Tautomerism of bis(2,4-benzyloxy)-6-(5H)-one-1,3,5-triazine: A combined crystallographic and quantum-chemical investigation

In order to study the keto and enol forms of cyanuric acid derivatives in the solid state, we have synthesized bis(2,4-benzyloxy)-6-(5H)-one-1,3,5-triazine, 1. Computational investigations indicate that keto form is more stable than enol form in both gas phase and solution phase by 9.69–11.18 kcal mol⁻¹ IR and crystallographic analysis shows that 1 exists in keto form in the solid state also. To obtain the enol form in the solid state, we adopted co-crystallization with an organic base. The crystal structures of both keto/amine and the enol/imine forms (in a co-crystal) are reported. IICT Communication No. 2505/CMM-0022.     

Co-crystal Prediction by Artificial Neural Networks**

A significant amount of attention has been given to the design and synthesis of co-crystals by both industry and academia because of its potential to change a molecule's physicochemical properties. Yet, difficulties arise when searching for adequate combinations of molecules (or coformers) to form co-crystals, hampering the efficient exploration of the target's solid-state landscape. This paper reports on the application of a data-driven co-crystal prediction method based on two types of artificial neural network models and co-crystal data present in the Cambridge Structural Database. The models accept pairs of coformers and predict whether a co-crystal is likely to form. By combining the output of multiple models of both types, our approach shows to have excellent performance on the proposed co-crystal training and validation sets, and has an estimated accuracy of 80 % for molecules for which previous co-crystallization data is unavailable.     

A Theoretical Study on the Photochromic Mechanism of 1-Phenyl-3-methyl-4-（6-hydro-4-amino-5-sulfo-2,3-pyrazine）-pyrazole-5-one

The photochromic mechanism of 1-phenyl-3-methyl-4-（6-hydro-4-amino-5-sulfo-2,3- pyrazine）-pyrazole-5-one has been investigated using the density functional theory（DFT）. The solvent effect is simulated using the polarizable continuum model（PCM） of the self-consistent reaction field theory. According to the crystal structure of the title compound, an intramolecular proton transfer mechanism from enol to keto form was proposed to interpret its photochromism. Bader＇s atom-in-molecule（AIM） theory is used to investigate the nature of hydrogen bonds and ring structures. Time-dependent density functional theory（TDDFT） calculation results show that the photochromic process from enol to keto form is reasonable. The conformation and molecular orbital analysis of enol and keto forms explain why only intramolecular proton transfer is possible. The results from analyzing the energy and dipole moments of enol form, transition state and keto form in the gas phase and in different solvents have been used to assess the stability of the title compound.     

Co-crystal structure of mixed molecules of methyl 2-(3-chloro-4-methyl-2-oxo-2H-chromen-7-yloxy)acetate and 2-(2-aminophenyl)benzothiazole

A co-crystal is obtained in a methanolic solution from methyl 2-(3-chloro-4-methyl-2-oxo-2H-chromen-7-yloxy)acetate and 2-(2-aminophenyl)benzothiazole. In the crystal these molecules are connected via usual N-H…O and weak C-H…O H-bonds. The co-crystals are very stable.     

Crystal Structure of Garciniaphenone and Evidences on the Relationship between Keto–Enol Tautomerism and Configuration

Garciniaphenone (=rel‐(1R,5R,7R)‐3‐benzoyl‐4‐hydroxy‐8,8‐dimethyl‐1,7‐bis(3‐methylbut‐2‐en‐1‐yl)bicyclo[3.3.1]non‐3‐ene‐2,9‐dione; 1 ), a novel natural product, was isolated from a hexane extract of Garcinia brasiliensis fruits. The crystal structure of 1 as well as the selected geometrical and configurational features were compared with those of known related polyprenylated benzophenones. Garciniaphenone is the first representative of polyprenylated benzophenones without a prenyl substituent at C(5). Notably, the absence of a 5‐prenyl substituent has an impact on the molecular geometry. The tautomeric form of 1 in the solid state was readily established by a residual‐electronic‐density map generated by means of a difference Fourier analysis, and there is an entirely delocalized six‐membered chelate ring encompassing the keto–enol moiety. The configuration at C(7) was used to rationalize the nature of the keto–enol tautomeric form within 1 . The intermolecular array in the network is maintained by nonclassical intermolecular H‐bonds.     

