Complex Networks: from Graph Theory to Biology

The aim of this text is to show the central role played by networks in complex system science. A remarkable feature of network studies is to lie at the crossroads of different disciplines, from mathematics (graph theory, combinatorics, probability theory) to physics (statistical physics of networks) to computer science (network generating algorithms, combinatorial optimization) to biological issues (regulatory networks). New paradigms recently appeared, like that of ‘scale-free networks’ providing an alternative to the random graph model introduced long ago by Erdös and Renyi. With the notion of statistical ensemble and methods originally introduced for percolation networks, statistical physics is of high relevance to get a deep account of topological and statistical properties of a network. Then their consequences on the dynamics taking place in the network should be investigated. Impact of network theory is huge in all natural sciences, especially in biology with gene networks, metabolic networks, neural networks or food webs. I illustrate this brief overview with a recent work on the influence of network topology on the dynamics of coupled excitable units, and the insights it provides about network emerging features, robustness of network behaviors, and the notion of static or dynamic motif.     

具有非均匀传输和抗攻击差异的网络病毒传播模型

针对实际网络中节点存在抗攻击差异以及边的非均匀传输等情况,基于平均场理论,提出具有抗攻击差异和非均匀传输特性的网络病毒传播平均场SIR模型.该模型中,通过引入脆弱性函数和传输函数,分别描述节点的抗攻击差异以及边的非均匀传输能力.通过对所提模型的分析,得到传播阈值的理论结果.理论分析和仿真表明,节点的抗攻击差异以及边的非均匀传输,都可导致出现正的传播阈值,使得病毒传播风险有效降低.     

Novel Convolutional Neural Network with Variational Information Bottleneck for P300 Detection

In the area of brain-computer interfaces (BCI), the detection of P300 is a very important technique and has a lot of applications. Although this problem has been studied for decades, it is still a tough problem in electroencephalography (EEG) signal processing owing to its high dimension features and low signal-to-noise ratio (SNR). Recently, neural networks, like conventional neural networks (CNN), has shown excellent performance on many applications. However, standard convolutional neural networks suffer from performance degradation on dealing with noisy data or data with too many redundant information. In this paper, we proposed a novel convolutional neural network with variational information bottleneck for P300 detection. Wiht the CNN architecture and information bottleneck, the proposed network termed P300-VIB-Net could remove the redundant information in data effectively. The experimental results on BCI competition data sets show that P300-VIB-Net achieves cutting-edge character recognition performance. Furthermore, the proposed model is capable of restricting the flow of irrelevant information adaptively in the network from perspective of information theory. The experimental results show that P300-VIB-Net is a promising tool for P300 detection.     

Complexity in human transportation networks: a comparative analysis of worldwide air transportation and global cargo-ship movements

We present a comparative network-theoretic analysis of the two largest global transportation networks: the worldwide air-transportation network (WAN) and the global cargo-ship network (GCSN). We show that both networks exhibit surprising statistical similarities despite significant differences in topology and connectivity. Both networks exhibit a discontinuity in node and link betweenness distributions which implies that these networks naturally segregate into two different classes of nodes and links. We introduce a technique based on effective distances, shortest paths and shortest path trees for strongly weighted symmetric networks and show that in a shortest path tree representation the most significant features of both networks can be readily seen. We show that effective shortest path distance, unlike conventional geographic distance measures, strongly correlates with node centrality measures. Using the new technique we show that network resilience can be investigated more precisely than with contemporary techniques that are based on percolation theory. We extract a functional relationship between node characteristics and resilience to network disruption. Finally we discuss the results, their implications and conclude that dynamic processes that evolve on both networks are expected to share universal dynamic characteristics.     

A Fault Diagnosis Method Considering Meteorological Factors for Transmission Networks Based on P Systems

Bad meteorological conditions may reduce the reliability of power communication equipment, which can increase the distortion possibility of fault information in the communication process, hence raising its uncertainty and incompleteness. To address the issue, this paper proposes a fault diagnosis method for transmission networks considering meteorological factors. Firstly, a spiking neural P system considering a meteorological living environment and its matrix reasoning algorithm are designed. Secondly, based on the topology structure of the target power transmission network and the action logic of its protection devices, a diagnosis model based on the spiking neural P system considering the meteorological living environment is built for each suspicious fault transmission line. Following this, the action messages of protection devices and corresponding temporal order information are used to obtain initial pulse values of input neurons of the diagnosis model, which are then modified with the gray fuzzy theory. Finally, the matrix reasoning algorithm of each model is executed in a parallel manner to obtain diagnosis results. Experiment results achieved out on IEEE 39-bus system show the feasibility and effectiveness of the proposed method.     

