Soluble poly(diacetylene)s using the perfluorophenyl-phenyl motif as a supramolecular synthon

A series of diacetylene monomers with benzoyl, 4-hexylbenzoyl, 4-dodecylbenzoyl, and perfluorobenzoyl substituents were synthesized and investigated with respect to their crystal structures and polymerizability. In the absence of perfluorophenyl-phenyl interactions, the crystal structures of related alkylated and nonalkylated derivatives were substantially different and dominated by the phase segregation between the alkylated side chains and the diaryl-substituted diacetylene cores. By contrast, the perfluorophenyl-phenyl interactions served as a reliable supramolecular synthon in that they persisted in the crystal structures of different alkylated and nonalkylated derivatives. The packing of the diacetylene functions was appropriate for a topochemical polymerization in these cases, and the perfluorophenyl-phenyl interaction determined the polymerization direction. As a result, soluble alternating diacetylene copolymers were obtained which were further characterized with solution phase methods.     

Topochemical Polymerization of 1,3‐Diene Monomers and Features of Polymer Crystals as Organic Intercalation Materials

From the viewpoint of controlled polymer synthesis, topochemical polymerization based on crystal engineering is very useful for controlling not only the primary chain structures but also the higher‐order structures of the crystalline polymers. We found a new type of topochemical polymerization of muconic and sorbic acid derivatives to give stereoregular and high‐molecular weight polymers under photo‐, X‐ray, and γ‐ray irradiation of the monomer crystals. In this article, we describe detailed features and the mechanism of the topochemical polymerization of diethyl‐(Z,Z)‐muconate as well as of various alkylammonium derivatives of muconic and sorbic acids, which are 1,3‐diene mono‐ and dicarboxylic acid derivatives, to control the stereochemical structures of the polymers. The polymerization reactivity of these monomers in the crystalline state and the stereochemical structure of the polymers produced are discussed based on the concept of crystal engineering, which is a useful method to design and control the reactivity, structure, and properties of organic solids. The reactivity of the topochemical polymerization is determined by the monomer crystal structure, i.e. the monomer molecular arrangement in the crystals. Polymer crystals derived from topochemical polymerization have a high potential as new organic crystalline materials for various applications. Organic intercalation using the polymer crystals prepared from alkylammonium muconates and sorbates is also described.     

Crystal‐to‐Crystal Synthesis of Helically Ordered Polymers of Trehalose by Topochemical Polymerization

The synthesis of crystalline helical polymers of trehalose via topochemical azide–alkyne cycloaddition (TAAC) of a trehalose‐based monomer is presented. An unsymmetrical trehalose derivative having azide and alkyne crystallizes in two different forms having almost similar packing. Upon heating, both the crystals undergo TAAC reaction to form crystalline polymers. Powder X‐ray diffraction (PXRD) studies revealed that the monomers in both the crystals polymerize in a crystal‐to‐crystal fashion; circular dichroism (CD) studies of the product crystals revealed that the formed polymer is helically ordered. This solvent‐free, catalyst‐free polymerization method that eliminates the tedious purification of the polymeric product exemplifies the advantage of topochemical polymerization reaction over traditional solution‐phase polymerization.     

Two‐dimensional polymer synthesis through the topochemical polymerization of alkylenediammonium muconate as a multifunctional monomer

Here we demonstrate a unique two‐dimensional polymer synthesis through topochemical polymerization via polymer crystal engineering, which is useful for controlling and designing the polymerization reactivity as well as the polymer chain and crystal structures. We have succeeded in the synthesis of a sheet polymer through the polymerization of alkylenediammonium (Z,Z)‐muconate as a multifunctional 1,3‐diene monomer in the crystalline state under the irradiation of UV and γ‐rays or upon heating in the dark. The photopolymerization reactivity of several muconates and the structural control of the obtained polymer are described. The stereochemical structure of the polymer and the polymerization mechanism are discussed on the basis of the results of IR and NMR spectroscopy, thermogravimetric measurements, and solid‐state hydrolysis for the transformation into poly(muconic acid). © 2004 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 42: 3922–3929, 2004     

A comparative study of intermolecular interactions in the crystal structures of phenyl/phenyl end‐capped oligoanilines

