Crystal structures of five policyclic compounds related to the natural product forskolin

(3(Z),4,6a,9a,9b)-(±)-3a,4,6a,7,8,9,9a,9b-octahydro-4,7,7, 9b-tetramethyl-3a-[3-(methoxymethyloxy)-3-methyl-1-butenyl]-5H-naphto[1,8-de]-1,3-dioxin-6-one (I), C₂₂H₃₆O₅,M _r=378.51, monoclinic,P2₁/n,a=6.330(1),b=14.576(2),c=22.837(2)Å,=93.04(1)°,V=2104.1(2)ų,Z=4,D _c=1.19 Mg/m³, (MoK)=0.71069Å,=0.8 cm^–1,F(000)=832,T=298 K,R=0.054 for 1971 observed reflections; (7a,10a,10b,12)-(±)-7a,9, 10,10a,10b,11,12,12a-octahydro-2,2,10,10,10b,12a-hexamethyl-2H,8H-1-benzopyrano[4a,5,6,-de][1,3,2]-benzodioxin-11-one (II), C₂₀H₂₉O₄,M _r=334.5, triclinic,P-1,a=10.595(2),b=12.152(1),c=8.073(1)Å,=106.53(1),=105.65(1), =66.29(1)°,V=897.9(2)ų,Z=2,D _c=1.24 Mg/m³, (MoK)=0.71069Å,=0.8 cm^–1,F(000)=362,T=298 K,R=0.046 for 2848 observed reflections; (7a,10a,10b,12, 12a)-(±)-7a,9,10,10a,10b,11,12,12a-octahydro-2,2,10,10,10b,12a-hexamethyl-2H,8H-1-benzopyrano[4a,5,6-de][1,3,2]-benzodioxin-11, 12-diol (III), C₂₀H₃₂O₅ (two molecules in the asymmetric unit),M _r=352.2, triclinic,P-1,a=12.948(3),b=13.615(3),c=12.197(4)Å,=101.16(2),=111.88(2), =69.48(2)°,V=1863.8(9)ų,Z=2,D _C=1.26 Mg/m³,(MoK)=0.71069 Å,=0.8 cm^–1,F(000)=768,T=298 K,R=0.060 for 4570 observed reflections; 4-acetoxy-4-[[(4a,5,8a)-(±)-hexahydro-4a,6,6-trimethyl-4H-1,3-benzodioxin-4-one]-5-yl]butan-2-one (IV), C₁₇H₂₆O₆,M _r=326.4, monoclinic,P2₁/c,a=10.495(2),b=12.050(2),c=14.216(2)Å,=108.51(1)°,V=1704.8(5)ų,Z=4,D _c=1.27 Mg/m³,(MoK)=0.71069 Å,=0.9 cm^–1,F(000)=704,T=298 K,R=0.049 for2455 observed reflections; (3a,4,5,6,6a,9a,9b)-(±)-4,5-epoxy-decahydro-3, 3a-dihydroxy-2-ethoxy-4,7,7,9b-tetramethyl-naphto-[1,8-bc]-pyran-6-ol-acetate (V), C₂₀H₃₂O₇,M _r=383.5, monoclinic,C2/c,a=10.353(2),b=17.975(3),c=21.188(3)Å,=91.29(1)°,V=3942(1)ų,Z=8,D _c=1.29 Mg/m³,(MoK)=0.71069 Å,=0.8 cm^–1,F(000)=1664,T=298 K,R=0.051 for 2120 observed reflections. We report here the complete structures of four decalin derivatives (compoundsI, II, III, V) and one related compound (compoundIV) synthetized in order to find an efficient synthetic approach for the natural productforskolin.     

