Experimental and Computational Studies on the Formation of Three para‐Benzyne Analogues in the Gas Phase

Experimental and computational studies on the formation of three gaseous, positively‐charged para‐benzyne analogues in a Fourier transform ion cyclotron resonance (FT‐ICR) mass spectrometer are reported. The structures of the cations were examined by isolating them and allowing them to react with various neutral reagents whose reactions with aromatic carbon‐centered σ‐type mono‐ and biradicals are well understood. Cleavage of two iodine–carbon bonds in N‐deuterated 1,4‐diiodoisoquinolinium cation by collision‐activated dissociation (CAD) produced a long‐lived cation that showed nonradical reactivity, which was unexpected for a para‐benzyne. However, the reactivity closely resembles that of an isomeric enediyne, N‐deuterated 2‐ethynylbenzonitrilium cation. A theoretical study on possible rearrangement reactions occurring during CAD revealed that the cation formed upon the first iodine atom loss undergoes ring‐opening before the second iodine atom loss to form an enediyne instead of a para‐benzyne. Similar results were obtained for the 5,8‐didehydroisoquinolinium cation and the 2,5‐didehydropyridinium cation. The findings for the 5,8‐didehydroisoquinolinium cation are in contradiction with an earlier report on this cation. The cation described in the literature was regenerated by using the literature method and demonstrated to be the isomeric 5,7‐didehydro‐isoquinolinium cation and not the expected 5,8‐isomer.     

Effects of a hydroxyl substituent on the reactivity of the 2,4,6-tridehydropyridinium cation, an aromatic σ,σ,σ-triradical

The reactivity of 3-hydroxy-2,4,6-tridehydropyridinium cation was found to be drastically different from the reactivity of 2,4,6-tridehydropyridinium cation. While the latter triradical reacts with tetrahydrofuran, dimethyl disulfide and ally iodide via three consecutive atom or group abstractions, the former triradical exhibits this behavior only with tetrahydrofuran. Only a single atom or group abstraction was observed for the 3-hydroxy-2,4,6-tridehydropyridinium cation upon interaction with dimethyl disulfide and allyl iodide. This change in reactivity is caused by the hydroxyl group that strengthens the interactions between the two radical sites adjacent to it, thus reducing their reactivity. This explanation is supported by the observation of similar behavior for related biradicals.     

Monitoring the Light-induced Isomerisation of the Prototypical Polycyclic Aromatic Hydrocarbons C10H8+ through Ion-Molecule Reactions

Structural rearrangements in ions are essential for understanding the composition and evolution of energetic and chemically active environments. This study explores the interconversion routes for simple polycyclic aromatic hydrocarbons, namely naphthalene and azulene radical cations (C₁₀H₈⁺), by combining mass spectrometry and vacuum ultraviolet tunable synchrotron radiation through the chemical monitoring technique. Products of ion-molecule reactions are used to probe C₁₀H₈⁺ structures that are formed as a function of their internal energies. Isomerisation from azulene radical cation towards naphthalene radical cation in a timescale faster than 80 μs was monitored, whereas no reverse isomerisation was observed in the same time window. When energising C₁₀H₈⁺ with more than 6 eV, the reactivity of C₁₀H₈⁺ unveils the formation of a new isomeric group with a contrasted reactivity compared with naphthalene and azulene cations. We tentatively assigned these structures to phenylvinylacetylene cations.     

Quantum chemical characterization of the vertical electron affinities of didehydroquinolinium and didehydroisoquinolinium cations

Vertical electron affinities (EA) are predicted for the lowest energy singlet states of the 21 didehydroquinolinium cation isomers and the 21 didehydroisoquinolinium cation isomers, as well as the doublet states of the seven dehydroquinolinium cation isomers, the seven dehydroisoquinolinium cation isomers, the seven N-methyldehydroquinolinium cations, and the seven N-methyldehydroisoquinolinium cations, by using density functional theory. For the monoradicals, the calculated EA of the radical site depends only on the distance from the (formally charged) nitrogen atom, and is reduced by 0.14-0.24 eV when the NH+ group is replaced with an NCH3+ group. Nearly all of the calculated EAs for the ortho biradicals are lower (by 0.04-0.72 eV) than those for either of the corresponding monoradicals. For the meta biradicals, the calculated EAs lie either between the EAs of the corresponding monoradicals or higher (by 0.07-0.58 eV), and they are extremely sensitive to the separation (distance) between the two dehydrocarbon atoms. For the biradicals that do not have either an ortho or meta relationship the calculated EAs are all higher (by 0.02-1.93 eV) than those for either of the corresponding monoradicals. The EAs are examined to gain insight into the nature of inductive/field and resonance effects that influence the electrophilicity of the radical site(s), which is a major factor controlling the reactivity of these types of (bi)radicals.     