Three crystal structures have been analysed from the point of view of intermolecular interactions: N,N′‐di­phenyl‐1,4‐benzo­quinone di­imine, C₁₈H₁₄N₂, (I), its reduced form N,N′‐di­phenyl‐1,4‐phenyl­enedi­amine, C₁₈H₁₆N₂, (II), and N,N′‐di­phenyl‐1,4‐phenyl­enedi­ammonium bis(p‐toluene­sulfonate), C₁₈H₁₈N₂²⁺·2C₇H₇O₃S^?, (III), which contains fully protonated (II) with p‐toluene­sulfonic acid. The local molecular C_i symmetry is preserved in all three structures and the packing seems to be dominated by the mutual arrangement of the simple polyaniline oligomers in the different protonation states. In (I), the most significant molecular interactions are stacking forces, forming columns of mol­ecules along [001]. Close packing of the columns results in C‐centring of the structure. In (II), only van der Waals interactions can be observed. In the structure of (III), the p‐toluene­sulfonate ions serve as acceptors in relatively strong N—H?O hydrogen bonds. The N,N′‐di­phenyl‐1,4‐phenyl­enedi­ammonium cation intercalates between two anions related by a centre of symmetry.     

Crystallization Force—A Density Functional Theory Concept for Revealing Intermolecular Interactions and Molecular Packing in Organic Crystals

Organic molecules are prone to polymorphic formation in the solid state due to the rich diversity of functional groups that results in comparable intermolecular interactions, which can be greatly affected by the selection of solvent and other crystallization conditions. Intermolecular interactions are typically weak forces, such as van der Waals and stronger short‐range ones including hydrogen bonding, that are believed to determine the packing of organic molecules during the crystal‐growth process. A different packing of the same molecules leads to the formation of a new crystal structure. To disclose the underlying causes that drive the molecule to have various packing motifs in the solid state, an electronic concept or function within the framework of conceptual density functional theory has been developed, namely, crystallization force. The concept aims to describe the local change in electronic structure as a result of the self‐assembly process of crystallization and may likely quantify the locality of intermolecular interactions that directs the molecular packing in a crystal. To assess the applicability of the concept, 5‐methyl‐2‐[(2‐nitrophenyl)amino]‐3‐thiophenecarbonitrile, so‐called ROY, which is known to have the largest number of solved polymorphs, has been examined. Electronic calculations were conducted on the seven available crystal structures as well as on the single molecule. The electronic structures were analyzed and crystallization force values were obtained. The results indicate that the crystallization forces are able to reveal intermolecular interactions in the crystals, in particular, the close contacts that are formed between molecules. Strong correlations exist between the total crystallization force and lattice energy of a crystal structure, further suggesting the underlying connection between the crystallization force and molecular packing.     

Intramolecular Interactions of a Phenyl/Perfluorophenyl Pair in the Formation of Supramolecular Nanofibers and Hydrogels

A new system for the incorporation of a phenyl/perfluorophenyl pair in the structure of a peptide hydrogelator was developed. The strategy is based on the idea that the integration of an end‐capped perfluorophenyl group and a phenylalanine with a phenyl moiety in the side chain forms an intramolecular phenyl/perfluorophenyl pair, which can be used to promote the formation of the supramolecular nanofibers and hydrogels. This work illustrates the importance of structure‐hydrogelation relationship and provides new insights into the design of self‐assembly nanobiomaterials.     

One‐shot synthesis of high molar mass polyurethane in supercritical carbon dioxide

