Molecular Imprinting of Small Molecules with Organic Silanes: Fluorescence Detection

Abstract

Small molecules, peptides, and proteins can be imprinted using mixtures of organic silanes. Molecular imprints may serve as artificial receptors, i.e., biosensor sensing elements for detection of chemical and biological toxins, drugs, and environmental hazards. One method for detection of imprint-bound molecules is fluorescence. Molecular imprints to N-acetyltryptophanamide (NATA) and fluorescein were prepared, and their respective binding constants determined using steady-state fluorescence spectroscopy. Stern-Volmer fluorescence quenching plots of imprint-bound molecules using potassium iodide (KI) and acrylamide indicate bound molecules are shielded from the solvent environment. Scatchard plot analysis revealed two binding affinities, i.e., aK_d = 0.13 and 2.5 μM for NATA binding to NATA imprints. Interestingly, NATA exhibited higher affinity, i.e., K_d = 1.3 and 35 nM, for the fluorescein imprint. These data support the usefulness of fluorescence techniques in molecular imprint-based detection technology.     

Fluorescence Quenching and Binding Interaction of l0-Methylacridinium Iodide to Nucleic Acids

Interaction of 10‐methylacridinium iodide (MAI) as fluorescence probe with nucleobases, nucleosides and nucleic acids has been studied by UV‐visible absorption and fluorescence spectroscopy. It was found that fluorescence of MAI is strongly quenched by the nucleobases, nucleosides and nucleic acids, respectively. The quenching follows the Stern‐Volmer linear equation. The fluorescence quenching rate constant (k_q) was measured to be 10^9‐10¹⁰ (L/mol)/s within the range of diffusion‐controlled rate limit, indicating that the interaction between MAI and nucleic acid and their precursors is characteristic of electron transfer mechanism. In addition, the binding interaction model of MAI to calf thymus DNA (ct‐DNA) was further investigated. Apparent hypochromism in the absorption spectra of MAI was observed when MAI binds to ct‐DNA. Three spectroscopic methods, which include (1) UV spectroscopy, (2) fluorescence quenching of MAI, (3) competitive dual‐probe method of MAI and ethidium bromide (EB), were utilized to determine the affinity binding constants (K) of MAI and ct‐DNA. The binding constants K obtained from the above methods gave consistent data in the same range (1.0–5.5) × 10⁴L/mol, which lend credibility to these measurements. The binding site number was determined to be 1.9. The influence of thermal denaturation and phosphate concentration on the binding was examined. The binding model of MAI to ct‐DNA including intercalation and outside binding was investigated.     

Helicenoid-based bis-1,2,3-triazole tweezer: Synthesis and selective iodide sensing

Abstract

Novel helicenoid based 1,2,3-triazole tweezer 4 was synthesized using a multistep synthetic protocol with high yields from 2,7-Dihydroxynaphtlene 3 as a precursor. This helicenoid-based bis-1,2,3-triazole tweezer 4 selectively causes non-covalent interaction with iodide anion. The UV-vis absorption exhibited enhancement while fluorescence spectra exhibited significant quenching. ¹H NMR titration showed shift of 1,2,3-triazole C-H signal with an increase in iodide concentration. Association constant of 3.818?×?10⁴ M^?1 was recorded for the host interaction with iodide ions. This value of association constant for iodide sensing using 1,2,3-triazole is the best reported so far for hosts with 1,2,3-triazole moiety and suggests that the helicenoid geometry is responsible for this remarkable behavior.     

Rational design of a macrocycle-based chemosensor for anions

A macrocycle-based fluorescence chemosensor has been designed and synthesized from the reaction of dansyl chloride and a hexaaminomacrocycle containing four secondary and two tertiary amines. The new chemosensor has been examined for its binding ability towards phosphate, sulfate, nitrate, iodide, bromide, chloride, and fluoride by fluorescence spectroscopy in DMSO. The results indicate that the compound binds each of the anions with a 1:1 stoichiometry, showing high affinity for oxoanions, chloride, and iodide with binding constants up to four orders of magnitude. Ab initio calculations based on density functional theory (DFT) suggest that the ligand is deformed in order to encapsulate an anion, and each anion, except fluoride, is bonded to the macrocycle through two NH?X⁻ and four CH?X⁻ interactions.     

Calix[4]arene-based crab-like molecular sensors for highly selective detection of mercury and copper ions

In this work, two novel chemosensors based on calix[4]arene bearing (thio)barbituric acid groups (BC1 and BC2) were synthesised, and their structures were characterised by HRMS, NMR and FTIR. Furthermore, their binding properties towards various biologically relevant metal ions were studied by fluorescence titrations, ¹H NMR spectroscopies and Job’s plot evaluations. The chemosensor BC1 displayed excellent binding affinity and selectivity towards Cu²⁺, which was characterised using fluorescence spectroscopy. On the other hand, BC2 exhibited a very remarkable fluorescence enhancement as well as visible colour change from pale green to sunset yellow, in presence of Hg²⁺ ions. Finally, Job’s plot method revealed 1:1 binding stoichiometry for both BC1:Cu²⁺ complex and BC2:Hg²⁺ complex.     

