Heterodimeric versus homodimeric structure of the primary electron donor in Rhodobacter sphaeroides reaction centers genetically modified at position M202

Using light-induced Fourier-transform infrared (FTIR) difference spectroscopy of the photo-oxidation of the primary donor (P) in chromatophores from Rhodobacter sphaeroides, we examined a series of site-directed mutants with His M202 changed to Gly, Ser, Cys, Asn or Glu in order to assess the ability of these side chains to ligate the Mg atom of one of the two bacteriochlorophylls (BChl) constituting P. In the P+QA-/PQA FTIR difference spectra of the mutants HG(M202), HS(M202), HC(M202) and HN(M202), the presence of a specific electronic transition at approximately 2650-2750 cm-1 as well as of associated vibrational (phase-phonon) bands at approximately 1560, 1480 and 1290 cm-1 demonstrate that these mutants contain a BChl/BChl homodimer like that in native reaction centers with the charge on P+ shared between the two coupled BChl. In contrast, the absence of all of these bands in HE(M202) shows that this mutant contains a BChl/bacteriopheophytin heterodimer with the charge localized on the single BChl, as previously determined for the mutant HL(M202). Furthermore, the spectra of the heterodimers HE(M202) and HL(M202) are very similar in the 4000-1200 cm-1 IR range. Perturbations of the 10a-ester and 9-keto carbonyl modes for both the P and P+ states are observed in the homodimer mutants reflecting slight variations in the conformation and/or in position of P. These perturbations are likely to be due to a repositioning of the dimer in the new protein cavity generated by the mutation.     

对硝基苯酚在质子惰性溶剂中的氧化还原机理

利用现场红外光谱电化学法、红外光谱循环伏吸法(CVA)和导数循环伏吸法(DCVA)研究了对硝基苯酚(PNP)在乙腈中的氧化还原机理,并结合B3LYP方法在6-311++G*水平上计算得出反应中自由基阴离子和二聚体可能的结构.通过循环伏安曲线(CV)和快速扫描红外光谱验证了在电化学还原过程中PNP在乙腈溶剂中发生较复杂的自质子化反应,并且PNP的电化学行为受其浓度的影响.当PNP浓度较高时,PNP在还原成自由基阴离子后发生自质子化作用,然后自由基阴离子与质子化产物得到电子发生二聚反应,随后PNP阴离子还原成二价阴离子;当PNP浓度较低时,电化学还原机理会发生改变,二聚现象消失,阴离子自由基继续还原.     

Probing the Electronic Structure of Bacteriochlorophyll Radical Ions—A Theoretical Study of the Effect of Substituents on Hyperfine Parameters

In reaction centers (RCs) of photosynthesis, a light‐induced charge separation takes place creating radical cations and anions of the participating cofactors. In photosynthetic bacteria, different bacteriochlorophylls (BChl) are involved in this process. Information about the electronic structure of the BChl radical cations and anions can be obtained by measuring the electron spin density distribution via the electron–nuclear hyperfine interaction using EPR and ENDOR techniques. In this communication, we report isotropic hyperfine coupling constants (hfcs) of the BChl b and g radical cations and anions, calculated by density functional theory, and compare them with the more common radical ions of BChl a and with available experimental data. The observed differences in the computed hyperfine data are discussed in view of a possible distinction between these species by EPR/ENDOR methods. In addition, ¹⁴N nuclear quadrupole coupling constants (nqcs) computed for BChl a, b, g, and also for Chl a in their charge neutral, radical cation and radical anion states are presented. These nqcs are compared with experimental values obtained by ESEEM spectroscopy on several different radical ions.     

In situ FTIR spectroscopic study of ethanol oxidation on Pt(111)/Rh/Sn surface. The anion effect

In situ Fourier Transform Infrared (FTIR) spectroscopy was used to study the anion effect in ethanol oxidation on Pt (111) surface modified by rhodium and tin, Pt(111)/Rh/Sn. The in situ FTIR spectra showed that ethanol oxidation reaction pathway is strongly influenced by the nature of the electrolyte anion. In perchloric and sulfuric acid electrolytes were observed the formation of acetaldehyde, acetic acid and CO₂; however in phosphoric acid the acetic acid is not observed. The sulfuric acid is the most favorable electrolyte for acetaldehyde and CO₂ formation.     