Reactivity Controlling Factors for an Aromatic Carbon‐Centered σ,σ,σ‐Triradical: The 4,5,8‐Tridehydroisoquinolinium Ion

The chemical properties of the 4,5,8‐tridehydroisoquinolinium ion (doublet ground state) and related mono‐ and biradicals were examined in the gas phase in a dual‐cell Fourier‐transform ion cyclotron resonance (FT‐ICR) mass spectrometer. The triradical abstracted three hydrogen atoms in a consecutive manner from tetrahydrofuran (THF) and cyclohexane molecules; this demonstrates the presence of three reactive radical sites in this molecule. The high (calculated) electron affinity (EA=6.06 eV) at the radical sites makes the triradical more reactive than two related monoradicals, the 5‐ and 8‐dehydroisoquinolinium ions (EA=4.87 and 5.06 eV, respectively), the reactivity of which is controlled predominantly by polar effects. Calculated triradical stabilization energies predict that the most reactive radical site in the triradical is not position C4, as expected based on the high EA of this radical site, but instead position C5. The latter radical site actually destabilizes the 4,8‐biradical moiety, which is singlet coupled. Indeed, experimental reactivity studies show that the radical site at C5 reacts first. This explains why the triradical is not more reactive than the 4‐dehydroisoquinolinium ion because the C5 site is the intrinsically least reactive of the three radical sites due to its low EA. Although both EA and spin–spin coupling play major roles in controlling the overall reactivity of the triradical, spin–spin coupling determines the relative reactivity of the three radical sites.     

Gas-phase reactivity of charged pi-type biradicals

Four pi,pi-biradicals, 2,6-dimethylenepyridinium and the novel isomers N-(3-methylenephenyl)-3-methylenepyridinium, N-phenyl-3,5-dimethylenepyridinium, and N-(3,5-dimethylenephenyl)pyridinium ions, were generated and structurally characterized in a Fourier transform ion cyclotron resonance mass spectrometer. Their gas-phase reactivity toward various reagents was compared to that of the corresponding monoradicals, 2-methylenepyridinium, N-phenyl-3-methylenepyridinium, and N-(3-methylenephenyl)pyridinium ions. The biradicals reactivity was found to reflect their predicted multiplicity. The 2,6-dimethylenepyridinium ion, the only biradical in this study predicted to have a closed-shell singlet ground state, reacts significantly faster than the other biradicals, which are predicted to have triplet ground states. In fact, this biradical reacts at a higher rate than the analogous monoradical, which suggests that to avoid the costly uncoupling of its unpaired electrons, the biradical favors ionic mechanisms over barriered radical pathways. In contrast, the second-order reaction rate constants of the isomeric biradicals with triplet ground states are well approximated by those of the analogous monoradicals, although the final reaction products are sometimes different. This difference arises from rapid radical-radical recombination of the initial monoradical reaction products. The overall reactivity toward the hydrogen-atom donors benzeneselenol and tributylgermanium hydride is significantly greater for the radicals with the charged site in the same ring system as the radical site. This finding indicates that polar effects play an important role in controlling the reactivity of pi,pi-biradicals, just as has been demonstrated for sigma,sigma-biradicals.     

Reactivity of the N-methylene-5,8-didehydroisoquinolinium triradical ion

The reactivity of a sigma,sigma,pi-triradical, N-methylene-5,8-didehydroisoquinolinium ion, has been compared to that of four related mono- and biradicals in a Fourier transform ion cyclotron resonance mass spectrometer. The triradical contains two weakly interacting orthogonal radical systems-the sigma,sigma-biradical moiety and the pi-monoradical moiety. The sigma,sigma-biradical moiety is found to be substantially more reactive than the pi-radical moiety. The pi-radical site reacts only after reactions have quenched the sigma-radical sites.     