Well‐defined polyurethane–polydimethylsiloxane particles of tunable diameter in the range of 0.5–20 μm were synthesized in “one‐shot” by step‐growth polymerization using supercritical carbon dioxide (scCO₂) as a dispersant medium. Polymerizations were carried out at 60 °C and above 25 MPa, after the solubility of each reactant in scCO₂ has been determined in its typical reaction concentration. The synthesis of such copolymers was achieved by polyaddition between short aliphatic diols, that is, ethylene glycol, 1,4‐butanediol (BD) or polyethylene oxide (M_n = 200 g mol^?1), and tolylene‐1,4‐di‐isocyanate (TDI) in the presence of mono or di‐isocyanate‐terminated polydimethylsiloxane (PDMS) as reactive stabilizers and dibutyltin dilaurate as a catalyst. The nature of the diol used as well as the functionality of the reactive stabilizer incorporated was found to have a dramatic effect on the molar mass and the morphology of the resulting product. Thus, copolymers obtained from the polyaddition of BD and TDI in the presence of di‐isocyanate‐terminated PDMS exhibit molar mass up to 90,000 g mol^?1. Thermal behaviors of copolymers were also examined by differential scanning calorimetry. All samples exhibited only one glass transition temperature (T_g) and were found to be totally amorphous. A logical decrease of the T_g was observed as the length of the diol incorporated increased, that is, as the density of urethane linkages within the polymer decreased. © 2007 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 45: 5649–5661, 2007     

Crystal engineering for topochemical polymerization of muconic esters using halogen-halogen and CH/pi interactions as weak intermolecular interactions

We now report the molecular and crystal structure design of muconic ester derivatives on the basis of crystal engineering using halogen-halogen contacts and CH/pi interactions. The solid-state photoreaction pathway of the dibenzyl (Z,Z)-muconates as the 1,3-diene dicarboxylic acid monomers depends on the structure of the ester groups. The substitution of a halogen atom for the aromatic hydrogen of a benzyl group induces topochemical polymerization to produce stereoregular polymers in a crystalline form, whereas the unsubstituted benzyl derivative isomerizes to yield the corresponding E,E isomer under similar conditions. The topochemical polymerization process is directly confirmed by the fact that the single-crystal structures before and after the polymerization are very similar to each other. From the crystal structure analysis for a series of substituted benzyl (Z,Z)- and (E,E)-muconates, it has been revealed that the planar diene moieties are closely packed to form a columnar structure in the crystals. The stacking of the polymerizable monomers is characterized by a stacking distance of 4.9-5.2 A along the columns. This structure is supported by a halogen-halogen interaction between the chlorine or bromine atoms introduced at the p position of the benzyl groups in addition to an aromatic stacking due to the CH/pi interaction between the benzylic methylene hydrogens and aromatic rings. The design of a monomer packing corresponds to the type and position of the introduced halogen atom and also the polymorphs. To make a stacking distance of 5 A using both halogen-halogen and CH/pi interactions as supramolecular synthons is important for the molecular design of muconic ester derivatives appropriate for topochemical polymerization.     

Designed Synthesis of a 1D Polymer in Twist‐Stacked Topology via Single‐Crystal‐to‐Single‐Crystal Polymerization

To synthesize a fully organic 1D polymer in a novel twist‐stacked topology, we designed a peptide monomer HC≡CCH₂‐NH‐Ile‐Leu‐N₃, which crystallizes with its molecules H‐bonded along a six‐fold screw axis. These H‐bonded columns pack parallelly such that molecules arrange head‐to‐tail, forming linear non‐covalent chains in planes perpendicular to the screw axis. The chains arrange parallelly to form molecular layers which twist‐stack along the screw axis. Crystals of this monomer, on heating, undergo single‐crystal‐to‐single‐crystal (SCSC) topochemical azide–alkyne cycloaddition (TAAC) polymerization to yield an exclusively 1,4‐triazole‐linked polymer in a twist‐stacked layered topology. This topologically defined polymer shows better mechanical strength and thermal stability than its unordered form, as evidenced by nanoindentation studies and thermogravimetric analysis, respectively. This work illustrates the scope of topochemical polymerizations for synthesizing polymers in pre‐decided topologies.     

Crystal structures of four δ‐keto esters and a Cambridge Structural Database analysis of cyano–halogen interactions