Two acetylamino derivatives of 2,4-bis(trichloromethyl)-1,3-benzdioxin showing different types of hydrogen bonding: (a) (C13C)CH⋯O=C and (b) N-H⋯O=C

8-Acetylamino-6-methyl-2,4-bis(trichloromethyl)-1,3-benzdioxin, (I), is monoclinic,P2₁/c,a=15.174(4),b=11.977(7),c=9.911(3)Å,=99.72(2)°. 6-Acetylamino-2,4-bis(trichloromethyl)-1,3-benzdioxin, (II), is monoclinic,P2₁/_n,a=5.927(4),b=40.623(1),c =7.120(3)Å,=91.39(4)°. In compound (I) the imino hydrogen atom is locked in an intramolecular hydrogen bond to the proximate oxygen atom of the heterocyclic ring and is not available for intermolecular hydrogen bonding. Instead the weakly acidic hydrogen atom [Cl₃C-C(2)]H takes part in a hydrogen bond to the carbonyl oxygen atom in another molecule. In compound (II) a normal intermolecular hydrogen bond of the type N-HO=C occurs. The 6-acetylam-ino group is twisted about the (C_Ar-N) bond such that the angles NHO=C, C_ArH_ArO=C, NHOH_ArC_Ar, at the carbonyl oxygen group total 360° (where NH is in the related molecule). The packing in both compounds takes the form of infinite chains and in compound (II) partial overlap of the aromatic ring and the acetylamino group, with very little offset, also occurs.     

Crystal structure of tylophorine methiodide monohydrate,C25H30NO 4 + I−·H2O

The crystal structure of tylophorine (Chemical name 2,3,6,7 tetramethoxy phenanthro [9,10:6, 7] indolizidine. Contribution No. 0871.) methiodide monohydrate has been determined. C₂₅H₃₀NO ₄ ⁺ I^–·H₂0, triclinic, P,a=8.831(1)Å, b=10.842(2),c=13.902(2), =105.0(1)^o, =104.7(1), =97.3(1),V=1210.22ų, Z=2,D _x =1.428 g./cm^–3, (CuK)=1.54184Å, (CUK)=107.2 cm^–1, F(000)=544,T=295^oK,R=0.038,Rw=0.046, for 2331 observed reflections withI2(I). Apart from van der Waals forces, the structure is stabilized by two hydrogen bonds of the type Ow(H) ... O and Ow(H) ... I^– involving the water molecule as the donor and atom O4 of the methoxy group and I^– as acceptors.     

Crystal structure of 6-nitrobenzo(a)pyrene

In 6-nitrobenzo(a)pyrene, an environmental pollutant, the nitro substituent lies at 69.5(1) to the mean plane of the aromatic moiety. The C–C bond distances range from 1.341(3) to 1.443(3) Å. The crystal is in the monoclinic space group, P2₁/c, with a = 8.3239(3) Å, b = 8.9530(3) Å, c = 18.0678(5) Å, = 99.264(2) and Z = 4. Molecules are assembled in sheets in the unit cell through stacking and alternating C–H O interactions.     

Distortions in nitramine substituted cubanes: The structures of N,N′-dinitro-1,4-diaminocubane,N,N′-dinitro-N,N′-(2-pyridyl)-1,4-diaminocubane,and 1,2,4,7-tetrakis(N-methoxycarbonylnitramino)cubane

The structures of three nitramine substituted cubane molecules, N,N-dinitro-1,4-diaminocubane (1), N,N-dinitro-N,N-(2-pyridyl)-1,4-diaminocubane (2), and 1,2,4,7-Tetrakis(N-methoxycarbonylnitramino)-cubane (3), have been determined.1 crystallized in the space group P2₁/a with cell dimensionsa=6.545(1),b=9.331(1),c=7.459(1) Å, =105.80(1),2 crystallized in the monoclinic space group P2₁/a with cell dimensionsa=7.545(2),b=8.697(3),c=12.406(4 Å, =96.28(3)°, while3 crystallized in the monoclinic space group P2₁/c with cell dimensionsa=10.866(3),b=6.866(2),c=16.167(6) Å, =108.79(3)°. The metrical parameters of the cubane skeleton showed no significant deviations from those found in other similarly substituted cubane molecules. For2 and3 there were considerable distortions of the nitramine moiety from planarity in contrast to1 where the nitramine moiety was almost exactly planar. The bond distances and angles for the nitramine group in1 indicates a substantial introduction of double bond character into the N–N bond in1, achieved by delocalization of the amine lone pair, compared with2 and3.     