A Resin-Supported Formate Catalyst for the Transformative Reduction of Carbon Dioxide with Hydrosilanes

A heterogeneous formate anion catalyst for the transformative reduction of carbon dioxide (CO₂) based on a polystyrene and divinylbenzene copolymer modified with alkylammonium formate was prepared from a widely available anion exchange resin. The catalyst preparation was easy and the characterization was carried out by using elemental analysis, Fourier transform infrared (FTIR) spectroscopy, X-ray photoelectron spectroscopy (XPS), and solid-state ¹³C cross-polarization/magic-angle spinning nuclear magnetic resonance (¹³C CP/MAS NMR) spectroscopy. The catalyst displayed good catalytic activity for the direct reduction of CO₂ with hydrosilanes, tunably yielding silylformate or methoxysilane products depending on the hydrosilanes used. The catalyst was also active for the reductive insertion of CO₂ into both primary and secondary amines. The catalytic activity of the resin-supported formate can be predicted from the FTIR spectra of the catalyst, probably because of the difference in the ionic interaction strength between the supported alkylammonium cations and formate anions. The ion pair density is thought to influence the catalytic activity, as shown by the elemental and solid-state ¹³C NMR analyses.     

Polychlorobiphenyls differentiation and identification by gas chromatography/fourier transform infrared spectroscopy

Reference infrared vapour phase spectra of 20 polychlorobiphenyls (PCBs) have been obtained by gas chromatography/Fourier transform infrared spectroscopy (GC/FTIR). These spectra are consistent with those of PCB obtained by diffuse reflectance IR spectroscopy (DRIFT) and with those of more simple molecular structures (iodochlorobenzenes, 1-bromodichlorobenzenes). The IR frequencies of the GC/FTIR spectra of PCB are assigned in terms of substitution patterns. This work shows that GC/FTIR can be a good approach for differentiation and identification of PCB in complex mixtures.     

Effect of conformational changes on a one-electron reduction process: evidence of a one-electron P-P bond formation in a bis(phosphinine)

EPR spectra show that one-electron reduction of bis(3-phenyl-6,6-(trimethylsilyl)phosphinine-2-yl)dimethylsilane (1) on an alkali mirror leads to a radical anion that is localized on a single phosphinine ring, whereas the radical anion formed from the same reaction in the presence of cryptand or from an electron transfer with sodium naphthalenide is delocalized on the two phosphinine rings. Density functional theory (DFT) calculations show that in the last species the unpaired electron is mainly confined in a loose P-P bond (3.479 A), which results from the overlap of two phosphorus p orbitals. In contrast, as attested by X-ray spectroscopy, the P-P distance in neutral 1 is large (5.8 A). As shown by crystal structure analysis, addition of a second electron leads to the formation of a classical P-P single bond (P-P 2.389 A). Spectral modifications induced by the presence of cryptand or by a change in the reaction temperature are consistent with the formation of a tight ion pair that stabilizes the radical structure localized on a single phosphinine ring. It is suggested that the structure of this pair hinders internal rotation around the C-Si bonds and prevents 1 from adopting a conformation that shortens the intramolecular P-P distance. The ability of the phosphinine radical anion to reversibly form weak P-P bonds with neutral phosphinines in the absence of steric hindrance is confirmed by EPR spectra obtained for 2,6-bis(trimethylsilyl)-3-phenylphosphinine (2). Moreover, as shown by NMR spectroscopy, in this system, which contains only one phosphinine ring, further reduction leads to an intermolecular reaction with the formation of a classical P-P bond.     

