Weak Intermolecular Hydrogen Bonds with Fluorine: Detection and Implications for Enzymatic/Chemical Reactions,Chemical Properties,and Ligand/Protein Fluorine NMR Screening

It is known that strong hydrogen‐bonding interactions play an important role in many chemical and biological systems. However, weak or very weak hydrogen bonds, which are often difficult to detect and characterize, may also be relevant in many recognition and reaction processes. Fluorine serving as a hydrogen‐bond acceptor has been the subject of many controversial discussions and there are different opinions about it. It now appears that there is compelling experimental evidence for the involvement of fluorine in weak intramolecular or intermolecular hydrogen bonds. Using established NMR methods, we have previously characterized and measured the strengths of intermolecular hydrogen‐bond complexes involving the fluorine moieties CH₂F, CHF₂, and CF₃, and have compared them with the well‐known hydrogen‐bond complex formed between acetophenone and the strong hydrogen‐bond donor p‐fluorophenol. We now report evidence for the formation of hydrogen bonds involving fluorine with significantly weaker donors, namely 5‐fluoroindole and water. A simple NMR method is proposed for the simultaneous measurement of the strengths of hydrogen bonds between an acceptor and a donor or water. Important implications of these results for enzymatic/chemical reactions involving fluorine, for chemical and physical properties, and for ligand/protein ¹⁹F NMR screening are analyzed through experiments and theoretical simulations.     

13C and19F NMR study of α,β-difluorostyryl derivatives of transition metal carbonylates. A method of signal assignment based on the carbon—fluorine spin-spin coupling constants

The¹³C and¹⁹F NMR spectra ofZ- andE-isomers of β-X-substituted α,β-difluorostyrenes (X=F, Cl, CpFe(CO)₂, Re(CO)₅, Re₂(CO)₉Na) were studied. Direct and long-range (across 1–5 bonds) spin-spin coupling constants and the (¹³C−¹²C) isotope shifts in the¹⁹F NMR spectra were determined. The study of the¹³C satellites in the¹⁹F NMR spectra of substituted difluorostyrenes permitted assignment of the¹³C NMR signals of the vinylic carbon atoms. Similarly, the signals in¹⁹F NMR spectra were assigned based on coupling constants of fluorine withipso-carbon. These assignments were found to be in good agreement with the data available from the literature (X=F, Cl). The developed approach was applied to the elucidation of the structure ofZ−PhCF=CClFe(CO)₂Cp. Translated fromIzvestiya Akademii Nauk, Seriya Khimicheskaya. No. 8, pp. 1575–1579, August, 1998.     

Chemical bonding and molecular dynamics in inclusion compounds of fluorinated graphite according to 19F NMR spectroscopy data

In Inclusion compounds of fluorinated graphite with chlorine trifluoride C₂. xClF₃ and hexafluoro-benzene C₂F. xC₆F₆ , the guest molecules are characterized by rotational mobility and weak bonds with the host matrix. ¹⁹F NMR chemical shift tensors are determined for the fluorine nuclei of the matrix and the guest molecules, including the structurally nonequivalent fluorine atoms ofClFj molecules [δ (Fl) = −700, δ(F1) = −280; δ|| (F2) = −440, δ±(F₂) = −220ppm relative to F2]. It is shown that C-F bonds in the host matrix are close to those in aromatic fluorocarbons. Translated from Zhumal Stmktumoi Khimii, Vol. 41, No. 1, pp. 80-85, January–February, 2000.     

Destruction of aspen wood by the fungusPhanerochaete sanguinea quantitative1H and13C NMR spectroscopies of biologically degraded lignin

The lignin of mechanically ground aspen wood and lignins isolated from aspen wood attacked by the fungusPhanerochaete sanguinea have been investigated by quantitative¹H and¹³C NMR spectroscopies. It has been shown that the biodestruction of the lignin takes place through the cleavage of alkyl-aryl and aryl-aryl bonds and is accompanied by demethylation (demethoxylation) reactions, and the oxidation of C_α and C_γ atoms. In addition to reactions in which the C—C bonds are cleaved, the formation of ether bonds has been observed. An interconnection has been shown between the variations in the amount of functional groups, fragments, and the bonds in biolignins and the loss in mass of the wood. A method is proposed for evaluating the carbohydrate content in lignin preparations using the NMR method.     

