PO2X…PX3/PH2X(X=F,Cl, Br,CH3, NH2)复合物中π-hole磷键作用的电子密度拓扑分析

磷键作为一种新型的分子键合力,因在晶体工程和超分子合成等方面的重要作用而越来越多地引起科研工作者的广泛关注。本文采用量子化学从头算和电子密度拓扑分析等方法,在MP2/aug-cc-pVTZ理论水平上,对PO₂X…PX₃和PO₂X…PH₂X (X = F, Cl, Br, CH₃, NH₂) π型复合物的结构和磷键性质进行了理论研究。研究表明:π-hole磷键复合物存在A和B两种稳定构型,分别以P…P和P…X磷键作用为主。分子中原子(AIM)、非共价作用(NCI)、电子定域函数(ELF)及适应性自然密度划分(AdNDP)分析表明,不同取代基对该类磷键作用的性质产生很大影响:当取代基为给电子基(CH₃, NH₂)时,磷键具有明显的共价作用特征;当取代基为吸电子基(F, Cl, Br)时,构型和取代基不同的磷键分别表现为非共价、部分共价或共价作用特征。自然键轨道(NBO)分析指出,分子间磷键的Wiberg键级的数值越大,磷键的共价性越强,磷键的作用强度越大。构型B的电荷转移主要是PX₃/PH₂X中X原子上的孤对电子转移到PO₂X中π^*(P=O)反键空轨道。     

Structures and bonding situation of Pb2X2 (X?=?H, F, Cl, Br and I)

Quantum chemical calculations using DFT (BP86) and ab initio methods (MP2, MP4 and CCSD(T)) have been carried out for the title compounds. The nature of the Pb?CPb interactions has been investigated with an energy decomposition analysis. The energy minimum structures of the halogen substituted Pb₂X₂ molecules possess a doubly bridged butterfly geometry A like the parent system Pb₂H₂. The unusual geometry can be explained with the interactions between PbX fragments in the X ²?? ground state which leads to one Pb?CPb electron-sharing ?? bond and two donor?Cacceptor bonds between the Pb?CX bonds as donor and vacant p(??) AOs of Pb. The energy difference between the equilibrium form A and the linear structure XPb??PbX (E) which is a second-order saddle point is much higher when X is a halogen atom than for X?=?H. This is because the a ⁴??^?????X ²?? excitation energies of PbX (X?=?F?CI) are higher than for PbH. The structural isomers B, D1, D2, E, F1, F2 and G of Pb₂X₂ are no minima on the potential energy surface.     

Organophosphines in PtPCOX (X = N,Cl, S), PtPCNX (X = Cl,S, Br,I, As) and PtPCClX (X = S,I, As) derivatives: structural aspects

In this review are classified and analyzed structural parameters of almost 90 monomeric organoplatinum complexes with inner coordination spheres consisting of PtPCOX (X?=?N, Cl, S), PtPCNX (X?=?Cl, S, Br, I, As) and PtPCClX (X?=?S, I, As). These complexes crystallized in three crystal systems: orthorhombic (× 11), triclinic (× 32) and monoclinic (× 45). Distorted square planar arrangements about the Pt(II) atoms are provided by mono-, heterobi- and heterotridentate donor ligands. The chelating ligands create a wide variety of four-, five- and six-membered metallocyclic rings and the effects of both steric and electronic factors influence the L–Pt–L bite angles. There are wide variations in the trans-positions of the donor ligands. Two examples are classified as distortion isomers.     

Valence bond description for structures of O_3, SO2 and NO_2~-

A modern valence bond approach, namely bonded tableau unitary group approach, isapplied to ozone, sulphur dioxide and nitrite systems, respectively. It is shown that the biradicalstructure is in the primary position in descrbing the molecular structure of ozone. Thus threeinstead of two resonance structures are needed to describe the ground state of ozone. The caseof sulphur dioxide is similar to that of ozone. It is found that, however, for the nitrite anion fourresonance structures are needed.     