偏最小二乘法在红外光谱识别茶叶中的应用

采用漫反射傅立叶变换红外光谱(FTIR)法结合主成分分析(PCA)、偏最小二乘法(PLS)、簇类的独立软模式(SIMCA)识别法对十三种茶叶进行了分类判别研究。研究结果表明,通过多元散射校正(MSC)对原始光谱进行预处理,可以提高模式识别技术的分类判别效果。在此基础上,选取1 900~900 cm-1波长范围内的茶叶红外光谱建立识别模型,三种方法都得到了满意的分类判别效果。在对检验集中全部130个样本的判别中,PCA仅有两类样本无法判别,SIMCA的识别率和拒绝率都在90%以上,而PLS的识别效果最佳,全部样本都得到了正确的归类。这一研究结果表明傅立叶变换红外光谱法与化学计量学方法相结合可以实现茶叶品种的快速鉴别,这为茶叶的客观评审提供了一种新思路。     

Mercury photosensitization of toluene vapor and aerosol formation

The triplet-mercury photosensitized decomposition of toluene vapor was performed at 298 K to determine the nature of the aerosols formed. The major product was bibenzyl, which was identified by gas chromatography—mass spectrometry, Fourier transform IR spectroscopy (FTIR) and ¹³C and ¹H nuclear magnetic resonance spectroscopy, and its quantum yield was 1.05 × 10⁻². Other products identified included methane, benzene and dimeric species. Aerosols were analyzed in situ by FTIR spectrometry and their FTIR spectra shown to correspond to bibenzyl. The rates of aerosol formation at different substrate pressures were studied using a laser light extinction photometer and shown to correlate linearly with the rate of bibenzyl formation. The average aerosol particle radii determined from differential settling measurements were 0.23, 0.30, and 0.43 μm at toluene pressures of 10 Torr, 15 Torr and 20 Torr respectively. Scanning electron microscopy measurements corroborated the particle sizes deduced from the light extinction measurements. Finally, ab initio molecular orbital calculations using the 3-21G basis set found Hartree—Fock energies of the ¹A′ and ³A′ states of toluene and the benzyl radical plus hydrogen atom, anticipated dissociation products, to be −268.24022 a.u., −268.13720 a.u., and −268.13738 a.u. respectively. The benzene ring is significantly distorted in the triplet state, suggesting that considerable vibrational excitation occurs upon intersystem crossing. The benzyl radical is planar, as expected. Optimized geometries are reported.     

Photoinduced Color Change and Photomechanical Effect of Naphthalene Diimides Bearing Alkylamine Moieties in the Solid State

Photoinduced color change of naphthalene diimides (NDIs) bearing alkylamine moieties has been observed in the solid state. The color change is attributed to the generation of a NDI radical‐anion species, which may be formed through a photoinduced electron‐transfer process from the alkylamine moiety to the NDI. The photosensitivity of NDIs is highly dependent on the structures of the alkylamine moieties. Crystallographic analysis, kinetic analysis, UV/Vis/NIR spectroscopic measurements, and analysis of the photoproduct suggested that a radical anion was formed through an irreversible process initiated by proton abstraction between an amine radical cation and the neutral amine moiety. The radical anions formed stacks including mixed‐valence stacks and radical‐anion stacks, as shown by the broad absorption bands in near‐IR spectra. These photosensitive NDIs also showed crystal bending upon photoirradiation, which may be associated with a change in the intermolecular distance of the NDI stacks by the formation of monomeric radical anions, mixed‐valence stacks, and radical‐anion stacks.     