Reactivity of the 4,5‐Didehydroisoquinolinium Cation

The chemical properties of a 1,8‐didehydronaphthalene derivative, the 4,5‐didehydroisoquinolinium cation, were examined in the gas phase in a dual‐cell Fourier‐transform ion cyclotron resonance (FT‐ICR) mass spectrometer. This is an interesting biradical because it has two radical sites in close proximity, yet their coupling is very weak. In fact, the biradical is calculated to have approximately degenerate singlet and triplet states. This biradical was found to exclusively undergo radical reactions, as opposed to other related biradicals with nearby radical sites. The first bond formation occurs at the radical site in the 4‐position, followed by that in the 5‐position. The proximity of the radical sites leads to reactions that have not been observed for related mono‐ or biradicals. Interestingly, some ortho‐benzynes have been found to yield similar products. Since ortho‐benzynes do not react via radical mechanisms, these products must be especially favorable thermodynamically.     

Reactivity of aromatic σ,σ-biradicals toward riboses

The gas-phase reactions of sugars with aromatic, carbon-centered sigma,sigma-biradicals with varying polarities [as reflected by their calculated electron affinities (EA)] and extent of spin-spin coupling [as reflected by their calculated singlet-triplet (S-T) gaps] have been studied. The biradicals are positively charged, which allows them to be manipulated and their reactions to be studied in a Fourier-transform ion cyclotron resonance mass spectrometer. Hydrogen atom abstraction from sugars was found to be the dominant reaction for the biradicals with large EA values, while the biradicals with large S-T gaps tend to form addition/elimination products instead. Hence, not all sigma, sigma-biradicals may be able to damage DNA by hydrogen atom abstraction. The overall reaction efficiencies of the biradicals towards a given substrate were found to be directly related to the magnitude of their EA values, and inversely related to their S-T gaps. The EA of a biradical appears to be a very important rate-controlling factor, and it may even counterbalance the reduced radical reactivity characteristic of singlet biradicals that have large S-T gaps.     

Synthesis of charged phenyl radicals and biradicals by laser photolysis in a Fourier-transform ion cyclotron resonance mass spectrometer

The feasibility of generating substituted phenyl radicals and biradicals (with a charged substituent) in the gas phase by laser photolysis was examined by using a Fourier-transform ion cyclotron resonance mass spectrometer. The precursors were generated by ipso-substitution of a halogen atom in the radical cation of a di- or trihalobenzene by various nucleophiles. Photolytic cleavage of the remaining carbon-halogen bond(s) with 266-nm radiation was found to produce many substituted phenyl radicals in greater yields than the earlier employed method, sustained off-resonance irradiated collision-activated dissociation (SORI-CAD). Furthermore, ion generation by photolysis leads to isomerization less often than collisional activation. Finally, not only phenyl-bromine and phenyl-iodine but also certain phenyl-chlorine bonds can be cleaved by photolysis, whereas the synthetic utility of SORI-CAD appears to be largely limited to the cleavage of phenyl-iodine bonds. Hence, laser photolysis greatly expands the variety of substituted phenyl radicals and biradicals that can be synthesized inside a mass spectrometer.     

Reactivity of the 4,5-didehydroisoquinolinium cation

The chemical properties of a 1,8-didehydronaphthalene derivative, the 4,5-didehydroisoquinolinium cation, were examined in the gas phase in a dual-cell Fourier-transform ion cyclotron resonance (FT-ICR) mass spectrometer. This is an interesting biradical because it has two radical sites in close proximity, yet their coupling is very weak. In fact, the biradical is calculated to have approximately degenerate singlet and triplet states. This biradical was found to exclusively undergo radical reactions, as opposed to other related biradicals with nearby radical sites. The first bond formation occurs at the radical site in the 4-position, followed by that in the 5-position. The proximity of the radical sites leads to reactions that have not been observed for related mono- or biradicals. Interestingly, some ortho-benzynes have been found to yield similar products. Since ortho-benzynes do not react via radical mechanisms, these products must be especially favorable thermodynamically.     