Syntheses of polyfluoroalkyl aryl ether

The reactions of methoxyphenol and dihydroxybenzene with hexafluoropropene were studied. Eight new compounds 2-9 were separated from the reaction mixture of catechol and hexafluoropropene. The formation of these products was explained through nucleophilic attack of the aryloxy anion on hexafluoropropene, followed by elimination and addition (Scheme 1). However, the reaction of resorcinol and hydroquinone with C₃F₄ only gave the simple addition products 10 and addition-elimination products Z, E-11, 12. All new compounds were characterized by ¹H and ¹⁹F NMR, IR, MS and elemental analyses. The ¹⁹F NMR of seven membered ring compounds 4 and 5 were discussed in detail.     

Magnesium Hexafluoridozirconates MgZrF6·5H2O,MgZrF6·2H2O,and MgZrF6: Structures,Phase Transitions,and Internal Mobility of Water Molecules

The MgZrF₆ · n H₂O (n = 5, 2 and 0) compounds were studied by the methods of X‐ray diffraction and ¹⁹F, MAS ¹⁹F, and ¹H NMR spectroscopy. At room temperature, the compound MgZrF₆ · 5H₂O has a monoclinic C‐centered unit cell and is composed of isolated chains of edge‐sharing ZrF₈ dodecahedra reinforced with MgF₂(H₂O)₄ octahedra and uncoordinated H₂O molecules and characterized by a disordered system of hydrogen bonds. In the temperature range 259 to 255 K, a reversible monoclinic ? two‐domain triclinic phase transition is observed. The phase transition is accompanied with ordering of hydrogen atoms positions and the system of hydrogen bonds. The structure of MgZrF₆ · 2H₂O comprises a three‐dimensional framework consisting of chains of edge‐sharing ZrF₈ dodecahedra linked to each other through MgF₄(H₂O)₂ octahedra. The compound MgZrF₆ belongs to the NaSbF₆ type and is built from regular ZrF₆ and MgF₆ octahedra linked into a three‐dimensional framework through linear Zr–F–Mg bridges. The peaks in ¹⁹F MAS spectra were attributed to the fluorine structural positions. The motions of structural water molecules were studied by variable‐temperature ¹H NMR spectroscopy.     

Destruction of aspen wood by the fungusPhanerochaete sanguinea quantitative1H and13C NMR spectroscopies of biologically degraded lignin

The lignin of mechanically ground aspen wood and lignins isolated from aspen wood attacked by the fungusPhanerochaete sanguinea have been investigated by quantitative¹H and¹³C NMR spectroscopies. It has been shown that the biodestruction of the lignin takes place through the cleavage of alkyl-aryl and aryl-aryl bonds and is accompanied by demethylation (demethoxylation) reactions, and the oxidation of C and C atoms. In addition to reactions in which the C—C bonds are cleaved, the formation of ether bonds has been observed. An interconnection has been shown between the variations in the amount of functional groups, fragments, and the bonds in biolignins and the loss in mass of the wood. A method is proposed for evaluating the carbohydrate content in lignin preparations using the NMR method.Wood Chemistry Branch of the Institute of Organic Chemistry, Siberian Division of the Russian Academy of Sciences, Irkutsk. Irkutsk State University. Translated from Khimiya Prirodnykh Soedinenii, No. 4, pp. 547–557, July–August, 1994.     

13C and 19F NMR substituent chemical shifts (SCS) of some bridgehead-substituted phenyl- and fluorophenylbicyclo [2.2.2] octyltricarbonylchromium(O) derivatives: nature of aryl 19F NMR polar field effects in the Cr(CO)3-complexed benzene ring system

A number of Cr(CO)₃ complexes of bridgehead-substituted phenylbicyclo[2.2.2]octanes and (m- and p-)fluoropheylbicyclo[2.2.2]octanes have been synthesized and their ¹³C and ¹⁹F NMR spectra have been recorded, respectively. The substituent chemical shifts (SCS) of these stereochemically well-defined model systems permit an unambiguous evaluation of polar factors governing ¹³C and ¹⁹F SCS in arene-Cr(CO)₃ complexes. The dual nature of ¹⁹F NMR polar field effects is reaffirmed and the coefficient (A) of the Buckingham equation for linear electric field effects on C(sp²)F bonds in fluoroarene-Cr(CO)₃ complexes has been calculated. A re-examination and re-interpretation of the ¹⁹F chemical shifts of m- and p-substituted fluorophenyltricarbonylchromium derivatives is also reported. New substituent parameters (σ_I and σ^o_R) for C₆H₅ · Cr(CO)₃ as a substituent in the neutral ground state arepresented.     