Synthesis,structure and fluorescent property of a novel inorganic–organic zinc compound

Single crystals of a symmetrically substituted molecule, [Zn(C₃N₆H₆)(H₂O)_0.5Cl₂] (C₃N₆H₆)(H₂O)(1), have been obtained. The crystal structure of 1 shows the existence of novel layered type supramolecular structure constructed by dumbbell-shape coordinated Zn moleculeand one 2,4,6-triamine-s-triazine ligand. Crystallographic data for 1: monoclinic system, space group: C2/c, a = 12.2532(9), b = 13.8606(10), c = 18.3603(13) Å, = 99.7860(10), V = 3072.9(4) ų and Z = 8, D_c = 1.758 Mg/m³, R₁ = 0.0518. The fluorescent property of 1 has also been studied. The luminescent property of 1 attributable to both ligand ^* transitions and electronic transfer of Zn^II O transitions.     

Crystal structure of tetrahydrocortisol

The crystal structure of tetrahydrocortisol (3, 11, 17,21-tetrahydroxy-5-pregnan-20-one), C₂₁H₃₄O₅, has been determined by X-ray diffraction using CuK radiation. The crystals are orthorhombic, P2₁2₁2₁ witha=7.696(5),b=10.227(2),c=23.688(5) Å and Z=4. The structure was solved by direct methods and refined to a finalR-value of 0.053 with 1714 observed reflections. The rings A, B, C, D arecis, trans, andtrans fused, respectively. The rings, A, B, C, have almost perfect chair conformations and D has a distorted envelope conformation. The steroid skeleton as a whole is somewhat convex toward the -side. The molecules are held together by a three-dimensional network of hydrogen bonds. Despite the similar cell constants and common space group of the title compound with cortisone and 17-hydroxyprogesterone, they are not isostructural.     

Crystal structure ofcatena-O,O′-diethylphosphonoacetatotriphenyltin

Triphenyltin diethylphosphonoacetate, which crystallizes in the monoclinc space groupP2₁/c (a=15.154(4),b=9.159(3),c=17.685(4) Å, =91.410(8)°), adopts a polymeric structure in which planar triphenyltin cations (_C—Sn—C=357.3(6)°) are axially linked by the diethylphosphonoacetato anions (Sn–O_esteryl=2.129(3), SnO_phosphoryl=2.420(3) Å; O–SnO=171.9(1)° into chains that propagate by translations along theb-axis. The structure has been erfined toR=0.037 for 3384I3(I) reflections.     

Synthesis and X-ray crystal structure of three polyazamacrocycles having sulfonate pendant groups: Piperazinyl-monomethanesulfonic acid,sodium hydrogen 1,4,7-triazacyclononane-N,N′-di(methanesulfonate) and 1,4,7,10-tetraazacyclododecane-N,N′-di(methanesulfonic acid)

C₅H₁₀N₂O₃S,1, monoclinicC2/c,a=17.545(5),b=6.822(8),c=13.928(2),=108.36(7),Z=8, MoK, =0.7107 Å,=3.56cm^–1,R=0.061,R _w =0.099. C₈H₁₆N₃O₆S₂Na·2H₂O,2, orthorhombicPna2₁,a=17.964(8),b=10.157(1),c=8.263(4),Z=4, MoK, =0.7107 Å,=4.07 cm^–1,R=0.040,R _w =0.043. C₁₀H₂₀N₄O₆S₂·2H₂O,3, monoclinicP2₁/n,a=9.142(9),b=13.576(7),c=14.028(8),=94.096(8),Z=4, MoK, =0.7107 Å,=3.37 cm^–1,R=0.063,R _w =0.074. Compounds1, 2, and3 were prepared from the pH-dependent sulfomethylation of the di- and polyazamacrocycles.     