Direct strand scission in double stranded RNA via a C5-pyrimidine radical

Nucleobase radicals are the major family of reactive intermediates produced when nucleic acids are exposed to γ-radiolysis. The 5,6-dihydrouridin-5-yl radical (1), the formal product of hydrogen atom addition and a model for hydroxyl radical addition, was independently generated from a ketone precursor via Norrish Type I photocleavage in single and double stranded RNA. Radical 1 produces direct strand breaks at the 5'-adjacent nucleotide and only minor amounts of strand scission are observed at the initial site of radical generation. Strand scission occurs preferentially in double stranded RNA and in the absence of O(2). The dependence of strand scission efficiency from the 5,6-dihydrouridin-5-yl radical (1) on secondary structure under anaerobic conditions suggests that this reactivity may be useful for extracting additional RNA structural information from hydroxyl radical reactions. Varying the identity of the 5'-adjacent nucleotide has little effect on strand scission. Internucleotidyl strand scission occurs via β-elimination of the 3'-phosphate following C2'-hydrogen atom abstraction by 1. The subsequently formed olefin cation radical yields RNA fragments containing 3'-phosphate or 3'-deoxy-2'-ketonucleotide termini from competing deprotonation pathways. The ketonucleotide end group is favored in the presence of low concentrations of thiol, presumably by reducing the cation radical to the enol. Competition studies with thiol show that strand scission from the 5,6-dihydrouridin-5-yl radical (1) is significantly faster than from the 5,6-dihydrouridin-6-yl radical (2) and is consistent with computational studies using the G3B3 approach that predict the latter to be more stable than 1 by 2.8 kcal/mol.     

Lamp versus Laser Photolysis of a Bichromophoric Dichloroalkane: Chemical Evidence for the Two-Photon Generation of the 1,5-Diphenylpentanediyl Biradical

Low intensity (lamp) photolysis of 1,5-dichloro-1,5-diphenylpentane (1) leads to the formation of the 1-chloro-1,5-diphenylpentyl radical (7) through C-Cl bond cleavage. Radical 7 leads to the final products through typical free radical reactions. No cyclopentanes are formed under low intensity conditions. In contrast, high intensity laser irradiation leads to C-Cl photocleavage of radical 7 to yield the 1,5-diphenylpentanediyl biradical (11), which results in the formation of isomeric cis- and trans-1,2-diphenylcyclopentanes; the behavior of these biradicals agrees well with that observed when their precursor is 2,6-diphenylcyclohexanone. Two-color two-laser experiments suggest that both singlet and triplet biradicals are formed, even if only the latter are detectable with nanosecond techniques.     

Structure and Reactivity of the Distonic and Aromatic Radical Cations of Tryptophan

In this work, we regiospecifically generate and compare the gas-phase properties of two isomeric forms of tryptophan radical cations—a distonic indolyl N-radical (H₃N⁺ - TrpN^?) and a canonical aromatic π (Trp^?+) radical cation. The distonic radical cation was generated by nitrosylating the indole nitrogen of tryptophan in solution followed by collision-induced dissociation (CID) of the resulting protonated N-nitroso tryptophan. The π-radical cation was produced via CID of the ternary [Cu^II(terpy)(Trp)] ^?2+ complex. CID spectra of the two isomeric species were found to be very different, suggesting no interconversion between the isomers. In gas-phase ion-molecule reactions, the distonic radical cation was unreactive towards n-propylsulfide, whereas the π radical cation reacted by hydrogen atom abstraction. DFT calculations revealed that the distonic indolyl radical cation is about 82 kJ/mol higher in energy than the π radical cation of tryptophan. The low reactivity of the distonic nitrogen radical cation was explained by spin delocalization of the radical over the aromatic ring and the remote, localized charge (at the amino nitrogen). The lack of interconversion between the isomers under both trapping and CID conditions was explained by the high rearrangement barrier of ca.137 kJ/mol. Finally, the two isomers were characterized by infrared multiple-photon dissociation (IRMPD) spectroscopy in the ~1000–1800 cm^–1 region. It was found that some of the main experimental IR features overlap between the two species, making their distinction by IRMPD spectroscopy in this region problematic. In addition, DFT theoretical calculations showed that the IR spectra are strongly conformation-dependent.      