Small heterocyclics as hydrogen bond acceptors and donors: the case of the C2H3XS···NH3 complexes (X = H, F and CH3)

B3LYP/6-311++G(d,p) calculations were employed in order to examine the molecular parameters of the C₂H₃XS···NH₃ heterocyclic hydrogen-bonded complexes with X = H, F and CH₃. Intermolecular criteria were taken into account when studying the formation of these hydrogen-bonded complexes, such as geometry analysis, charge density quantification and interpretation of the harmonic vibrational spectrum, in which case the appearance of red-shift and blue-shift effects was discussed. It was assumed from the outset that many hydrogen bond types may exist in these systems, and these were investigated using the results of topological integrations from the quantum theory of atoms in molecules (QTAIM) and intermolecular charge transfer calculations using the ChelpG scheme. The proton donor/acceptor behavior of C₂H₃XS was interpreted in terms of hydrogen bond energies, whose values were corrected using the basis sets superposition error (BSSE) and zero point energy (ZPE). Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Comparison of σ-hole and π-hole tetrel bonds in complexes of borazine with TH3F and F2TO/H2TO (T = C,Si, Ge)

The complexes between borazine and TH₃F/F₂TO/H₂TO (T = C, Si, Ge) are investigated with high-level quantum chemical calculations. Borazine has three sites of negative electrostatic potential: the N atom, the ring center, and the H atom of the B H bond, whereas TH₃F and F₂TO/H₂TO provide the σ-hole and π-hole, respectively, for the tetrel bond. The N atom of borazine is the favored site for both the σ and π-hole tetrel bonds. Less-stable dimers include a σ-tetrel bond to the borazine ring center and to the BH proton. The π-hole tetrel-bonded complexes are more strongly bound than are their σ-hole counterparts. Due to the coexistence of both T···N tetrel and B···O triel bonding, the complexes of borazine with F₂TO/H₂TO (T = Si and Ge) are very stable, with interaction energies up to −108 kcal/mol. The strongly bonded complexes are accompanied by substantial net charge transfer from F₂TO/H₂TO to borazine.     

Can halogen bond energy be reliably estimated from electron density properties at bond critical point? The case of the (A)nZ—Y•••X− (X,Y = F,Cl, Br) interactions

Relationships between the Y•••X bond critical point (BCP) properties or the Y•••X distance and the halogen bond interaction energy were analyzed in detail by theoretical methods for the series of structures [(A)_nZ—Y•••X]⁻ (X,Y = F, Cl, Br; totally 441 structures). No relationship was found for the whole set of structures or for the series [(A)_nZ—F•••X]⁻, [(A)_nZ—Cl•••X]⁻, and [(A)_nZ—Br•••X]⁻. The interaction energies may be roughly estimated from the BCP properties for the series [(A)_nZ—Y•••F]⁻, [(A)_nZ—Y•••Cl]⁻, and [(A)_nZ—Y•••Br]⁻ as well as for [(A)_nZ—Y•••X]⁻ (when (A)_nZ is variable, X and Y are constant) with the mean absolute deviation values 2.04-4.38 kcal/mol. The corresponding recommended relationships are provided and they are significantly different from the popular dependencies deduced previously for other types of noncovalent interactions. Tremendous effect of the computational method and basis set on the relationships under analysis was discovered. Computational results clearly indicate that, for practical purposes, the E_int(BCP property) dependencies should be established not simply for each global type of interactions (hydrogen bond, halogen bond, chalcogen bond, etc.) but for each combination of the first and second order atoms taking into account also the computational method and basis set.     

Structures,electronic and magnetic properties of the FemOn@Cx (m = 1–3, n = 1–4, x = 50, 60) clusters

The structures, electronic and magnetic properties of the Fe_mO_n@C_x (m?=?1–3, n?=?1–4, x?=?50, 60) clusters have been investigated by using PBE functional. The C₅₀, C₆₀ can significantly increase the structural stabilities of the Fe_mO_n molecules. Fe₂O₃@C₅₀ and Fe₃O₄@C₅₀ are more chemically stable than the Fe₂O₃@C₆₀ and Fe₃O₄@C₆₀ while FeO@C₆₀ is more chemically stable than the FeO@C₅₀. The spin densities of the Fe_mO_n fragments degenerate to zero. Carbon encapsulation leads to the internal charges of the Fe_mO_n fragments transfer from 4 s to 4p orbital.

     

Structural,electronic, and optical properties of Cd-halide-based inorganic LiCdX3 (X = F,Cl) perovskites for photovoltaic applications: A density functional theory study

Halide base perovskite LiCdX₃ (X = F, Cl) is tested by CASTEP (Cambridge Serial Total Energy Package) based on density function theory (DFT). The presented discussion is to explore the structural, electronic, and optical properties of LiCdX₃ (X = F, Cl). The calculated values of the lattice parameter are found to be 3.8 Å and 5.27 Å of LiCdF₃ and LiCdCl₃ respectively. The ideal structure of LiCdX₃ (X = F, Cl) is cubic and dynamically stable. Electronic properties show that materials are semiconductors. The results from band structure are further evaluated by the total and partial density of states. The partial and total density of states confirms the degree of localization of electrons. In optical properties, the highest absorption coefficient is observed in LiCdCl₃. The material is half metallic and has a narrow indirect band gap which may be used in photovoltaic applications.     