Crystal structures of two allotropic forms of Na2CoP2O7

Na₂CoP₂O₇ may be prepared in two allotropie forms:I, rose,M _r =278.85, triclinic, P1,a=9.735(2),b=10.940(3),c=12.289(4) Å,=148.78,=121.76(1), =68.38(2)°,V=566.8(2) ų,Z=4,D _meas=3.28(5) g cm^–3,D _calc=3.267 g cm^–3, (MoK)=0.71069 Å,=37.12 cm^–1, F(000)=540,T=298 K,R=5.4% for 2911 observed reflections; andII, blue,M _r =278.85, orthorhombic, P2₁cn,a=7.713(2) Å,b=10.271(4),c=15.378(6)°,V=1218.2(8) ų,Z=8,D _meas=3.06(5) g cm^–3,D _calc=3.040 g cm^–1, (MoK ) Å,=34.55 cm^–1, F(000)=1080,T=298 K,R=9.9% for 1450 observed reflections. Cobalt displays octahedral coordination to six oxygen atoms in the rose form whereas the metal coordination is tetrahedral in the blue form.     

Dinuclear complex of rhodium(III) with an amine-phenol ligand: synthesis and X-ray crystal structure

A new rhodium(III) complex of an amine-phenol ligand N,NN-bis-(2-hydroxybenzyl)1,3-diaminopropane was synthesized and characterized by X-ray diffraction studies. Diffraction data were collected by the-2 scan method using MoK. radiation. The structure was solved by conventional methods resulting in a final R factor of 0.037 for 1954 independent reflections (F _o >2(F _o )). The structure consists of a dinuclear complex with two -hydroxy bridges between the two Rh atoms. The overall charge of the molecule is neutral due to deprotonation of all phenolic groups. Crystal data: triclinic, space groupP¯1,a=7.308(3)Å;b=9.586(3)Å,c=12.686(5)Å, =87.51(2), =88.28(2), =71.70(3)°,V=866.6(6)ų;Z=2.     

Crystal and molecular structure of 1,1′,3,3′-tetraphenyloxaldiamidrazone

1,1,3,3-Tetraphenyloxaldiamidrazone, C₂₆H₂₄N₆, crystallizes in the monoclinic system: space groupP2₁/c,a= 13.946(1) Å,b= 5.706(1) Å,c= 17.109(1) Å, = 125.31(1) °,D _m = 1.254,D _c = 1.259 gcm^–3 andZ= 2. Intensities were obtained from –2 scans with a Syntex automated diffractometer using graphite-monochromated MoK radiation. The structure was solved by direct methods. Full-matrix least-squares refinement of all positional and thermal (anisotropic for the nonhydrogen atoms and isotropic for the hydrogen atoms) parameters using 2022 reflections [I>2(itI)] converged at a conventionalR of 0.041. The molecule is characterized by a conjugated pi system which includes the central N=C–C=N moiety and two of the four aniline groups. No intermolecular and only weak intramolecular hydrogen bonds are present.     

Synthesis and crystal structure of 1-(1′,3′-dimethyl-5′-chloropyrazol-4′-carbonyl′-3-(2′-chlorophenyl)-5-amino-4-cyanopyrazole

The title compound 1-(1,3-dimethyl-5-chloropyrazol-4-carbonyl)-3-(2-chlorophenyl)-5-amino-4-cyanopyrazole (C₁₆H₁₂Cl₂N₆O) has been synthesized and characterized by X-ray diffraction: Triclinic, space group P1, with a = 8.6712(8) Å, b = 9.5091(10) Å, c = 11.2170(11) Å = 71.531(2)°, = 84.683(2)°, = 74.099(2)° Z = 2; V = 843.7(14) ų. C(10), O(1), C(11), and N(2) atoms are coplanar with the average deviation of 0.0071 Å, which form 11.03° and 43.93° dihedral angles with pyrazole planes (I) and (II), respectively.     