生物电极的原位FTIR反射光谱研究

利用原位FTIR反射光谱对介体型酶电极、酶免疫电极进行了研究 .通过不同电极电位下的电位差谱和同一电位不同状态下的单光束光谱之差 ,确定并解析了葡萄糖氧化酶 (GOD)和葡萄糖的特征谱峰 ,同时 ,还初步研究了酶免疫电极的红外吸收特征     

Nanoscale chemical structure variations in nano-patterned and nano-porous low-k dielectrics: A comparative photothermal induced resonance and infrared spectroscopy investigation

The recent development of the photothermal induced resonance (PTIR) technique has enabled atomic force microscope based infrared (AFM-IR) spectroscopy and imaging to be achieved at the nanometer scale. However, a direct correspondance between PTIR/AFM-IR and more traditional Fourier transform IR (FTIR) spectroscopy has been prohibited for nanometer scale features due to Rayleigh diffraction constraints that limit the latter to few micron spatial resolution. In this regard, we have overcome this challenge by fabricating 1 cm² arrays of 90 nm wide fins in a nano-porous low dielectric constant (i.e. low-k) amorphous hybrid inorganic-organic silicate material using standard nano-electronic fabrication techniques. With these structures, we demonstrate both a general correspondance between AFM-IR, FTIR, and Germanium attenuated total reflection (GATR) IR spectroscopy, as well as differences in the sensitivities that these techniques exhibit to the nanoscale variations in chemical structure induced in the low-k dielectric by the nanopatterning method. To further illustrate the sensitivity of AFM-IR to changes in chemical structure with nanometer resolution, the nanopatterned low-k dielectric was exposed to additional oxidizing plasma ash cleans post patterning. Focusing on the Si-CH₃ deformation band at ∼1275 cm⁻¹, both the AFM-IR, FTIR and GATR measurements show a clear reduction in the concentration of terminal methyl groups in the low-k dielectric as the oxidation potential of the plasma ash clean increased. These results further establish the power of AFM-IR to perform nanoscale IR spectroscopy and demonstrates a stronger correspondance between AFM-IR and well-known micron scale IR techniques such as FTIR and GATR.     

Theoretical study of the electronic excited states of tetracyanoethylene and its radical anion.

The low-lying electronic states of tetracyanoethylene (TCNE) and its radical anion were studied using multiconfigurational second-order perturbation theory (CASPT2) and extended atomic natural orbital (ANO) basis sets. The results obtained yield a full interpretation of the electronic absorption spectra, explain the spectral changes undergone upon reduction, give support to the occurrence of a bound excited state for the anionic species, and provide valuable information for the rationalization of the experimental data obtained with electron transmission spectroscopy.     

Formation and destruction of hydrogen bonds in gels and in aqueous solutions of N-isopropylacrylamide and sodium acrylate observed by ATR-FTIR spectroscopy

In this paper, the formation and destruction of hydrogen bonds in gels and in aqueous solutions of N-isopropylacrylamide (NIPA) and sodium acrylate (SA) were studied using Fourier transform infrared (FTIR) spectroscopy with attenuated total reflection (ATR). Aqueous solutions of NIPA and SA monomers with different pHs were prepared, and the ATR-FTIR spectra were obtained immediately after preparing the solution and after having been stored at room temperature for 6 months. It was found that the IR spectra evidently changed after 6 months due to polymerization, and the viscosity of a solution in the lowest pH system increased with time and finally the solution became a gel. The detailed analysis of the IR spectra indicated that the network of the gel was formed by the formation of hydrogen bonds (without crosslinker). Moreover, this physical gel exhibited the re-swelling transition by increasing the pH of solvent. The transition was caused by the destruction of hydrogen bonds due to the dissociation of carboxyl groups, which was also confirmed by the IR spectroscopy.     

Polymerization of diethynyldiphenylmethane: DSC,FTIR, NMR,and dielectric characterization

4,4′-Diethynyldiphenylmethane thermally polymerizes by a free radical mechanism to a highly crosslinked structure of interest as a high temperature composite matrix resin. The polymerization reaction was characterized by differential scanning calorimetry, Fourier-transform infrared (FTIR) spectroscopy, ¹H and ¹³C nuclear magnetic resonance (NMR) spectroscopy, and microdi-electrometry. The predominant reaction mechanism appears to be linear polymerization through the acetylene end groups, which follows first-order kinetics. However, during the early stages of reaction a second, more rapid polymerization mechanism is evident; it is postulated that this is the formation of a cyclic trimer, which is kinetically favored but sterically prohibited as the crosslinked network grows. Formation of a liquid crystalline trimer is hyppthesized; such intermediate formation is supported by intensity increases in the aromatic region of the NMR spectra, by FTIR difference spectroscopy comparisons with model compounds, and by enhancement of conductivity as observed by microdielectrometry.     