Molecular assembly of dithiaparacyclophanes mediated by non-covalent X…X,X…Y and C–H…X (X,Y=Br,S, N) interactions

Regioselectivity for the 5,8,15,18-substituted isomer over the 5,8,14,17-isomer was observed in a series of mercaptan–bromide coupling reactions leading to the formation of 2,11-dithia[3.3]paracyclophanes. Their molecular assembly was established by X-ray crystallographic studies. In the crystal packing of these paracyclophanes, several types of non-covalent interactions including halogen–halogen interaction, halogen-bonding interaction, weak hydrogen-bonding interaction, etc. are observed in crystals 3a, 3b and 3c. There is evidence to indicate that weak non-covalent Br…Br, Br…S, Br…N, C–H…S, S…S and C–H…N interactions play an important role in governing their molecular assembly assumed in the solid state. The attractive interactions of Br…Br, Br…S and Br…N are also rationalised and supported in terms of the density functional theory calculations.

     

Syntheses and characterization of Pb(trz) n X2 (X = CH3COO−, NCS−, and n = 1, 2) complexes,and crystal structure of [Pb(trz)2(MeOH)](ClO4)2·H2O

Lead(II) complexes with 2,4,6-tris(2-pyridyl)-1,3,5-triazine (trz) have been synthesized using a direct synthetic method and characterized by IR and ²⁰⁷Pb NMR spectroscopy and CHN elemental analysis. The structure of [Pb(trz)₂(MeOH)](ClO₄)₂·H₂O was confirmed by X-ray crystallography. Single-crystal X-ray data for [Pb(trz)₂(MeOH)](ClO₄)₂·H₂O show the complex to be monomeric with the Pb having an unsymmetrical seven-coordinate geometry, coordinated by six nitrogen atoms of the trz ligands and one oxygen atom of MeOH. The arrangement of the ligands in the [Pb(trz)₂(MeOH)](ClO₄)₂·H₂O complex exhibits a coordination gap around the Pb(II), occupied possibly by a stereoactive lone pair of electrons on lead(II); the coordination around the lead atoms is hemidirected.     

Complexes H2CO:PXH2 and HCO2H : PXH2 for X=NC,F, Cl,CN, OH,CCH, CH3, and H: Pnicogen Bonds and Hydrogen Bonds

Ab initio MP2/aug’-cc-pVTZ calculations have been carried out to investigate H₂CO : PXH₂ pnicogen-bonded complexes and HCO₂H : PXH₂ complexes that are stabilized by pnicogen bonds and hydrogen bonds, with X=NC, F, Cl, CN, OH, CCH, CH₃, and H. The binding energies of these complexes exhibit a second-order dependence on the O−P distance. DFT-SAPT binding energies correlate linearly with MP2 binding energies. The HCO₂H : PXH₂ complexes are stabilized by both a pnicogen bond and a hydrogen bond, resulting in greater binding energies for the HCO₂H : PXH₂ complexes compared to H₂CO : PXH₂. Neither the O−P distance across the pnicogen bond nor the O−P distance across the hydrogen bond correlates with the binding energies of these complexes. The nonlinearity of the hydrogen bonds suggests that they are relatively weak bonds, except for complexes in which the substituent X is either CH₃ or H. The pnicogen bond is the more important stabilizing interaction in the HCO₂H : PXH₂ complexes except when the substituent X is a more electropositive group. EOM-CCSD spin-spin coupling constants ^1pJ(O−P) across pnicogen bonds in H₂CO:PXH₂ and HCO₂H : PXH₂ complexes increase as the O−P distance decreases, and exhibit a second order dependence on that distance. There is no correlation between ^2hJ(O−P) and the O−P distance across the hydrogen bond in the HCO₂H : PXH₂ complexes. ^2hJ(O−P) coupling constants for complexes with X=CH₃ and H have much greater absolute values than anticipated from their O−P distances.     