19F NMR study of the polarization direction and polarity of tin-hydrogen and tin-transition metal bonds in tris(4-fluorophenyl)stannane and its organometallic derivatives

A series of (4-FC₆H₄)₃SnML _n compounds containing tin-transition metal bonds were synthesized. Based on¹⁹F NMR data for these compounds, (4-FC₆H₄)₃SnSn(C₆H₄F-4)₃, and (4-FC₆H₄)₃SnH, conclusions were drawn concerning the polarization direction and relative polarity of the tin-hydrogen and tin-metal bonds in the above compounds and in the hydrides L _n MH and R₃SnH. It was found that, in the general case, the group electronegativities of the L _n M groups do not vary similarly to the electronegativities of the central metal atoms.Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 11, pp. 1933–1937, November, 1994.     

Synthesis and complex study of potassium ammonium hexafluorozirconates: Ion mobility, phase transitions, and ionic conductivity in K2−n (NH4)nZrF6 compounds as probed by NMR, DTA, and impedance spectroscopy

The mobility of the fluoride and ammonium ions (180–480 K) in K_2?n (NH₄)_nZrF₆ compounds (0.2 ≤ n ≤ 1.80) has been studied by ¹⁹F and ¹H NMR. Correlations between the composition of the cationic sublattice, the character of ion motions, and the phase-transition temperature in these compounds have been established. The high-temperature modifications of compounds with n ≥ 1 are characterized by translational diffusion of ions in the fluoride and ammonium sublattices, and their ¹⁹F NMR spectra are characterized by uniaxial chemical shift anisotropy. The electrophysical properties of these compounds are studied in the range 300–480 K.     

Monofluoroalkene-Isostere as a 19F NMR Label for the Peptide Backbone: Synthesis and Evaluation in Membrane-Bound PGLa and (KIGAKI)3

Solid-state ¹⁹F NMR is a powerful method to study the interactions of biologically active peptides with membranes. So far, in labelled peptides, the ¹⁹F-reporter group has always been installed on the side chain of an amino acid. Given the fact that monofluoroalkenes are non-hydrolyzable peptide bond mimics, we have synthesized a monofluoroalkene-based dipeptide isostere, Val-Ψ[(Z)-CF=CH]-Gly, and inserted it in the sequence of two well-studied antimicrobial peptides: PGLa and (KIGAKI)₃ are representatives of an α-helix and a β-sheet. The conformations and biological activities of these labeled peptides were studied to assess the suitability of monofluoroalkenes for ¹⁹F NMR structure analysis.     

19F, 13C NMR analysis of an oxygen carrier,perfluorotributylamine, and perfluoropentanoic acid

NMR relaxation measurement of perfluorocarbons (PFCs), such as perfluorotributylamine (FTBA), is a convenient method for the determination of oxygen concentrations in tissues and tumors. Previous relaxation studies of FTBA used different ¹⁹F NMR assignments causing some confusion. Fluorine‐detected ¹⁹F, ¹³C HMQC and HMBC and selectively ¹⁹F‐decoupled ¹³C NMR provided unequivocal ¹⁹F and ¹³C assignments for FTBA and perfluoropentanoic acid (FPA). Based on those assignments, ¹³C spin–lattice relaxation time constants (T₁) and effective correlation times for FTBA and FPA are reported and discussed. Copyright © 2003 John Wiley & Sons, Ltd.     