Percolation on networks with dependence links

As a classical model of statistical physics, the percolation theory provides a powerful approach to analyze the network structure and dynamics. Recently, to model the relations among interacting agents beyond the connection of the networked system, the concept of dependence link is proposed to represent the dependence relationship of agents. These studies suggest that the percolation properties of these networks differ greatly from those of the ordinary networks. In particular,unlike the well known continuous transition on the ordinary networks, the percolation transitions on these networks are discontinuous. Moreover, these networks are more fragile for a broader degree distribution, which is opposite to the famous results for the ordinary networks. In this article, we give a summary of the theoretical approaches to study the percolation process on networks with inter- and inner-dependence links, and review the recent advances in this field, focusing on the topology and robustness of such networks.     

节点抗攻击存在差异的无尺度网络恶意软件传播研究

在考虑节点抗攻击能力存在差异情形下,研究了恶意软件在无尺度网络中的传播行为.基于元胞自动机理论,建立了节点具有攻击差异的恶意软件传播模型.通过定义脆弱性函数,以描述不同度节点的抗攻击差异,使得模型更具普遍性.研究了不同形式的脆弱性函数对恶意软件在无尺度网络中的传播临界值和时间演化的影响.研究表明,节点抗攻击能力的差异对传播行为会产生重要影响,如导致传播临界值改变、传播速度减缓.研究指出,脆弱性函数是网络选择适合的免疫策略的重要依据.     

模拟复杂网络下子网络节点抗攻击设计

针对复杂网络节点受攻击而出现的安全性问题,提出在模拟复杂网络基础上结合Feistel算法的子网络节点抵抗攻击方法。该方法通过子网络节点定位参数集,建立恶意节点位置模型,并确定定位真实精度;而后利用Feistel算法对节点密文进行加密处理,进而使加密信息恢复成明文信息,完成模拟复杂网络下子网络节点的抗攻击方法改进。结果证明,该方法不仅能够准确的对恶意节点进行定位,而且增强了节点抗攻击性能,提升了网络安全性。     

Spreading processes on dynamically changing contact networks

We develop and analyze an agent-based model for the study of information propagation in dynamic contact networks. We represent information as a state of a node in a network that can be probabilistically transferred to an adjacent node within a single time step. The model is based on a closed (yet sufficiently large) population that can support processes of link generation and annihilation using different contact regimes. Our study is confined to the case of homogeneous contacts, where each agent establishes and breaks contacts in the same way. We consider information to be available for spreading in a fixed time window (i.e. finite memory). We find, surprisingly, that information transmission (measured as the proportion of informed nodes after a fixed number of time steps) is identical for dynamic preferential and random networks, but radically different for the associate mixing contact regime. We also find that the probability of transmission is, similarly counterintuitively, not a main driver of the process as opposed the the main network par maters determining contact lifetime and the turnover rate on connections. We discuss the explanation and the significance of these results in the light of the fundamental difference between dynamic and static (cumulative) networks.     

Bootstrap Percolation in Living Neural Networks

Recent experimental studies of living neural networks reveal that their global activation induced by electrical stimulation can be explained using the concept of bootstrap percolation on a directed random network. The experiment consists in activating externally an initial random fraction of the neurons and observe the process of firing until its equilibrium. The final portion of neurons that are active depends in a non linear way on the initial fraction. The main result of this paper is a theorem which enables us to find the final proportion of the fired neurons, in the asymptotic case, in the case of random directed graphs with given node degrees as the model for interacting network. This gives a rigorous mathematical proof of a phenomena observed by physicists in neural networks.     

Modeling wireless sensor networks using random graph theory

A critical issue in wireless sensor networks (WSNs) is represented by limited availability of energy within network nodes. Therefore, making good use of energy is necessary in modeling sensor networks. In this paper we proposed a new model of WSNs on a two-dimensional plane using site percolation model, a kind of random graph in which edges are formed only between neighbouring nodes. Then we investigated WSNs connectivity and energy consumption at percolation threshold when a so-called phase transition phenomena happen. Furthermore, we proposed an algorithm to improve the model; as a result the lifetime of networks is prolonged. We analyzed the energy consumption with Markov process and applied these results to simulation.     