The effect of ion source temperature on the fragmentation of 2-pentanone

A dramatic source temperature effect is observed in the low collision energy collision-induced dissociation spectra of molecular ions derived via 70 eV electron bombardment of 2-pentanone and via charge exchange. The observation cannot simply be attibuted to the increased thermal energy of the 2-pentanone molecular ions. A number of factors appear to contribute to the observed results, (i) the increase, with temperature, in the ratio of the concentration of enol to keto neutral molecules, (ii) temperature effects on the Franck-Condon factors which control the yields and internal energies of the keto and enol molecular ions, (iii) differences in the relative stabilities of the keto and enol molecular ions, (iv) temperature effects on the equilibrium between the isomeric molecular ions. This last item is probably most important, with the concentration of being most significant. These data highlight the role that ion source temperature can play as a variable in elucidating ion structure problems.     

Tautomeric equilibria and pi electron delocalization for some monohydroxyarenes--quantum chemical studies

Keto-enol tautomeric interconversions and variations of the pi-electron distribution were studied for 11 isolated monohydroxyarenes at the DFT(B3LYP)/6-311++G(2df,2p) level. For two monohydroxyarenes (phenol and 9-anthrol), the PCM model of solvation (water) was also applied to the DFT geometries. The geometry-based HOMA index was applied to estimate pi-electron delocalization in the keto and enol tautomeric forms. Thermodynamic parameters of tautomeric interconversions (DeltaET, DeltaGT, TDeltaST, pKT) were calculated to estimate relative stabilities of individual tautomers and their percentage contents in the tautomeric mixtures. In almost all cases, the aromatic enol forms are strongly favored. An exception is 9-anthrol, which prefers its keto form. The resonance stabilization of this form comes from the central ring. Generally, aromaticity is the main factor that influences tautomeric equilibria in monohydroxyarenes. Hydration effect is considerably smaller and it does not change the tautomeric preference.     

Bildung und Eigenschaften von Aoylphosphinen. III. Molekül- und KristallStruktur von Dipivaloylphosphin

Syntheses and Properties of Acylphosphines. III. Molecular and Crystal Structure of Dipivaloylphosphine In the reaction of tris(trimethylsilyl)phosphine with pivaloyl chloride two Si? P bonds are cleaved and dipivaloyltrimethylsilylphosphine is formed. Reaction with methanol yields dipivaloylphosphine. N.m.r. investigations show a tautomeric equilibrium between keto and enol form as in β-diketones. The substance crystallizes in the orthorhombic space group Pmmn with molecules in two crystallographically different sites [cell parameters: a = 14.04(1), b = 13.82(1), c = 6.28(2) Å]. An X-ray structure determination (R = 5.0%) proves the existence of the enol form in the solid, in that (1.) the molecular symmetry is mm 2(C_2v), (2.) P? C bonds are shortened and C? O bonds are elongated, and (3.) we find a symmetric hydrogen bridge with a very short O? O distance. Bond lengths and angles are compared with those of other β-diketones. The packing of molecules is studied in detail.     

Mechanisms of electron-transfer oxidation of NADH analogues and chemiluminescence. Detection of the keto and enol radical cations