NMR and DFT study of chemical bonding of the titanyl ion in pentafluoro complexes (NH4)3TiOF5 and Rb2KTiOF5

19F NMR and DFT methods are used to study the electronic structure and chemical bonding of titanyl ions in pentafluoro titanyl complexes (NH₄)₃TiOF₅ and Rb₂KTiOF₅. The experimental values of the anisotropy of ¹⁹F NMR chemical shifts (CSs) are shown to be consistent with the calculated parameters within the DFT method. At normal temperatures orientational disordering of octahedral [TiOF₅]^3- anions occurs, fluorine atoms steadily occupying cis- and trans-positions with respect to the O^2- ion. In both complexes, trans-position is not fully occupied; the occupation ratio does not exceed ~4:0.9. When the temperature is decreased to 150 K, the value of the CS anisotropy of the fluorine atom resonance line in trans-position is found to be smaller than the dipole-dipole broadening, whereas the line from fluorine atoms in cis-positions transforms into an asymmetric broad line characterized by the triaxial anisotropy of the CS tensor. It is shown that the found anisotropy corresponds to violation of the axial symmetry of Ti—F cis bonds because of strong delocalization of the electron density of Ti—O bonds in the titanyl ion.     

Fluorination reactions of UF6

Uranium hexafluoride is known to be an oxidative fluorinating agent, frequently breaking CC bonds and oxidizing many elements to a higher oxidation state. This work will compare the behavior of UF₆ to that of two other fluorinating agents, WF₆ and SF₄, which are for the most part non-oxidative.The reactions of UF₆ with a number of quite simple organic compounds have been studied; alcohols, aldehydes, ketones, acids, acid halides, ethers, olefins, and alkanes are included. The reactions of WF₆ and SF₄ with these compounds were investigated also when no data existed in the literature. The primary tool was ¹⁹F NMR, assisted by ¹H NMR, infrared, powder diffraction, thermogravimetry and elemental analysis when needed.The differences in behavior of the three agents with respect to the same compounds will be emphasized.     

2D-NMR studies of a model for Krytox® fluoropolymers

Multiple two‐dimensional nuclear magnetic resonance (2D‐NMR) techniques have been used to study the structures of Krytox^® perfluoro(polyalkyl ether) and its mechanism of polymerization. Model compound K₄, containing four Krytox^® fluoropolymer repeat units, was analyzed to interpret the multiplet patterns in the NMR spectra from the polymer model. ¹⁹F {¹³C}‐Heteronuclear single‐quantum correlation experiments, performed with delays optimized for ¹J_CF and ²J_CF, provided spectra that permitted identification of resonances from individual monomer units. Selective, ¹⁹F‐¹⁹F COSY 2D‐NMR experiments were performed with different excitation regions; these experiments were combined with selective inversion pulses to remove ¹⁹F‐¹⁹F J couplings in the f₁ dimension. The resulting COSY spectra were greatly simplified compared with standard ¹⁹F‐¹⁹F COSY spectra, which are too complicated to interpret. They give information regarding the attachments of monomer units and also provide insights into the nature of the stereoisomers that might be present in the polymer. Both infrared and NMR spectra show peaks identifying chain end structures. With the help of these studies, resonances can be assigned, and the average number of repeat units in the polymer chain can be calculated based on the assignments obtained. Copyright © 2011 John Wiley & Sons, Ltd.     

Five-coordinate pentafluorobenzothiolate osmium(IV) complexes [Os(SC6F5)4(P(C6H4X-4)3)] (X = OCH3, CH3, F, Cl or CF3): Solid and solution structural characterization

The reactions of OsO₄ with excess of HSC₆F₅ and P(C₆H₄X-4)₃ in ethanol afford the five-coordinate compounds [Os(SC₆F₅)₄(P(C₆H₄X-4)₃)] where X = OCH₃ 1a and 1b, CH₃ 2a and 2b, F 3a and 3b, Cl 4a and 4b or CF₃ 5a and 5b. Single crystal X-ray diffraction studies of 1 to 5 exhibit a common pattern with an osmium center in a trigonal-bipyramidal coordination arrangement. The axial positions are occupied by mutually trans thiolate and phosphane ligands, while the remaining three equatorial positions are occupied by three thiolate ligands. The three pentafluorophenyl rings of the equatorial ligands are directed upwards, away from the axial phosphane ligand in the arrangement “3-up” (isomers a). On the other hand, ³¹P{¹H} and ¹⁹F NMR studies at room temperature reveal the presence of two isomers in solution: The “3-up” isomer (a) with the three C₆F₅-rings of the equatorial ligands directed towards the axial thiolate ligand, and the “2-up, 1-down” isomer (b) with two C₆F₅-rings of the equatorial ligands directed towards the axial thiolate and the C₆F₅-ring of the third equatorial ligand directed towards the axial phosphane. Bidimensional ¹⁹F–¹⁹F NMR studies encompass the two sub-spectra for the isomers a (“3-up”) and b (“2-up, 1-down”). Variable temperature ¹⁹F NMR experiments showed that these isomers are fluxional. Thus, the ¹⁹F NMR sub-spectra for the “2-up, 1-down” isomers (b) at room temperature indicate that the two S-C₆F₅ ligands in the 2-up equatorial positions have restricted rotation about their C–S bonds, but this rotation becomes free as the temperature increases. Room temperature ¹⁹F NMR spectra of 3 and 5 also indicate restricted rotation around the Os–P bonds in the “2-up, 1-down” isomers (b). In addition, as the temperature increases, the ¹⁹F NMR spectra tend to be consistent with an increased rate of the isomeric exchange. Variable temperature ³¹P{¹H} NMR studies also confirm that, as the temperature is increased, the a and b isomeric exchange becomes fast on the NMR time scale.     

