deuterium quadrupole splitting of the benzene-d₆ probe in both systems is temperature dependent and in the trans diol 3e it even changes sign. This is interpreted in terms of a model in which the benzene-d₆ probe equilibrates rapidly between two (or more) solvation sites with quadrupole splittings of opposite signs The deuterium spectra of the neat deuterium labelled cis diol 2e exhibit two different signals due to the two deuterons which are located at the axial and equatorial hydroxyl groups. This indicates that there is no fast intra- or intermolecular exchange of the hydroxyl hydrogens. The overall quadrupole splittings of the hydroxyl deuterons in this compound are highly reduced compared to their static values and this is interpreted in terms of motional modes involving both reorientation of the hydroxyl deuterons about their C-O axis and overall reorientation of the molecules (or pairs of molecules) around the columnar axes. The corresponding spectra of the neat deuteriated trans diol 3e exhibit a single spectrum indicating that both hydroxyl deuterons in this compound are equivalent, or very nearly so. Within the mesophase region the spectrum undergoes gradual changes due to the increase in the molecular mobility, but the overall motional narrowing is less than in the cis isomer 2e. Apparently due to stronger hydrogen bonding in the trans isomer 3e the precession of the hydroxyl groups is hindered and a fast molecular reorientation is only possible at high temperatures.     

Utilization of Azobenzene Units to Control Zinc-mediated Ring Opening Polymerization of Cyclic Esters

Salicylaldimine Zn(Ⅱ) complexes bearing azobenzene moieties were prepared to catalyze ring opening polymerization of various cyclic esters. The different reactivities of the trans and cis isomers of the zinc complexes provide a facile strategy to control polymerization processes as well as the compositions of the resultant polymers.     

Cyclopropyl carbanions derived from esters of 2-phenylcyclopropylcarboxylic acids: Configurational stability and reaction with electrophiles

The base-catalyzed cis-trans isomerization of cis and trans-alkyl 2-phenylcyclopropylcarboxylates was studied in several aprotic solvents. It was found that contact ion-pain of the derived carbanion lithium salts were configurationally more stable than the solvent-separated ones. Reaction of either the cis or the trans esters with MeI, and the reaction of the cis ester with Ph₂C = O, resulted in the corresponding I-substituted derivatives having cis geometry only. This was explained as due to steric hindrance to elctrophilic attack exerted by the 2-phenyl group in the case of the trans substrate. The trans esters did not react with Ph₂C=O. Inhibition of the trans-to-cis isomerization of the carbanion salt of the trans substrate in presence of Ph₂C=O could lead to this result.     

Novel starshaped initiators for the controlled radical polymerization based on resorcin[4]- and pyrogallol[4]arenes

Multifunctional macrocyclic initiators for the atom transfer radical polymerization (ATRP) based on different resorcin[4]- and pyrogallol[4]arenes have been synthesized. The initiators with 8, 12 and 16 tertiary -bromoesters on the core were received by complete esterification of all phenolic groups with 2-bromo-isobutyryl bromide. The calixarene derivatives with aliphatic chains on the bridging methine carbon were obtained as their rccc (all cis) isomers, while the corresponding calixarenes with aromatic substituents gave mixtures of their rccc and rctt (cis, cis, trans, trans) isomers.     

Construction and investigation of photo-switch property of azobenzene-bridged pillar[5]arene-based [3]rotaxanes

Series of azobenzene-bridged pillar[5]arene-based [3]rotaxanes with different alkyl chain length of guest molecules were constructed by threading-endcapping method with alkylenetriazole as axile and tetrahydrochromene as endcapping group.The encapsulation of pillar[5]arenes were proved by highresolution mass,¹ H NMR and NOESY spectra.The photo-responsive property were examined by irradiation of the synthesized [3]rotaxanes with 365 nm and blue light LED,which caused trans to cis and cis to trans isomerization,respectively.Irradiation of corresponding model guest compounds without pillar[5]arene encapsulation resulted in near completely trans to cis and cis to trans isomerization,indicating the existence of pillar[5]arenes is the determining factor for the comprised photo isomerization efficiency.     