The radical cation of an NADH analogue (BNAH: 1-benzyl-1,4-dihydronicotinamide) has been successfully detected as the transient absorption and ESR spectra in the thermal electron transfer from BNAH to Fe(bpy)(3)(3+) (bpy = 2,2'-bipyridine) and Ru(bpy)(3)(3+). The ESR spectra of the radical cations of BNAH and the dideuterated compound (BNAH-4,4'-d(2)) indicate that the observed radical cation is the keto form rather than the enol form in the tautomerization. The deprotonation rate and the kinetic isotope effects of the keto form of BNAH(*)(+) were determined from the kinetic analysis of the electron-transfer reactions. In the case of electron transfer from BNAH to Ru(bpy)(3)(3+), the chemiluminescence due to Ru(bpy)(3)(2+) was observed in the second electron-transfer step from BNA(*), produced by the deprotonation of the keto form of BNAH(*)(+), to Ru(bpy)(3)(3+). The observation of chemiluminescence due to Ru(bpy)(3)(2+) provides compelling evidence that the Marcus inverted region is observed even for such an intermolecular electron-transfer reaction. When BNAH is replaced by 4-tert-butylated BNAH (4-t-BuBNAH), no chemiluminescence due to Ru(bpy)(3)(2+) has been observed in the electron transfer from 4-t-BuBNAH to Ru(bpy)(3)(3+). This is ascribed to the facile C-C bond cleavage in 4-t-BuBNAH(*)(+). In the laser flash photolysis of a deaerated MeCN solution of BNAH and CHBr(3), the transient absorption spectrum of the enol form of BNAH(*)(+) was detected instead of the keto form of BNAH(*)(+), and the enol form was tautomerized to the keto form. The rate of intramolecular proton transfer in the enol form to produce the keto form of BNAH(*)(+) was determined from the decay of the absorption band due to the enol form and the rise in the absorption band due to the keto form. The kinetic isotope effects were observed for the intramolecular proton-transfer process in the keto form to produce the enol form.     

Predicting the tautomeric equilibrium of acetylacetone in solution. I. The right answer for the wrong reason?

This study investigates how the various components (method, basis set, and treatment of solvent effects) of a theoretical approach influence the relative energies between keto and enol forms of acetylacetone, which is an important model system to study the solvent effects on chemical equilibria from experiment and theory. The computations show that the most popular density functional theory (DFT) approaches, such as B3LYP overestimate the stability of the enol form with respect to the keto form by ～10 kJ mol^?1, whereas the very promising SCS‐MP2 approach is underestimating it. MP2 calculations indicate that in particular the basis set size is crucial. The Dunning Huzinaga double ζ basis (D95z(d,p)) used in previous studies overestimates the stability of the keto form considerably as does the popular split‐valence plus polarization (SVP) basis. Bulk properties of the solvent included by continuum approaches strongly stabilize the keto form, but they are not sufficient to reproduce the reversal in stabilities measured by low‐temperature nuclear magnetic resonance experiments in freonic solvents. Enthalpic and entropic effects further stabilize the keto form, however, the reversal is only obtained if also molecular effects are taken into account. Such molecular effects seem to influence only the energy difference between the keto and the enol forms. Trends arising due to variation in the dielectric constant of the solvent result from bulk properties of the solvent, i.e., are already nicely described by continuum approaches. As such this study delivers a deep insight into the abilities of various approaches to describe solvent effects on chemical equilibria. © 2009 Wiley Periodicals, Inc. J Comput Chem, 2010     

3-X-2(1H)-吡啶酮互变异构体系的理论计算

２（１Ｈ）－吡啶酮类化合物常呈现出诱人的生物活性［１,２］．由于酮式和烯醇式结构具有互变异构化性质,因此确定其互变异构平衡体系中的优势结构及研究取代基对平衡体系的影响,对阐明该类化合物的生物活性及进行构效关系的研究有着重要的意义．当其３－位含有可与２－位羰基或２－位羟基形成分子内氢键的基团时,势必对互变异构平衡产生影响．基于该类化合物的互变异构平衡有着强烈的溶剂效应［３］,本文对３－Ｘ－２（１Ｈ）－吡啶酮（Ｘ＝ＮＯ２,ＮＨ２,ＣＯＯＨ）及其烯醇式互变异构体分别在气相和溶液中进行了理论计算,考察了…     

The keto→enol photoisomerization of N‐salicilydenemethylfurylamine: Nonadiabatic ab initio dynamics simulation

The photoinduced isomerization of cis‐keto and trans‐keto isomers in N‐salicilydenemethylfurylamine has been studied using the surface‐hopping approach at the CASSCF level of theory. After the cis‐keto or trans‐keto isomer is excited to S₁ state, the molecule initially moves to a excited‐state local minimum. The torsional motion around relative bonds in the chain drives the molecule to approach a keto‐form conical intersection and then nonadiabatic transition occurs. According to our full‐dimensional dynamics simulations, the trans‐keto and enol photoproducts are responsible for the photochromic effect of cis‐keto isomer excited to S₁ state, while no enol isomer was obtained in the photoisomerization of trans keto on excitation. The cis keto to enol and cis keto to trans keto isomerizations are reversible photochemical reactions. It is confirmed that this aromatic Schiff base is a potential molecular switch. Furthermore, the torsion of C N bond occurs in the radiationless decay of trans‐keto isomer, while it is completely suppressed by an intramolecular hydrogen bonding interaction in the dynamics of cis‐keto form. Moreover, the excited‐state lifetime of cis keto is longer than that of trans‐keto form due to the O···H N hydrogen bond.     