The revived interest in halogen bonding as a tool in pharmaceutical cocrystals and drug design has indicated that cyano–halogen interactions could play an important role. The crystal structures of four closely related δ‐keto esters, which differ only in the substitution at a single C atom (by H, OMe, Cl and Br), are compared, namely ethyl 2‐cyano‐5‐oxo‐5‐phenyl‐3‐(piperidin‐1‐yl)pent‐2‐enoate, C₁₉H₂₂N₂O₃, (1), ethyl 2‐cyano‐5‐(4‐methoxyphenyl)‐5‐oxo‐3‐(piperidin‐1‐yl)pent‐2‐enoate, C₂₀H₂₄N₂O₄, (2), ethyl 5‐(4‐chlorophenyl)‐2‐cyano‐5‐oxo‐3‐(piperidin‐1‐yl)pent‐2‐enoate, C₁₉H₂₁ClN₂O₃, (3), and the previously published ethyl 5‐(4‐bromophenyl)‐2‐cyano‐5‐oxo‐3‐(piperidin‐1‐yl)pent‐2‐enoate, C₁₉H₂₁BrN₂O₃, (4) [Maurya, Vasudev & Gupta (2013). RSC Adv. 3 , 12955–12962]. The molecular conformations are very similar, while there are differences in the molecular assemblies. Intermolecular C—H...O hydrogen bonds are found to be the primary interactions in the crystal packing and are present in all four structures. The halogenated derivatives have additional aromatic–aromatic interactions and cyano–halogen interactions, further stabilizing the molecular packing. A database analysis of cyano–halogen interactions using the Cambridge Structural Database [CSD; Groom & Allen (2014). Angew. Chem. Int. Ed. 53 , 662–671] revealed that about 13% of the organic molecular crystals containing both cyano and halogen groups have cyano–halogen interactions in their packing. Three geometric parameters for the C—X...N[triple‐bond]C interaction (X = F, Cl, Br or I), viz. the N...X distance and the C—X...N and C—N...X angles, were analysed. The results indicate that all the short cyano–halogen contacts in the CSD can be classified as halogen bonds, which are directional noncovalent interactions.     

A comparative study of two polymorphs of L‐aspartic acid hydrochloride

Two polymorphs of L‐aspartic acid hydrochloride, C₄H₈NO₄⁺·Cl⁻, were obtained from the same aqueous solution. Their crystal structures have been determined from single‐crystal data collected at 100 K. The crystal structures revealed three‐ and two‐dimensional hydrogen‐bonding networks for the triclinic and orthorhombic polymorphs, respectively. The cations and anions are connected to one another via N—H...Cl and O—H...Cl interactions and form alternating cation–anion layer‐like structures. The two polymorphs share common structural features; however, the conformations of the L‐aspartate cations and the crystal packings are different. Furthermore, the molecular packing of the orthorhombic polymorph contains more interesting interactions which seems to be a favourable factor for more efficient charge transfer within the crystal.     

Charge-transfer forces in the self-assembly of heteromolecular reactive solids: successful design of unique (single-crystal-to-single-crystal) Diels--Alder cycloadditions.

Electron donor/acceptor (EDA) interactions are found to be a versatile methodology for the engineering of reactive heteromolecular crystals. In this way, a series of the charge-transfer pi-complexes between bis(alkylimino)-1,4-dithiin acceptors and anthracene donors are shown to form heteromolecular (1:1) crystalline solids that spontaneously undergo stereoselective [2 + 4] Diels--Alder cycloadditions. The flexible nature of the 1,4-dithiin moiety allows this homogeneous topochemical transformation to proceed with minimal distortion of the crystal lattice. As a result, a unique (single) crystal phase of the Diels--Alder adduct can be produced anti-thermodynamically with a molecular arrangement very different from that in solvent-grown crystals. Such a topochemical reaction between bis(methylimino)-1,4-dithiin and anthracene proceeds thermally and homogeneously up to very high conversions without disintegration of the single crystal. This ideal case of the mono-phase topochemical conversion can be continuously monitored structurally (X-ray crystallography) and kinetically (NMR spectroscopy) throughout the entire range of the crystalline transformation. The resultant "artificial" crystal of the Diels--Alder adduct is surprisingly stable despite its different symmetry and packing mode compared to the naturally grown (thermodynamic) crystal.     