Hydrated hydride anion clusters

On the basis of density functional theory (DFT) and high level ab initio theory, we report the structures, binding energies, thermodynamic quantities, IR spectra, and electronic properties of the hydride anion hydrated by up to six water molecules. Ground state DFT molecular dynamics simulations (based on the Born-Oppenheimer potential surface) show that as the temperature increases, the surface-bound hydride anion changes to the internally bound structure. Car-Parrinello molecular dynamics simulations are also carried out for the spectral analysis of the monohydrated hydride. Excited-state ab initio molecular dynamics simulations show that the photoinduced charge-transfer-to-solvent phenomena are accompanied by the formation of the excess electron-water clusters and the detachment of the H radical from the clusters. The dynamics of the detachment process of a hydrogen radical upon the excitation is discussed.     

用于碱性膜燃料电池的新型聚苯醚阴离子交换膜的制备与性能

以2,6-二甲基聚苯醚(PPO)为原料, 经溴代及N-甲基咪唑季铵化反应, 制备了N-甲基咪唑季铵化PPO, 并进行了红外光谱(FTIR)和氢核磁共振波谱(¹H NMR)表征.所得季铵化产物与聚乙烯醇(PVA)按不同比例共混后用戊二醛交联成膜, 在碱性液中浸泡转化为OH^-型, 得到一系列阴离子交换膜.通过扫描电子显微镜(SEM) 、交流阻抗(AC)、拉伸实验和热重分析(TGA)等手段考察了膜的微观形貌及电导率、力学性能、热稳定性及耐碱性等性能.结果表明, 膜的外观形貌平整均一; 含水率为50.4%~151.2%; 溶胀度为79.2%~164.2%; 离子交换容量为0.47~1.52 mmol/g; 90℃时, M4膜的电导率高达49.1 mS/cm; 断裂伸长率达到128%, 极大改善了PPO膜应力易裂的状况.同时, N-甲基咪唑鎓基团分解温度达到170℃, 高于常用的阴离子交换膜中的季铵基团(120℃).在2 mol/L的NaOH溶液中浸泡192 h后, 电导率仅下降19%, 具备良好的耐碱性能力.     

Analysis of the substituent effect on the reactivity modulation during self-protonation processes in 2-nitrophenols

A voltammetric and spectroelectrochemical ESR study of the reduction processes of five substituted 4-R-2-nitrophenols (R = -H, -OCH(3), -CH(3), -CN, -CF(3)) in acetonitrile was performed. In the potential range considered here (-0.2 to -2.5 V vs Fc+/Fc), two reduction signals (Ic and IIc) were detected; the first one was associated with the formation of the corresponding hydroxylamine via a self-protonation pathway. The voltammetric analysis at the first reduction signal showed that there are differences in the reduction pathway for each substituted 4-R-2-nitrophenol, being the E1/2 values determined by the inductive effect of the substituent in the meta position with respect to the nitro group, while the electron-transfer kinetics was determined by the protonation rate (k(1)+ ) of the anion radical electrogenerated. However, at potential values near the first reduction peak, no ESR signal was recorded from stable radical species, indicating the instability of the radical species in solution. Nevertheless, an intense ESR spectrum generated at the second reduction peak was detected for all compounds, indicating the monoelectronic reduction of the corresponding deprotonated 4-R-2-nitrophenols. The spin-coupling hyperfine structures revealed differences in the chemical nature of the electrogenerated radical; meanwhile, the -CF(3) and -CN substituents induced the formation of a dianion radical structure, and the -H, -CH(3), and -OCH(3) substituents provoked the formation of an anion radical structure due to protonation by acetonitrile molecules of the initially electrogenerated dianion radical. This behavior was confirmed by analyzing the ESR spectra in deuterated acetonitrile and by performing quantum chemical calculations of the spin densities at each site of the electrogenerated anionic radicals.     