Anticancer potential of novel 5-Fluorouracil co-crystals against MCF7 breast and SW480 colon cancer cell lines along with docking studies

In the present investigation, 5-Fluorouracil co-crystals with four cyclic dimers of amino acids (Glycine, Tryptophane, Leucine and Alanine conformers are prepared via co-crystallization route, with an aim to improve its anticancer effectiveness and to minimize its associated drawbacks. The prepared co-crystals were characterized by FTIR and PXRD techniques. FTIR revealed the presence of respective functional groups in the prepared co-crystals. Frequencies (v) of NH (3416 cm^?1) and carbonyl group (1671 cm^?1) in the 5-Fu (FTIR) spectrum were considerably moved in all co-crystal’s spectra exhibiting the development of new interactions. 5-Fu peak at 2θ = 28.48° was visibly transformed in the co-crystal’s graphs of PXRD. MTT assays was studied on MCF7 breast and SW480 colon cancer cell lines using 0.78 to 200 μg mL^?1 dose concentration. Co-crystals with Tryptophane and Leucine cyclic dimers revealed highest potential (99 % and 100 %) respectively, against colon cancer cell line Likewise Alanine and Tryptophane dimers furnished promising efficiency (100 %) against MCF7 cell line Genetic Optimization for Ligand Docking/GOLD was applied to evaluate the latent anti-tumor behaviors against the proteins [C-myc. (PDB ID: 6G6K, Thymidylate synthase (PDB ID:1HVY) and protein kinase (PDB ID: 2X18). Results revealed that the developed 5-Fluorouracil co-crystals have promising antitumor efficacy as compared to already reported 5-Fu co-crystals and 5-Fu alone.     

Theoretical Study on Enol-keto Tautomerism of α-Fluorine-β-diketones

Density Functional Theory method is applied to investigate the enol-keto tautome- rism of both acyclic and cyclic α-fluorine-β-diketones. It is shown that, for acyclic cases, α-fluorine could improve the relative stability of keto tautomer by lessening intramolecular hydrogen bond of enol form, whereas the relative stability of cyclic enol could be attributed to two factors: destabi- lization of keto and stabilization of enol. Furthermore, the relative stabilities of all enol tautomers are improved in THF to different extents.     

Single‐Crystal X‐ray Diffraction Structure of the Stable Enol Tautomer Polymorph of Barbituric Acid at 224 and 95 K

The thermodynamically stable enol crystal form of barbituric acid, previously prepared as powder by grinding or slurry methods, has been obtained as single crystals by slow cooling from methanol solution. The selection of the enol crystal was facilitated by a density‐gradient method. The structure at 224 and 95 K confirms the enol inferred on the basis of powder data. The enol has bond lengths that are consistent with the expected bond order and with DFT calculations that include treatment of hydrogen bonding. In isolation, the enol is higher in energy than the tri‐keto form by 50 kJ mol^?1 which must be more than compensated by enhanced hydrogen bonding. Both crystal forms have four normal H‐bonds; the enol has two additional H‐bonds with O–O distances of 2.49 Å. Conversion into the enol form occurs spontaneously in the solid state upon prolonged storage of the commercial tri‐keto material. Slurry conversion of tri‐one to enol in ethanol is reversed in direction in ethanol‐D₁.     