Poly‐p‐phenylenevinylene‐g‐poly(2‐(methacryloyloxy)Ethyl)trimethylammonium chloride (PPV‐g‐PMETAC): A fluorescent,water‐soluble,selective anion sensor

The photophysical and ion‐sensing properties of densely grafted conjugated polymer poly‐p‐phenylenevinylene‐g‐poly(2‐(methacryloyloxy)ethyl)trimethylammonium chloride (PPV‐g‐PMETAC) are presented herein. The grafted polymer exhibits excellent iodide‐sensing which is easily observed using fluorescence spectroscopy. The iodide detection limit for PPV‐g‐PMETAC was found to be 10 nM and was independent of temperature and pH <12. The change in fluorescence of PPV‐g‐PMETAC, upon exposure to iodide, was attributed to polymer aggregation due to changes in the morphology of the grafted PMETAC side chains, which was observed using atomic force microscopic and dynamic light scattering studies. © 2018 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2018 , 56, 1997–2003     

The Synthesis of Novel Macrocycles,Part V. The Coumarin Crown Ethers and Cation Binding with Fluorescence Spectra

Abstract

The 4-H, 4-methyl and 4-phenyl derivatives of benzo-α-pyrone of 12-crown-4 and 15-crown-5 were synthesised starting from 4-substituted-6,7-dihydroxy- and 7,8-dihydroxybenzo-α-pyrones which reacted with dichloropolyethylene glycols in DMF/water/alkali carbonate. The coumarin-macrocycles were identified by elemental analysis, IR, EI-GC-MS as well as ¹H, ¹³C NMR spectroscopy. The full experimental and spectral data is reported along with ion binding data studied in acetonitrile using fluorescence spectroscopy. The binding of the fluorogenic coumarin-crowns with Li⁺, Na⁺ and K⁺ were recognized as specific alterations on their fluorescence spectra that strongly originated from the structures. The observed CEQFS depending on the bound cation radii and macrocycle size evidenced the rules of cationic recognition of macrocycles. Some 15-crown-5 derivatives exhibited interesting Li⁺ and Na⁺ binding selectivities.     

Comparative Study of Carbon Paste,Screen Printed,and PVC Potentiometric Sensors Based on Copper‐sulphamethazine Schiff Base Complex for Determination of Iodide – Experimental and Theoretical Approaches

New poly vinyl chloride (PVC) membrane, carbon paste (CP), and screen printed (SP) electrodes are constructed for iodide sensing. They are based on copper (II)‐sulphamethazine Schiff base complex as suitable carrier. Mechanism was proved by FT‐IR and UV‐Vis spectroscopy. Computational study involving binding energies calculations at DFT/B3LYP level of theory confirmed the proposed mechanism and agreed the observed selectivity pattern. Responses are near‐Nernstian (?55.0, ?51.0 mV/concentration decade) for PVC, and SP electrodes, and super‐Nernstian (?61.2 mV/concentration decade) for the CP electrode. Lower limit of detection (3.2×10^?6 mol L^?1) and improved selectivity over the highly interfering thiocyanate were obtained in comparison with the previously reported Schiff base complexes‐based iodide sensors.     

A rapid method for estimating iodine-125 in water samples using X-ray fluorescence for yield correction

Large sample volumes are needed when monitoring low levels of¹²⁵I in fresh water systems. Small anion exchange resin columns concentrate the radioactivity and also act as counting sources in thin NaI(T1) well scintillation detectors. Isotope identity is confirmed by decay counting or Ge spectroscopy. Recovery corrections are made by comparing the X-ray fluorescence of stable iodide carrier added initially with that retained on the counting column. The benefits from this simple, quick and accurate procedure could be adapted to other radiochemical estimations which rely on carrier recovery.     

Ion-isotopic exchange reaction kinetics using organic base anion exchange resins Indion-102 and Indion GS-400