Three AgI,CuI and CdII coordination polymers based on the new asymmetrical ligand 2‐{4‐[(1H‐imidazol‐1‐yl)methyl]phenyl}‐5‐(pyridin‐4‐yl)‐1,3,4‐oxadiazole: syntheses,characterization and emission properties

The new asymmetrical organic ligand 2‐{4‐[(1H‐imidazol‐1‐yl)methyl]phenyl}‐5‐(pyridin‐4‐yl)‐1,3,4‐oxadiazole ( L , C₁₇H₁₃N₅O), containing pyridine and imidazole terminal groups, as well as potential oxdiazole coordination sites, was designed and synthesized. The coordination chemistry of L with soft Ag^I, Cu^I and Cd^II metal ions was investigated and three new coordination polymers (CPs), namely, catena‐poly[[silver(I)‐μ‐2‐{4‐[(1H‐imidazol‐1‐yl)methyl]phenyl}‐5‐(pyridin‐4‐yl)‐1,3,4‐oxadiazole] hexafluoridophosphate], {[Ag( L )]PF₆}_n, catena‐poly[[copper(I)‐di‐μ‐iodido‐copper(I)‐bis(μ‐2‐{4‐[(1H‐imidazol‐1‐yl)methyl]phenyl}‐5‐(pyridin‐4‐yl)‐1,3,4‐oxadiazole)] 1,4‐dioxane monosolvate], {[Cu₂I₂( L )₂]·C₄H₈O₂}_n, and catena‐poly[[[dinitratocopper(II)]‐bis(μ‐2‐{4‐[(1H‐imidazol‐1‐yl)methyl]phenyl}‐5‐(pyridin‐4‐yl)‐1,3,4‐oxadiazole)]–methanol–water (1/1/0.65)], {[Cd( L )₂(NO₃)₂]·2CH₄O·0.65H₂O}_n, were obtained. The experimental results show that ligand L coordinates easily with linear Ag^I, tetrahedral Cu^I and octahedral Cd^II metal atoms to form one‐dimensional polymeric structures. The intermediate oxadiazole ring does not participate in the coordination interactions with the metal ions. In all three CPs, weak π–π interactions between the nearly coplanar pyridine, oxadiazole and benzene rings play an important role in the packing of the polymeric chains.     

X-ray diffraction and theoretical studies for the quantitative assessment of intermolecular arene-perfluoroarene stacking interactions

The arene-perfluoroarene stacking interaction was studied by experimental and theoretical methods. A series of compounds with different possibilities for formation of this recognition motif in the solid state were synthesized, and their crystal structures determined by single-crystal X-ray diffraction. The crystal packing of these compounds, as well as the packing of related compounds retrieved from crystallographic databases, were analyzed with quantitative crystal potentials: total lattice energies and the cohesive energies of closest molecular pairs in the crystals were calculated. The arene-perfluoroarene recognition motif emerges as a dominant interaction in the non-hydrogen-bonding compounds studied here, to the point that asymmetric dimers formed over the stacking motif carry over to asymmetric units made of two molecules in the crystal both for pure compounds and for molecular complexes; however, inter-ring distances and angles range from 3.70 to 4.85 A and from 5 to 21 degrees , respectively. Pixel energy partitioning reveals that whenever aromatic rings stack, the largest cohesive energy contribution comes from dispersion, which roughly amounts to 20 kJ mol(-1) per phenyl ring, while the coulombic term is minor but significant enough to make a difference between the arene-arene or perfluoroarene-perfluoroarene interactions on the one hand, and arene-perfluoroarene interactions on the other, whereby the latter are favored by about 10 kJ mol(-1) per phenyl ring. No evidence of special interaction which can be attributed to HF confrontation was recognizable.     

Novel synthesis of reactive polycarbonates with pendant chloromethyl groups by the polyaddition of bis(oxetane)s with 2,2′‐bis[(4‐chloroformyl)oxyphenyl]propane

The polyaddition of 1,4‐bis[(3‐ethyl‐3‐oxetanyl)methoxymethyl]benzene with 2,2′‐bis[(4‐chloroformyl)oxyphenyl]propane was examined with quaternary onium salts as catalysts. When the polyaddition was carried out with tetrabutylphosphonium bromide in chlorobenzene at 120 °C for 24 h, the corresponding poly(alkyl aryl carbonate) with a high molecular weight (number‐average molecular weight = 16,700) was obtained in an almost quantitative yield. It was found from the ¹H NMR and ¹³C NMR spectra of the obtained polymer that the addition reaction proceeded without any side reactions, providing the polycarbonate with pendant chloromethyl groups in the side chain. The polyaddition of bis{[3‐(3‐ethyloxetanyl)]methyl}terephthalate also proceeded smoothly and gave the corresponding polycarbonate with high molecular weight in a good yield. © 2003 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 41: 2304–2311, 2003     