The 2-oxocyclobutanecarboxylic acid keto-enol system in aqueous solution: a remarkable acid-strengthening effect of the cyclobutane ring

Flash photolysis of 2-diazocyclopentane-1,3-dione in aqueous solution produced 2-oxocyclobutylideneketene, which underwent hydration to the enol of 2-oxocyclobutanecarboxylic acid; the enol then isomerized to the keto form of this acid. Rates of the ketene and enol reactions were measured in acid, base, and buffer solutions across the acidity range [H+] = 10(-1)-10(-13) M, and analysis of these data, together with rates of enolization of the keto form of 2-oxocyclobutanecarboxylic acid determined by bromine scavenging, gave keto-enol equilibrium constants as well as acidity constants of the keto and enol forms. The keto-enol equilibrum constants proved to be 2 orders of magnitude less than those reported previously for the next higher homolog, 2-oxocyclopentanecarboxylic acid, reflecting the difficulty of inserting a carbon-carbon double bond into a small, strained carbocyclic ring. The acidity constant of the enol group of 2-oxocyclobutanecarboxylate ion, on the other hand, is greater, by 4 orders of magnitude, than that of the corresponding enol in the cyclopentyl system. This remarkable increase in acidity with diminishing ring size is consistent with the enhanced s character of the orbitals used to make the exocyclic bonds of the smaller cyclobutane ring.     

Substituent effects on the stability of 1,4‐benzodiazepin‐2‐one tautomers: A density functional study

The relative stability of 1,4‐benzodiazepin‐2‐one tautomers in the gas phase and model solvents was calculated at the M06 and ωB97XD levels of theory. The two density functionals were benchmarked earlier and demonstrated as excellent models to study tautomerism in a vast array of chemical systems. A number of commercially available 1,4‐benzodiazepin‐2‐ones were investigated computationally for the first time. In addition, some biologically active and newly devised benzodiazepines were considered, which may be important in designing structures with desired (bio)chemical features. Special attention was paid to determine substituent effects on the Gibbs free energies of keto, enol, and iminol forms for each respective benzodiazepine. It was demonstrated that (i) the replacement of the benzene ring by the heterocyclic ring in the benzodiazepine system may stabilize the iminol tautomer, and (ii) the electron‐withdrawing substituent at the C3‐position of the respective benzodiazepine may stabilize the enol tautomer relative to the parent keto form. It is concluded that substituent effects may govern the chemical reactivity and biological properties of selected benzodiazepines.     

Cu(OAc)2.H2O与1-苯基-3-甲基-4-苯甲酰基吡唑啉酮-5(HPMBP)的固相配位化学反应

在低加热条件下(<100℃), 研究了Cu(OAc)2.H2O与1-苯基-3-甲基-4-苯甲酰基吡唑啉酮-5-(HPMBP)两种异构体(烯醇式与酮式)的固相配位化学反应, 结果表明两种异构体与Cu(OAc)2.H2O固相化学反应活性并不相同。通过IR, UV测定, 发现酮式异构体在与Cu(OAc)2.H2O的固相反应过程中, 其自身经过了一个由酮式到烯醇式的固相异构化。     

1‐[(5‐tert‐Butyl‐2‐hydroxy­phen­yl)­imino­meth­yl]‐2‐napthol

In the crystal structure of the title compound, C₂₁H₂₁NO₂, strong N—H⋯O and O—H⋯O hydrogen bonds exist. The keto–amine form is favoured over the enol–imine form in the tautomerism. Six‐membered chelate rings formed by intra­molecular hydrogen bonds increase the stability of the whole mol­ecule. Inter­molecular hydrogen bonds link adjacent units together, forming an infinite one‐dimensional chain parallel to the a axis.     

Challenges and Progress in Nonsteroidal Anti-Inflammatory Drugs Co-Crystal Development

Co-crystal innovation is an opportunity in drug development for both scientists and industry. In line with the “green pharmacy” concept for obtaining safer methods and advanced pharmaceutical products, co-crystallization is one of the most promising approaches to find novel patent drugs, including non-steroidal anti-inflammatory drugs (NSAID). This kind of multi-component system improves previously poor physicochemical and mechanical properties through non-covalent interactions. Practically, there are many challenges to find commercially viable co-crystal drugs. The difficulty in selecting co-formers becomes the primary problem, followed by unexpected results, such as decreased solubility and dissolution, spring and parachute effect, microenvironment pH effects, changes in instability, and polymorphisms, which can occur during the co-crystal development. However, over time, NSAID co-crystals have been continuously updated regarding co-formers selection and methods development.