The Lewis basicity of nitrido complexes. Theoretical investigation of the structure and bonding of Cl2 (PH3)3ReN–X (X = BH3, BCl3, BBr3, AlH3, AlCl3, AlBr3, GaH3, GaCl3, GaBr3, O, S, Se, Te)

Quantum chemical calculations using gradient-corrected density functional theory (B3LYP) and ab initio methods at the MP2 level are reported for the geometries and bond energies of the nitrido complexes Cl₂ (PH₃)₃ReN–X (X = BH₃, BCl₃, BBr₃, AlH₃, AlCl₃, AlBr₃, GaH₃, GaCl₃, GaBr₃, O, S, Se, Te). The theoretical geometries are in excellent agreement with experimental values of related complexes which have larger phosphine ligands. The parent nitrido complex Cl₂(PH₃)₃ReN is a very strong Lewis base. The calculated bond dissociation energy of Cl₂(PH₃)₃ReN–AlCl₃ is D _e = 43.7 kcal/mol, which is nearly as high as the bond energy of Me₃N–AlCl₃. The donor-acceptor bonds of the other Cl₂(PH₃)₃ReN–AY₃ complexes are also very strong. Even stronger N–X bonds are predicted for most of the nitrido-chalcogen complexes, which exhibit the trend X = O ≫ S > Se > Te. Analysis of the electronic structure shows that the parent compound Cl₂(PH₃)₃ReN has a Re–N triple bond. The Re–N σ bond is clearly polarized towards nitrogen, while the two π bonds are nearly nonpolar. The Re–N σ and π bonds become more polarized toward nitrogen when a Lewis acid or a chalcogen atom is attached. Bonding in AY₃ complexes should be described as Cl₂(PH₃)₃ReE≡N→AY₃, while the chalcogen complexes should be written with double bonds Cl₂(PH₃)₃Re=N=X. The charge-decomposition analysis indicates that the nitrogen-chalcogen bonds of the heavier chalcogen complexes with X = S, Se, Te can also be interpreted as donor-acceptor bonds between the nitrido complex acting as a Lewis base and the chalcogen atom with an empty p(σ) orbital acting as a Lewis acid. The nitrido oxo complex Cl₂(PH₃)₃ Re=N=O has a covalent N–O double bond. Received: 27 July 1998 / Accepted: 26 October 1998 / Published online: 16 March 1999     

N-H…X (X = F, Cl, Br, and I) hydrogen bonding in aromatic amide derivatives in crystal structures

Intramolecular N H···X (X=F, Cl, Br, and Ⅰ) hydrogen bonding patterns of aromatic amides in the solid state are summarized. It is revealed that the key for the formation of this kind of weak intramolecular hydrogen bonding in X-ray crystal structures is to suppress the competition of strong intermolecular N H···O C hydrogen bonding of the amide unit. For amides with identical backbones, the bonding capacity of halogen atoms as hydrogen bonding acceptors is in the order of F>Cl>Br>I, which is in accordance with their electronegativity strength. Generally, the five-membered hydrogen bonding is easier to form than the six-membered one.     

The Cl−NH3, Cl−H2O,F−NH3 and F−H2O clusters and their photoelectron spectra

The geometries of the Cl^–NH₃, Cl^–H₂O, F^–NH₃ and F^–H₂O clusters are optimized using the coupled cluster method. The four lowest ionization potentials are then calculated, leading to the ground and low excited states of the neutral species. The first three IPs describe ionization from the externalp state of the halogen atom, whereas the fourth corresponds to ionization from the NH₃ or H₂O moiety, leading to charge transfer complexes. These complexes were recently observed in the photoelectron spectrum of Cl^–NH₃, in full accord with our calculations.Supported in part by the U.S.-Israel Binational Science Foundation     

Syntheses,structures, and properties of transition metal complexes with 2-( n -pyridyl)benzimidazole ( n = 2, 3, and 4)

Three pyridylbenzimidazoles (2-PBIM, 3-PBIM, and 4-PBIM) have been prepared (2-PBIM: 2-(2-pyridyl)-benzimidazole, 3-PBIM: 2-(3-pyridyl)-benzimidazole, 4-PBIM: 2-(4-pyridyl)-benzimidazole). Reactions of several transition metals (Cd²⁺, Cu²⁺, Fe²⁺) with the three ligands gave four new coordination complexes, [(Cd)₂(2-PBIM)₂(CH₃COO)₄] (1), [Cu(3-PBIM)₂(CH₃COO)₂]?·?2H₂O (2), [Cu(4-PBIM)₂(CH₃COO)₂(H₂O)]?·?H₂O (3), and [Fe(4-PBIM)₂(Cl)₂(H₂O)₂] (4), respectively. These four complexes have been characterized by X-ray crystallography, IR spectroscopy, and UV absorption spectroscopy. Thermogravimetric properties of 2 and 4 were also measured. X-ray crystallographic studies reveal that these four complexes are very different, although the ligands are similar in structure. The role of hydrogen-bonding and π–π interactions in extending dimensionality of simple complexes has been discussed.     