Experimental and theoretical characterization of the 3,5-didehydrobenzoate anion: a negatively charged meta-benzyne

A negatively charged analogue of meta-benzyne, 3,5-didehydrobenzoate, was synthesized in a Fourier transform ion cyclotron resonance mass spectrometer, and its reactivity was compared to that of the same ion generated previously in a flowing afterglow apparatus and to its positively charged cousin, N-(3,5-didehydrophenyl)-3-fluoropyridinium. 3,5-Didehydrobenzoate was found to react as a nucleophile with electrophilic reagents. In contrast, N-(3,5-didehydrophenyl)-3-fluoropyridinium does not react with the same electrophilic reagents but reacts instead with nucleophilic reagents. Neither ion is able to abstract hydrogen atoms from typical hydrogen atom donors. The absence of any radical reactivity for these meta-benzynes is consistent with predictions that radical reactions of singlet biradicals should be hindered as compared to their monoradical counterparts. High-level calculations predict that the carboxylate moiety does not significantly perturb the singlet-triplet splitting of 3,5-didehydrobenzoate relative to the parent meta-benzyne.     

Reactivity of 4-vinylphenol radical cations in solution: implications for the biosynthesis of lignans

Nanosecond laser flash photolysis studies of the radical cation of 4-hydroxy-3-methoxystyrene show that the radical cation reacts with neutral 4-hydroxy-3-methoxystyrene and non-phenolic styrenes with rate constants that range from 1 x 10(8) to 5 x 10(8) M(-1) s(-1). Similar 4-vinylphenol radical cations such as the radical cations of isoeugenol and coniferyl alcohol display reduced reactivity, presumably due to the presence of beta-alkyl substituents. Overall, the results show that the reactivity of 4-vinylphenol radical cations with neutral styrenes parallels the reactivity of non-phenolic styrene radical cations, which are known to undergo efficient radical cation mediated dimerization reactions to give lignan-like compounds. The possibility that the biosynthesis of some lignans may follow a radical cation mediated mechanism is discussed.     

Isomerization and fragmentation reactions of gaseous phenylarsane radical cations and phenylarsanyl cations. A study by tandem mass spectrometry and theoretical calculations

The unimolecular reactions of radical cations and cations derived from phenylarsane, C6H5AsH2 (1) and dideutero phenylarsane, C6H5AsD2 (1-d2), were investigated by methods of tandem mass spectrometry and theoretical calculations. The mass spectrometric experiments reveal that the molecular ion of phenylarsane, 1*+, exhibits different reactivity at low and high internal excess energy. Only at low internal energy the observed fragmentations are as expected, that is the molecular ion 1*+ decomposes almost exclusively by loss of an H atom. The deuterated derivative 1-d2 with an AsD2 group eliminates selectively a D atom under these conditions. The resulting phenylarsenium ion [C6H5AsH]+, 2+, decomposes rather easily by loss of the As atom to give the benzene radical cation [C6H6]*+ and is therefore of low abundance in the 70 eV EI mass spectrum. At high internal excess energy, the ion 1*+ decomposes very differently either by elimination of an H2 molecule, or by release of the As atom, or by loss of an AsH fragment. Final products of these reactions are either the benzoarsenium ion 4*+, or the benzonium ion [C6H7]+, or the benzene radical cation, [C6H6]*+. As key-steps, these fragmentations contain reductive eliminations from the central As atom under H-H or C-H bond formation. Labeling experiments show that H/D exchange reactions precede these fragmentations and, specifically, that complete positional exchange of the H atoms in 1*+ occurs. Computations at the UMP2/6-311+G(d)//UHF/6-311+G(d) level agree best with the experimental results and suggest: (i) 1*+ rearranges (activation enthalpy of 93 kJ mol(-1)) to a distinctly more stable (DeltaH(r)(298) = -64 kJ mol(-1)) isomer 1 sigma*+ with a structure best represented as a distonic radical cation sigma complex between AsH and benzene. (ii) The six H atoms of the benzene moiety of 1 sigma*+ become equivalent by a fast ring walk of the AsH group. (iii) A reversible isomerization 1+<==>1 sigma*+ scrambles eventually all H atoms over all positions in 1*+. The distonic radical cation 1*+ is predisposed for the elimination of an As atom or an AsH fragment. The calculations are in accordance with the experimentally preferred reactions when the As atom and the AsH fragment are generated in the quartet and triplet state, respectively. Alternatively, 1*(+) undergoes a reductive elimination of H2 from the AsH2 group via a remarkably stable complex of the phenylarsandiyl radical cation, [C6H5As]*+ and an H2 molecule.     