Synthesis of asymmetrically substituted head‐to‐head polyacetylenes from 2,3‐disubstituted‐1,3‐butadienes

Asymmetrically substituted head‐to‐head polyacetylenes with phenyl and triphenylamine, thienyl or pyrenyl side groups were synthesized through anionic or controlled radical polymerization of 2,3‐disubstituted‐1,3‐butadienes and subsequent dehydrogenation process. Anionic polymerizations of the designed monomers bearing pendent triphenylamine and thienyl group gave narrow disperse disubstituted precursor polybutadienes with exclusive 1,4‐ or 4,1‐structure, which were confirmed by GPC and NMR measurements. In addition, the monomers possessing pyrenyl group were polymerized via nitroxide mediated radical polymerization and the resulting polymers were obtained with controlled molecular weight and low polydispersities. These polybutadiene precursors were then dehydrogenated in the presence of 2,3‐dichloro‐5,6‐dicyano‐1,4‐benzoquinone. Thus asymmetrically substituted head‐to‐head polyacetylenes were obtained as indicated by ¹H NMR. The properties of polybutadiene precursors and the corresponding polyacetylenes were analyzed by UV–vis, DSC, and TGA. © 2018 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2019 , 57, 395–402     

Click Chemistry Derived Pyridazines: Electron‐Deficient Building Blocks with Defined Conformation and Packing Structure

A series of 3,6‐bis(4‐triazolyl)pyridazines equipped with terminal phenyl substituents with varying degree of fluorination were synthesized by using the facile copper‐catalyzed azide–alkyne cycloaddition and their structures were thoroughly investigated in the gas phase, in solution, and in the solid state by employing DFT calculations, NMR spectroscopy, and single‐crystal X‐ray diffraction, respectively. On the molecular level, their structure is governed by the strong preference of the triazole‐pyridazine linkages for the anti ‐conformation. The supramolecular organization of the molecules in the crystalline solid is controlled by π‐stacking, C−H⋅⋅⋅π as well as C−F⋅⋅⋅H interactions. The latter can conveniently be tuned by the number and position of fluorine substituents in the terminal phenyl units, giving rise to either herringbone‐like, 1D or 2D lamellar packing. Electrochemistry and optical spectroscopy of all compounds suggest that they might find use as electron‐transporting/hole‐blocking materials in organic electronics.     

Solid‐State Behaviour of the Dichlorobenzenes: Actual,Semi‐Virtual and Virtual Crystallography

The crystal structures of the low‐melting 1,2‐ and 1,3‐dichlorobenzene isomers have been determined by X‐ray analysis and in situ crystallisation techniques. Attempts to predict these structures in advance by force‐field calculations were not successful, although the known crystal structures of two of the three polymorphs of the 1,4‐isomer were successfully `a posteriori' predicted. Calculated lattice energies were supplemented with estimated lattice‐vibrational entropies obtained in the rigid‐body approximation. Energy calculations for actual and virtual crystal structures indicate that the higher melting point of the 1,4‐isomer can be largely attributed to more efficient crystal packing.     

Crystal Structure and Spectroscopic Characterization of Zinc(II) and Mercury(II) Complexes of N‐(Pyridin‐2‐ylmethylene)benzene‐1,4‐diamine

The behavior of N,N′‐bis(pyridin‐2‐ylmethylene)benzene‐1,4‐diamine (L) towards zinc(II), cadmium(II), and mercury(II) chlorides was studied in methanol solutions. In the presence of metal ions, the organic molecule was decomposed to N‐(pyridin‐2‐ylmethylene)benzene‐1,4‐diamine (L′), and complexes of general formula M(L′)Cl₂ were isolated from the mixture. The complexes were identified by elemental analysis, IR, ¹H NMR, and ¹³C NMR spectra, and their structures were further confirmed by single‐crystal X‐ray diffraction analysis of Zn(L′)Cl₂ and Hg(L′)Cl₂. In the solid state of both complexes, the molecules are stabilized by N–H ··· Cl hydrogen bonds and aromatic π–π stacking interactions.