Synthesis and structure of [Hg2(L)2(NO3)2] (L = (4-nitrophenyl)pyridin-2-ylmethyleneamine); a theoretical study on Hg–Hg bond in this and in linear Hg2X2 (X = F, Cl, Br, I, Ph) complexes

A new binuclear mercury(I) complex, [Hg₂(L)₂(NO₃)₂] (L = (4-nitrophenyl)pyridin-2-ylmethyleneamine), 1, has been synthesized and characterized by CHN analyses, IR, UV–vis spectroscopy and X-ray crystal structure analysis. The complex contains a metal–metal bonded core, [Hg–Hg]²⁺, in which a single bidentate imine ligand is coordinated to each mercury atom. The Hg atoms have an additional interaction with the oxygen atom of the NO₃ ^? ion. Theoretical studies show that the interaction energy between the two {Hg(L)NO₃} fragments is about 45–59 kcal/mol depending on the level of calculation. The Mayer-Mulliken and Wiberg bond indices (WBI) for Hg–Hg bond at different levels of theory are about 0.75–0.88 and 0.60–0.70, respectively, and are significantly larger than that for Hg–N and Hg–O bonds. The NBO calculations by using different methods and basis sets also show that the S character in Hg–Hg bond is very large (94.65–97.81 %). All above data for this complex are compared with those for linear Hg₂X₂ (X = F,Cl, Br, I, Ph) complexes. Interestingly, the bond order for Hg–Hg bond in complex 1 is comparable with that for Hg₂F₂ and larger than those in above linear complexes. This is consistent with the experimental data indicating that the Hg–Hg bond in 1 is shorter than that in all above complexes, except Hg₂F₂.     

Theoretical study on the M-H···π interactions between metal hydrides and inorganic benzene B3X3H3(X = O,S, Se)

In this work, we conducted ab initio calculations to evaluate the properties of M-H···π interactions between the metal hydrides MH (M?=?Li, Na, MgH, CaH, NiH, CuH, ZnH) and inorganic benzenes B₃X₃H₃ (X?=?O, S, Se). Unlike benzene, inorganic benzene B₃X₃H₃ (X?=?O, S, Se) supports a large area of positive molecular electrostatic potential above and below the molecule, which acts as a Lewis acid and interacts with the H atom of metal hydride. MP2/6–311++G(d, p) results show that these intermolecular interactions exhibit the characteristics of close shell noncovalent interactions. The electrostatic interaction significantly contributes to stabilizing the complexes. The M-H···π interaction’s strength is associated with the property of group VI atom and metal hydride. X’s atomic number decreasing and the H of MH becoming more negative facilitate stronger interaction. Furthermore, the addition of substituent on the B₃O₃Y₃ (Y?=?F, Cl, CN, OH, and CH₃) significantly impacts the π-hole of inorganic benzene and thus modulates these M-H···π interactions. More elongation and blueshift of the MH bonds upon complexation were found for electron-withdrawing substituents. Analysis of σ and π orbital separation indicates that the π-attractor’s position relative to the B atom in the inorganic benzene changes with different substituents. The M-H···π interaction’s strength is primarily dependent on the π-electron density, not σ-electron density.

     

Geometric shielding corrections for calculation of electron scattering by CO2, C2H2, CHCl3, CH2Cl2, CH3Cl,CHF3, CH2F2 and CH3F at 30–5000 eV

Taking into account the changes of the geometric shielding effect in a molecule as the incident electron energy varies, an empirical fraction, which depends on the energy of the incident electrons, the target's molecular dimension and the atomic and electronic numbers in the molecule, is presented. Using this empirical fraction, a new formulation of the additivity rule is proposed. Using the new additivity rule, the total cross sections of electron scattering by CO₂, C₂H₂, CHCl₃, CH₂Cl₂, CH₃Cl, CHF₃, CH₂F₂ and CH₃F are calculated at the Hartree–Fork level at 30–5000 eV. The quantitative total cross sections are compared with those obtained by experiments and other theories, and good agreement is obtained over a wide energy range, especially above 100 eV.     

CX3NO2(X=F,Cl)分子结构的稳定性

分子CF_3NO_2(1)、CF_2CINO_2(2)、CFCl_2NO_2(3)和CCl_3NO_2(4)在光化学和大气化学中是一类重要的分子。虽然它们的许多性质被广泛研究,但是从理论上尤其是ab initio分子轨道法对它们分子结构和化学键的研究报导极少。本文在ab initio/STO-3G水平上,全构型优化,系统地研究了这类分子的结构和各种构型的稳定性,并与实验以及CX_3NO(X=F,Cl)的结构进行了比较。计算采用Gaussian-82程序。在VAX-8350计算机上完成。结果和讨论分子各种稳定构型的键长、键角、Hartree-Fock能量、电荷密度及偶极矩列于表1至表3。