The present study deals with the kinetic study of iodide and bromide ion-isotopic exchange reactions in organic based anion exchange resins Indion-102 (nuclear grade) and Indion GS-400 (non-nuclear grade) using radiotracer isotopes. The resins in iodide and bromide form were equilibrated respectively with iodide and bromide ion solutions which were previously spiked with ¹³¹I and ⁸²Br radiotracer isotopes. For both bromide and iodide ion-isotopic exchange reactions, it was observed that the values of specific reaction rate increase with increase in ion concentration from 0.001 to 0.004 M at a constant temperature of 40.0°C. However, at constant ion concentration of 0.003 M, the specific reaction rate was observed to decrease with rise in temperature from 30.0 to 45.0°C. Also it was observed that for iodide ion-isotopic exchange reaction by using Indion-102 resin, the values of specific reaction rate, amount of iodide ion exchanged, initial rate of iodide ion exchange and logK _d were 0.258 min^?1, 0.492 mmol, 0.127 mmol/min and 19.2, respectively, which were higher than 0.208 min^?1, 0.416 mmol, 0.087 mmol/min and 17.6, respectively, obtained by using Indion GS-400 resin under identical experimental conditions of 40.0°C, 1.000 g of ion exchange resin and 0.003M labeled iodide ion solution. The same trend was observed for the two resins during bromide ion-isotopic exchange reaction. The overall results indicate that, under identical experimental conditions, Indion-102 resin shows higher performance than Indion GS-400 resin.     

Crystal structures,antibacterial, antioxidant and nucleic acid interactions of mononuclear,and tetranuclear palladium(II) complexes containing Schiff base ligands

Two new palladium complexes, [Pd(dpbs)Cl] (1) and [Pd₄(dbbs)₄] (2) (where (dpbs)₂ = o,o′-(N,N′-dipicolinyldene)diazadiphenyl disulfide and (dbbs)₂ = N,N′-(1,1′-dithio-bis(phenylene))-bis(salicylideneimine)), have been synthesized and characterized by analytical and spectral (electronic, IR, ¹H, ¹³C spectroscopy) techniques. The structures of 1 and 2 have been solved by single-crystal X-ray diffraction experiments, which indicate distorted square planar coordination geometries around palladium(II) by O, N, and S donors. The metal chelates have been screened for their antibacterial and antioxidant activities, and compared with their respective ligands. The binding properties of the complexes have been studied by electronic absorption, emission spectroscopy, and viscosity measurements. The competitive fluorescence study with ethidium bromide and the effect of iodide concentration on ?uorescence of the complex-DNA system have been investigated. All these experimental results suggest that palladium complexes strongly bind to DNA, presumably via groove binding. The thermodynamic parameters, enthalpy change (ΔH°), and entropy change (ΔS°) were calculated by the Van’t Hoff equation, suggesting hydrogen bonds play a predominant role in the binding of complexes to DNA.     

水溶性桥联双卟啉与DNA相互作用的研究

以4,4'-二羧酸-2,2'-联吡啶为桥联试剂, 合成了一种含8个阳离子的水溶性桥联双卟啉(PD). 以5,10,15,20-四(4-N-甲基吡啶盐)卟啉(H₂TMPyP)为参照物, 使用紫外-可见光谱、荧光光谱、圆二色谱研究了水溶性双卟啉与小牛胸腺DNA (CT DNA)的相互作用, 以溴化乙啶(EB)竞争法测定了PD与CT DNA的表观键合常数(K_app)为1.2×10⁶ L•mol^－1 (H₂TMPyP为6.9×10⁶ L•mol^－1), 并使用凝胶电泳研究了PD对pBR322质粒DNA的切割能力. 实验结果表明PD与CT DNA的作用方式是插入和外部结合的混合模式.     

A new coumarin-based fluorescence turn-on chemodosimeter for Cu in water

A highly selective and sensitive coumarin-based chemodosimeter 1 for Cu²⁺ in water is reported in this work. 1 was designed and facilely synthesized by a one-step reaction with coumarin as a fluorophore and 2-picolinic acid as the binding moiety, which showed very week fluorescence in buffer solution, and its fluorescence was considerably enhanced by the addition of Cu²⁺ at room temperature in 5 min. Mechanism study suggested that Cu²⁺ promoted the hydrolysis of 1 via the catalytic sensing cycle, generating a highly fluorescent product 7-hydroxycoumarin with fluorescence signal greatly amplified. The probe exhibited remarkably selective fluorescence enhancement to Cu²⁺ over other metal ions at 454 nm, with a detection limit of 35 nM Cu²⁺. Under optimal condition, 1 was successfully used for the determination of Cu²⁺ in fetal equine serum and two water samples.     

Binding of Ionic Pyrene Derivatives to Polyelectrolytes. A Uv Absorption and Fluorescence Study

Abstract

The binding of pyrenesulfonic acid and pyrenebutyric acid to poly(vinyl benzyl trimethylammonium) chloride was investigated by UV and fluorescence spectroscopy. It was found that the binding constant was 7.5 × 10⁴ and 3.5 × 10⁴M^?1, respectively. The addition of the polyelectrolyte quenches the fluorescence of the pyrene group, and at the same time the typical excimer emission appears. This emission originates in pre-formed ground state aggregates of the pyrene derivatives incorporated into the polyion domain. Similar effects were observed when anionic polyelectrolytes, poly(styrene sulfonic), and poly(vinyl sulfonic) acids were added to cationic pyrene derivatives. The binding constants depend on the length of the aliphatic sidechain of the derivatives.     