Crystal structures of twoN-substituted 2-thioxo-1,3-dithiole-4-carboxamides

The two closely related compoundsN,N-dimethyl 5-(methylthio)-2-thioxo-1,3-dithiole-4-carboxamide1 andN-(p-methoxy-phenyl)-N-methyl 5-(methylthio)-2-thioxo-1,3-dithiole-4-carboxamide2 have been characterized by X-ray crystal structure determination. Crystal data for1: triclinic, ,a=6.767(1),b=12.594(2),c=6.648(1) Å, =101.38(1), =93.37(2), =79.62(1)°,V=546.2 ų,Z=2. Crystal data for2: monoclinic, Cc,a=19.836(4),b=6.057(1),c=15.860(3) Å, =127.61(3)°,V=1509.5ų,Z=4. The molecular structures of1 and2 show remarkable differences concerning the conformational behavior. These differences are related to the nature of the substituents at the nitrogen atom. The presence of an aromatic system in2 leads to an almost planar arrangement of the -oxoketene dithioacetal moiety. This effect is accompanied by a short intramolecular S...O contact of 2.648(2) Å. In the absence of an aromatic system, as is the case for compound1, neither a resonance effect along the -oxoketene dithioacetal fragment nor a short S...O distance is observed.     

Structures of 8α-(2′-methylbutyryloxy)-9α-hydroxymontahibisciolide,a new skeletal type of sesquiterpene lactone,and of its precursor 8α-isobutyryloxy-9-oxo-germacra-4E, 1(10)Z-dien-6β,12-olide

The structures of a new skeletal type of sesquiterpene lactone, containing a seven, five, fivering system, and of its putative precursor, a 9-oxo-melampolide, have been confirmed by single crystal X-ray structure determination. The central 5-membered ring of the new skeleton istrans-fused to the cycloheptene ring andcis-fused to the lactone ring. Transannular interactions and the geometry of thetrans carbon-carbon double bond of the oxo-melampolide and the keto-group at C9, suggest that the new seven, five, five tricyclic skeleton-type of montahibisciolide can easily be reached by a transannular cyclization process. The isobutyrloxy group of the oxo-melampolide is disordered into two partially populated conformations. 8-(2-Methylbutyryloxy)-9-hydroxymontahibisciolide,3, C₂₀H₂₈O₅, crystallizes in orthorhombic space groupP2₁2₁2₁ witha=8.294(2),b=9.740(2),c=22.675(1) Å,V=1832(1)ų,Z=4. The structure was refined toR=0.043 andR _w=0.048 for 2898 observed reflections with CuK radiation. 8-isobutyryloxy-9-oxo-germacra-4E, 1(10)Z-dien-6, 12-olide,4, C₁₉H₂₄O₅, crystallizes in monoclinic space groupC2 witha=32.879(7),b=5.793(2),c=9.884(4)Å, =99.01(3)°,V=1859.5(9)å³,Z=4. The structure was refined toR=0.054 andR _w=0.064 for 1010 observed reflections with MoK radiation.     

Crystal structure of 751-1751-1751-1751-2751-2751-2

The title compound crystallizes in the centrosymmetric triclinic space group (No. 2) witha=10.818(1)Å,b=10.876(1)Å,c=11.072(2)Å, =98.74(1)°, =98.83(1)°, =96.61(1)°,V=125906(3)ų andZ=2. Interatomic distances include Fe–P=2.243(2)Å, Fe–CO=1.771(6)–1.781(5)Å, Fe–C(C₅H₅)=2.074(6)–2.103(5)Å and P–F=1.511(6)–1.571(4)Å.     