Evaluation of the reactivity of new activated difluoroaromatic compounds

To evaluate the reactivity of new difluroroaromatic compounds in nucleophilic substitution, the positive charges on carbon atoms of C−F bonds were calculated using the quantum-chemical semiempirical PM3 method. A correlation between the charges calculated and the chemical shifts in the¹⁹F NMR spectra was established. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 4, pp. 623–625, April, 1998.     

Ionic mobility and structure of fluorozirconates Rb2? x (NH4) x ZrF6 ( x > 1.5) by NMR, x-ray structure analysis, and impedance spectroscopy

The ionic mobility in the temperature interval 180 to 480 K, structure, and electrophysical properties of rubidium-ammonium hexafluorozirconates Rb_2−x (NH₄) _x ZrF₆ (1.5 ≤ x ≤ 2.0) are studied by methods of the ¹⁹F, ¹H NMR spectroscopy, x-ray structure analysis, differential thermal analysis, and impedance spectroscopy. Correlations between the composition of the cationic sublattice, the character of ionic motions, and the phase transition temperature (of the type order-disorder) are established in these compounds. The salient feature of the high-temperature modifications of these fluorozirconates with x ≥ 1.5 is the translation diffusion of ions inside the fluoride and ammonium sublattices and the ¹⁹F NMR spectra are characterized by monoaxial anisotropy of the magnetic shielding tensor of the fluorine nuclei. Fluorozirconates with x > 1.5 are shown to belong with the structural type (NH₄)₂ZrF₆. The rubidium cations isomorphically replace the ammonium cations. The electrophysical characteristics of the compounds are examined in the temperature interval 300 to 480 K. It is established that the electroconductivity of these compounds increases with x. Original Russian Text ? V.Ya. Kavun, A.V. Gerasimenko, A.B. Slobodyuk, N.A. Didenko, N.F. Uvarov, V.I. Sergienko, 2007, published in Elektrokhimiya, 2007, Vol. 43, No. 5, pp. 563–570. Based on the paper delivered at the 8th Meeting “Fundamental Problems of Solid-State Ionics”, Chernogolovka (Russia), 2006.     

Long-range13C—19F NMR spin-spin coupling in some α-trifluoromethyl-substituted polychloropyridines

High resolution¹³C NMR spectra of a series of -trifluoromethyl-substituted polychloropyridines were studied. Long-range¹³C—¹⁹F NMR spin-spin coupling through four and five bonds involving carbon atoms of the pyridine ring and the fluorine atom of the CF₃ group was found.Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 10, pp. 1973–1974, October, 1995.     

F and H nmr spectra, ionic mobility, and phase transitions in thallium(i)/ammonium hexafluorohafnates

Ionic mobility in (NH₄)₂HfF₆ (I), Tl₂HfF₆ (II), and NH₄TlHfF₆ (III)has been studied by ¹H and¹⁹F NMR in the temperature range 160-440 K. Types of ionic motion are determined, and activation energies are estimated. Phase transitions are found at ≈390 and ≈365 K forII and III. Compounds I and III are assumed to be superionic conductors in the temperature range 370-420 K. Translated fromZhurnal Strukturnoi Khimii, Vol. 41, No. 4, pp. 730-736, July-August, 2000 We are grateful to V. B. Logvinova for performing syntheses of the compounds. This work was supported by RFFR grant Nos. 99-03-32672a and 99-03-32477.