1,2,5]Thiadiazolo[3,4-c][1,2,5]thiadiazolidyl: a long-lived radical anion and its stable salts

[1,2,5]Thiadiazolo[3,4-c][1,2,5]thiadiazole (1) is synthesized in 62% yield by fluoride ion-induced condensation of 3,4-difluoro-1,2,5-thiadiazole with (Me(3)SiN=)(2)S. The reversible electrochemical reduction of 1 leads to the long-lived [1,2,5]thiadiazolo[3,4-c][1,2,5]thiadiazolidyl radical anion (2) and further to the dianion (3). The radical anion 2 is also obtained by the chemical reduction of the precursor 1 with t-BuOK in MeCN. The radical anion 2 is characterized by ESR spectroscopy in solution and in the crystalline state. The stable salts [K(18-crown-6)][2] and [K(18-crown-6)][2].MeCN (8 and 9, respectively) are isolated from the spontaneous decomposition of the [K(18-crown-6)][PhXNSN] (6, X = S; 7, X = Se) salts in MeCN solution followed by XRD characterization. The radical anion 2 acts as a bridging ligand in 8 and as chelating ligand in 9. The structural changes observed by XRD in going from 1 to 2 are explained by means of DFT/(U)B3LYP/6-311+G calculations.     

Generation and characterization of the selenocysteinyl radical: direct evidence from time-resolved UV/Vis, electron paramagnetic resonance, and Fourier transform infrared spectroscopy

The selenocysteinyl radical 1 has been generated for the first time by laser flash photolysis (lambda(exc) = 266 nm) of dimethyl bis(N-tert-butoxycarbonyl)-l-selenocystine 2 and of [(9-fluorenylideneamino)oxycarbonyl]methyl(N-tert-butoxycarbonyl)-l-selenocysteine 3 in acetonitrile and characterized by time-resolved (TR) UV/Vis, Fourier transform infrared (FTIR), and electron paramagnetic spectroscopy in combination with theoretical methods. A detailed product study was conducted using gas chromatography and one- and two-dimensional NMR spectroscopy. In the case of [(9-fluorenylideneamino)oxycarbonyl]methyl(N-tert-butoxycarbonyl)-l-selenocysteine 3, the (9-fluorenylideneamino)oxycarbonyl moiety serves as a photolabile protection group providing a "caged selenocysteinyl radical" suitable for biophysical applications. Cleavage of the diselenide bridge or the selenium-carbonyl bond by irradiation is possible in high quantum yields. Because of the lack of a good IR chromophore in the mid-IR region, the selenocysteinyl radical 1 cannot be monitored directly by TR FTIR spectroscopy. TR UV/Vis spectroscopy revealed the formation of the selenocysteinyl radical 1 from both precursors. The selenocysteinyl radical 1 has a lifetime tau approximately 63 mus and exhibits a strong band located at lambda(max) = 335 nm. Calculated UV absorptions of the selenocysteinyl radical (UB3LYP/6-311G(d,p)) are in good agreement with the experimental results. The use of TR UV/Vis spectroscopy permitted the determination of the decay rates of the selenocysteinyl radical in the presence of two quenchers. The product studies demonstrated the reversible photoreaction of dimethyl bis(N-tert-butoxycarbonyl)-l-selenocystine 2. Products of the photolysis of the "caged selenocysteinyl radical" precursor 3 are dimethyl bis(N-tert-butoxycarbonyl)-l-selenocystine 2, carbon dioxide, and some further smaller fragments. In addition, the photodecomposition of the (9-fluorenylideneamino)oxycarbonyl moiety produced 9-fluorenone-oxime 4, 9-fluoren-imine 5, and 6 and 7 as products of the dimerization of two 9-fluorenoneiminoxy radicals 8.