Short H· · ·H distances in norbornene derivatives

A short H···H intramolecular interaction was reported previously for an anhydride of syn-sesquinorbornene. The synthesis and structure of a such an anhydride with an additional five-membered dithiole ring has been investigated. While hydrogen atom positions are not accurately located, the 1.62 Å separation indicates this molecule is a candidate for the shortest H···H interaction. Two cycloadducts of norbornadiene, which literature suggests might exhibit additional short interactions, are reported also; however, the isomers with minimal intramolecular interactions are the isolated products. C₂₂H₂₀O₃S₂, 3, crystallizes in P with a = 10.881(4), b = 13.712(8), C = 6.548(8) Å, = 101.32(6), = 107.49(5), = 90.49(4)°, D _calc = 1.445 g cm^–3, and Z = 2, C₂₁H₂₀O₄Cl₈, 5, in P2₁/n with a = 8.168(2), b = 13.488(4), c = 23.500(6) Å, = 94.72(2)°, D _calc = 1.597 g cm^–3, and Z = 4, C₂₁H₂₈O₄, 6, in P> with a = 12.667(2), b = 12.792(2), c = 12.540(2) Å, = 113.51(1), = 98.18(1), = 74.39(1)°, D _calc = 1.276 g cm^–3, and Z = 4.     

Crystal and molecular structure of (exo)-1-methoxycarbonyl-5-ethoxycarbonyl-4, 5,6,11b-tetrahydroisoxazolidino-[2,3-a]-β-carboline,C18H20N2O5

The structure of the title compound, C₁₈H₂₀N₂O₅, was determined by X-rays atT=290 K.M _r =344.366, orthprombic, space groupP2₁2₁2₁,a=9.350(5),b=11.954(2),c=15.455(3) Å,V _c =1727.3 ų,Z=4,D _c =1.324 Mg m^–3. CuK. radiation (graphite crystal monochromator, =1.54178 Å),(CuK)=7.70 cm^–1. Final conventionalR-factor=0.065,R _w =0.086 for 2887 observed reflections and 265 variables. The structure was solved usingMultan.     

Crystal structure and low-temperature emission of [(dmp)Cu(μ-S2butphos)2Cu(dmp)][BF4]2·6CH2Cl2 (dmp=2,9-dimethyl-1,10-phenanthroline; S2butphos=1,4-bis(diphenylphosphinesulfido)butane)

The synthesis and crystal structure of a bimetallic luminescent Cu(I) complex containing 1,4-bis(diphenylphosphinesulfido)butane and the -diimine 2,9-dimethyl-1,10-phenanthroline (dmp) is described. The coordination geometry about the Cu(I) center is pseudo-tetrahedral. Interplanar interactions between phenyl groups on the phosphine sulfide ligands and the phenanthroline exist which are indicative ofintramolecular -stacking, leading to compressed S–Cu–S bond angles. The complex displays emission from a single metal-centered charge-transfer state at 77 K in a 41 ethanol/methanol (v/v) glass. This is in contrast to the triphenylphosphine complex, which exhibits dual luminescence from a charge-transfer and an intraligand state at 77 K. Crystal data: triclinic, ,a=13.619(4) Å,b=13.673(2) Å,c=15.384(2) Å, =75.08(1)°, =80.35(2)°, =80.67(2)°.     

Crystal structures of 3,5,5′-trichloro-2,2′-bithiophene and 3,3′,5,5′-tetrachloro-2,2′-bithiophene

The crystal structures of 3,5,5-trichloro-2,2-bithiophene (I) and 3,3,5,5-tetrachloro-2,2-bithiophene (II) have been determined by single crystal X-ray diffraction techniques. BothI andII crystallize in the monoclinic crystal system. ForI,a=3.895(2),b=11.928(2),c=10.701(2)Å,=97.70(1)°, space groupP2₁,Z=2 and forII,a=8.942(2),b=3.900(2),c=15.180(2)Å,=92.30(1)°, space groupP2₁/n,Z=2. The structures have been solved by direct methods and all nonhydrogen atoms refined with anisotropic thermal parameters. ForI the final residual is 0.035 (all 1185 independent reflections, MoK radiation) and forII, 0.034 (all 1209 independent reflections, MoK radiation). BothI andII have theanti conformation butI has a torsion angle of 3.4(5)° between the two thiophene rings whileII is completely planar.