Molecular determinants for drug-receptors : Part 11. The preferred conformation of N-(p-anisoyl)pyrrolidin-2-one (“Aniracetam”) in the solid and solution states as indicated by X-ray crystal structure analysis, dipole moment and theoretical calculations

N-(p-anisoyl)pyrrolidin-2-one in the crystalline state exhibites a cis—rans conrotatory conformation with N---CO and CO---C_ar rotational angles of 33.5° and 38.5° respectively, and the p-methoxy group situated cis to the central carbonyl bond, as shown by X-ray structure analysis. As suggested by dipole moment analysis and MMP2 molecular mechanics calculations, in solution similar conrotatory models hold for both c- and t-subconformers having the p-methoxy group cis or trans to the central carbonyl bond. INDO calculations were also carried out, indicating that both subconformers are equally stable.     

Molecular modeling of the olefin metathesis by tungsten(0) carbene complexes

Density functional and second-order Moller–Plesset theory were used to model W(0) carbene mediated homogeneous metathesis reaction of propylene. The calculations show that the rate determining step of the metathesis is the initiation. After the initiation has been completed the rate determining step becomes dissociation of olefin–metallocarbene complex. The low stereoselectivity of the olefin metathesis reaction is due to the close matching of activation energies for cis and trans isomer formation and the fast cis–trans isomerization caused by the catalysts. The non-productive olefin metathesis reaction always dominates the reaction mixture owing to its very low activation energy. The electronic structure of metal carbene olefin complexes can be described as a combination of donor–acceptor interactions between HOMO of the olefin and LUMO of metal carbene located at carbene carbon on the one hand, and the Dewar, Chatt and Duncanson back donation scheme on the other.     

Conformational analysis of gossypol and its derivatives by molecular mechanics

Conformations and inversion pathways leading to racemization of all the tautomers of gossypol, gossypolone, anhydrogossypol, and a diethylamine Schiff's base of gossypol were investigated with MM3(2000). All forms have hindered rotation because of clashes between the methyl carbon atom and oxygen-containing moieties ortho to the bond linking the two naphthalene rings. Inversion energies generally agree with available experimental data. Gossypol preferentially inverts in its dihemiacetal tautomeric form through the cis pathway (where similar groups clash). Gossypolone inverts more easily than gossypol, and preferentially through the trans pathway (where dissimilar groups clash) when one of its outer rings has an enol-keto group and the other has an aldehyde group. Anhydrogossypol racemizes through the cis pathway. The bridge bond and the ortho exo-cyclic bonds in all the structures bend from planarity, and the inner naphthalene rings pucker to accommodate the inversion. For gossypol, the transition is achieved through greater bending of the exo-cyclic bonds (up to 12°) and less distortion of the inner benzyl rings (q≤0.34 Å), (up to 12.7°) . For gossypolone the transition occurs with greater distortion of the inner benzyl rings (q≤0.63 Å) and less out-of-plane bending (up to 8.4°). By isolating individual clashes, their contribution to the overall barrier can be analyzed, as shown for the dialdehyde tautomer of gossypol.     

Synthesis of dihydrodehydrodiconiferyl alcohol and derivatives through intramolecular C–H insertion

The natural dihydrobenzofuran neolignan 1 and its derivative 3 have been prepared through intramolecular C–H insertion catalyzed by a Rh(II) chiral complex. Moderate diastereo and enantioselectivities were observed. The cis and trans diastereomers were separated and unambiguously identified. The absolute configurations of the major isomers were established through chiral HPLC analysis and study of the Cotton effects in their circular dichroism curves.     

Molecular orientation of azobenzene chromophores in ultrathin polymer nanosheets studied by attenuated total reflection spectroscopy

This paper describes characterization of molecular orientation for azobenzene moieties in a polymer nanosheet. Copolymers of N-[4-(phenylazo)phenyl] acrylamide (PAZoA) with tert-pentyl acrylamide (tPA) were synthesized and the monolayers deposited on tapered quartz waveguides by Langmuir–Blodgett (LB) technique. Spectroscopic properties of the copolymer (p(tPA/PAZoA)) monolayers were monitored by integrated optical waveguide technique on the molecular level. Molecular orientation of the azobenzene was precisely determined by polarized absorption spectra. It was found that the azobenzene groups took a horizontal orientation and distributed uniformly in the p(tPA/PAZoA) monolayer without significant PAZoA aggregation. Photoisomerization process from trans to cis form was also investigated. More than half of the trans form (60–70%) was photoisomerized under unpolarized light irradiation, and the photoisomerization rate was independent on the PAZoA contents. This implies that the microenvironment of PAZoA moieties was almost the same in three different p(tPA/PAZoA) monolayers.