Fluorescence quenching of triazatruxene-based glycocluster induced by peanut agglutinin lectin

A novel triazatruxene-based fluorescent glycocluster was synthesized and its selective binding interactions with PNA lectin were investigated by fluorescence spectroscopy,CD spectroscopy,and a turbidity assay.The glycocluster exhibited a strong binding affinity for PNA lectin with a Stern-Volmer quenching constant of 5.8×10⁵ mol^-1L     

Novel Synthesis and Characterization of N‐Substituted‐calix[4]azacrown Derivatives

Novel calix[4]azacrown derivatives from the reaction between calix[4]amidocrown and the different N‐(4‐bromoacetamidephthalimido)alkanes derivatives, which may be useful intemediate compounds of pseudorotaxane, have been synthesized and structurally characterized by IR, ¹H NMR, ¹³C NMR, MS, and elemental analyses. From their analysis data, it was found that compounds 6a–d adopted a cone conformation.     

Iodide selective fluorescent anion receptor with two methylene bridged bis-imidazolium rings on naphthalene

We have designed and synthesized fluorescent anion receptor 2, bearing two methylene bridged bis-imidazolium ring on 1,8-positions of naphthalene. Anion binding studies carried out using fluorescence spectroscopy and ¹H NMR revealed that this compound displays selective affinities for iodide ion.     

A ratiometric fluorescent probe for zinc ions based on the quinoline fluorophore

A ratiometric fluorescent zinc probe 1 of carboxamidoquinoline with a carboxylic acid group was designed and synthesised. Probe 1 exhibits high selectivity for sensing Zn²⁺; about a 13-fold increase in fluorescence emission intensity and an 82?nm red-shift of fluorescence emission are observed upon binding Zn²⁺ in EtOH/H₂O (1?:?1, V/V) solution. The ratiometric fluorescence response is attributed to the 1?:?1 complex formation between probe 1 and Zn²⁺ which has been utilised as the basis for the selective detection of Zn²⁺. The analytical performance characteristics of the proposed Zn²⁺-sensitive probe were investigated. The linear response range covers a concentration range of Zn²⁺ from 2.0?×?10^?6 to 5.0?×?10^?5?mol?L^?1 and the detection limit is 2.7?×?10^?7?mol?L^?1. The determination of Zn²⁺ in both tap and river water samples shows satisfactory results.     

Chloride binding by a polyimidazolium macrocycle detected via fluorescence,NMR, and X-ray crystallography

Herein, we describe a macrocyclic polyimidazolium receptor that is preorganized for the binding of anionic guests, and particularly chloride. Additionally, diphenylimidazolium units were incorporated into this structure to enhance photophysical properties that were exploited for signal transduction of binding. In subsequent fluorescence binding studies, this receptor was found to bind a range of halides as well as phosphate with high affinity (K_a=1.8×10⁴, and 1.5×10⁴ for phosphate and chloride, respectively) in a competitive solvent mixture (1:1 water/acetonitrile). Results under these conditions were fitted to 1:1 binding curves, and indicated modest selectivity of the host for phosphate and chloride over other halides. Binding studies were also performed using ¹H NMR spectroscopy, during which the imidazolium C–H signal was observed to shift downfield upon titration with anions. These experiments were run in less polar solvent (1:9 water/acetonitrile), and could not be fitted to a 1:1 binding curve, suggesting higher order aggregates in this environment. Binding was further probed in the solid state by obtaining an X-ray crystal structure of receptor–iodide complex. In the resulting structure, two iodides were found to bind through interactions with two polyimidazolium hydrogens each. These results show that the described macrocycle is effective for anion-binding in competitive solvent, with modest selectivity for chloride over other halides, and that the nature of the binding interactions varies depending upon the solvent environment.     

Interaction Study between ESIPT Fluorescent Lipophile-Based Benzazoles and BSA

In this study, the interactions of ESIPT fluorescent lipophile-based benzazoles with bovine serum albumin (BSA) were studied and their binding affinity was evaluated. In phosphate-buffered saline (PBS) solution these compounds produce absorption maxima in the UV region and a main fluorescence emission with a large Stokes shift in the blue–green regions due to a proton transfer process in the excited state. The interactions of the benzazoles with BSA were studied using UV-Vis absorption and steady-state fluorescence spectroscopy. The observed spectral quenching of BSA indicates that these compounds could bind to BSA through a strong binding affinity afforded by a static quenching mechanism (K_q~10¹² L·mol⁻¹·s⁻¹). The docking simulations indicate that compounds 13 and 16 bind closely to Trp134 in domain I, adopting similar binding poses and interactions. On the other hand, compounds 12, 14, 15, and 17 were bound between domains I and III and did not directly interact with Trp134.