Intrinsic acidity and redox properties of the adenine radical cation

The intrinsic chemical properties of the gaseous adenine radical cation were examined by using dual cell Fourier transform ion cyclotron resonance mass spectrometry. The adiabatic recombination energy of the radical cation (ionization energy of neutral adenine) was found by bracketing experiments to be 8.55 ± 0.1 eV (at 298 K; earlier literature values range from 8.3 to 8.9 eV). Based on this value, the heat of formation (ΔH_f²⁹⁸) of the adenine radical cation is estimated to be 246 ± 3 kcal/mol. The acidity (ΔH_acid²⁹⁸) of the adenine radical cation was bracketed to be 221 ± 2 kcal/mol. These thermochemical values suggest that the adenine radical cation reacts with neutral guanine by electron abstraction or proton transfer, with neutral cytosine by proton transfer, and via neither pathway with neutral thymine, molecular water or a sugar moiety of DNA (modeled by tetrahydrofuran). Experimental examination of the gas-phase reactivity of the adenine radical cation revealed a slow deuterium atom abstraction from perdeuterated tetrahydrofuran. Hence, in the absence of a nearby guanine or cytosine, the adenine radical cation may be able to abstract a hydrogen atom from a sugar moiety of DNA.     

A new approach to the synthesis of strained cyclic systems: II. Mass spectrometric study of 2-dialkylamino-3-phenylthiophenes and their structural isomers, iminothietanes and iminocyclobutenes

Triads of isomeric N-alkyl-N-methyl-3-phenylthiophen-2-amines, N-methyl-3-alkyl-4-methylidene-3-phenylthietan-2-imines, and N-methyl-4-alkylsulfanyl-2-phenylcyclobut-2-en-1-imines (Alk = Me, Et, Bu) were synthesized from 1,3-dilithio-3-phenylpropyne, methyl isothiocyanate, and alkyl halides, and their fragmentation under electron impact was studied. Primary decomposition of the molecular ions of 2-aminothiophenes is determined by the localization of a radical cation center on the nitrogen atom, and it follows a path typical of alkyl(aryl)amines with elimination of hydrogen atom or methyl or propyl radical from the α-carbon atom in the N-alkyl substituent. Fragmentation of the iminothietanes involves cleavage of the four-membered ring in half to give neutral MeNCS molecule and 1-alkyl-1-phenylallene radical cation. Alkylsulfanyl(imino)-cyclobutenes undergo cleavage at the sulfur-containing side chain according to general relations holding in the fragmentation of alkyl sulfides.     

Synthesis and properties of air-stable 1,3-diphosphacyclobutane-2,4-diyls and the related compounds

A kinetically stabilized phosphaalkyne bearing a bulky Mes^∗ (2,4,6-tri-t-butylphenyl) group is useful compound to prepare an enormous number of highly stable 1,3-diphosphacyclobutane-2,4-diyls through reactions with a lithium reagent and an electrophile. By utilizing this synthetic protocol, we prepared several non-symmetrical 1,3-diphosphacyclobutane-2,4-diyls in which the substituents on the phosphorus are different. Furthermore, we succeeded in preparation and characterization of novel air-tolerant symmetrical 2,4-bis(2,4,6-tri-t-butylphenyl)-1,3-diphosphacyclobutane-2,4-diyls bearing the identical alkyl substituents on the phosphorus atoms. Structures and properties of the 1,3-diphosphacyclobutane-2,4-diyls indicate characters as singlet ground-state carbon centered biradicals. In addition to those biradicals, we succeeded in preparation and isolation of a novel P-heterocyclic air-stable neutral radical as well as a P-heterocyclic cation radical.