Connectivity and percolation behaviour of grain boundary networks in three dimensions

Grain boundary networks are subject to crystallographic constraints at both triple junctions (first-order constraints) and quadruple nodes (second-order constraints). First-order constraints are known to influence the connectivity and percolation behaviour in two-dimensional grain boundary networks, and here we extend these considerations to fully three-dimensional microstructures. Defining a quadruple node distribution (QND) to quantify both the composition and isomerism of quadruple nodes, we explore how the QNDs for crystallographically consistent networks differ from that expected in a randomly assembled network. Configurational entropy is used to quantify the relative strength of each type of constraint (i.e., first- and second-order), with first-order triple junction constraints accounting for at least 75% of the non-random correlations in the network. As the dominant effects of constraint are captured by considering the triple junctions alone, a new analytical model is presented which allows the 3-D network connectivity to be estimated from data on 2-D microstructural sections. Finally, we show that the percolation thresholds for 3-D crystallographically consistent networks differ by as much as ±0.07 from those of standard percolation theory.     

基于移动社交网络的谣言传播动力学研究

本文在CSR传播模型的基础上提出基于移动社交网络的CSR的谣言传播模型. 改进了CSR模型的传播规则和传播动力学方程, 使得更符合移动SNS上用户的使用习惯. 在CSR模型中的接受概率数学模型基础上, 考虑个人接受阈值对接受概率的影响, 更符合人类接受谣言的心理学特点. 本文对该传播模型进行了理论分析. 并在仿真实验中, 利用多agent仿真平台对新模型和CSR模型以及SIR模型 在匀质网络和异质网络中的传播效果进行了对比研究, 从实验的结果来看, 新的谣言传播模型在匀质网络中传播范围更广, 传播速度更快. 新模型具有初值敏感性的特点. 关键词： 复杂网络 移动社交网络 谣言传播     

磁刺激穴位复杂脑功能网络构建与分析

本文采用互信息方法对磁刺激内关穴过程中的脑电信 号进行了两两通道间非线性时域关联特性分析, 构建了不同频率刺激前、刺激中、刺激后的脑功能网络, 并基于复杂网络理论对脑功能网络的特征进行了深入研究. 结果表明, 磁刺激频率为3 Hz 时, 大脑功能网络的平均度、平均聚类系数和全局效率与刺激前相比均有显著升高, 平均路径长度显著降低, 并且相应脑功能网络的"小世界"属性有所增强, 信息在大脑各区域间的传递更加高效. 本研究首次开展了磁刺激穴位复杂脑功能网络的构建与分析, 为探索磁刺激穴位对大脑神经调节的作用和机理提供新思路和新方法. 关键词： 复杂网络 磁刺激 脑功能网络 互信息     

Robustness of a network of networks

Network research has been focused on studying the properties of a single isolated network, which rarely exists. We develop a general analytical framework for studying percolation of n interdependent networks. We illustrate our analytical solutions for three examples: (i) For any tree of n fully dependent Erd?s-Rényi (ER) networks, each of average degree k, we find that the giant component is P∞ =p[1-exp(-kP∞)](n) where 1-p is the initial fraction of removed nodes. This general result coincides for n = 1 with the known second-order phase transition for a single network. For any n>1 cascading failures occur and the percolation becomes an abrupt first-order transition. (ii) For a starlike network of n partially interdependent ER networks, P∞ depends also on the topology-in contrast to case (i). (iii) For a looplike network formed by n partially dependent ER networks, P∞ is independent of n.     

Complex network analysis in inclined oil--water two-phase flow

Complex networks have established themselves in recent years as being particularly suitable and flexible for representing and modelling many complex natural and artificial systems. Oil--water two-phase flow is one of the most complex systems. In this paper, we use complex networks to study the inclined oil--water two-phase flow. Two different complex network construction methods are proposed to build two types of networks, i.e. the flow pattern complex network (FPCN) and fluid dynamic complex network (FDCN). Through detecting the community structure of FPCN by the community-detection algorithm based on K-means clustering, useful and interesting results are found which can be used for identifying three inclined oil--water flow patterns. To investigate the dynamic characteristics of the inclined oil--water two-phase flow, we construct 48 FDCNs under different flow conditions, and find that the power-law exponent and the network information entropy, which are sensitive to the flow pattern transition, can both characterize the nonlinear dynamics of the inclined oil--water two-phase flow. In this paper, from a new perspective, we not only introduce a complex network theory into the study of the oil--water two-phase flow but also indicate that the complex network may be a powerful tool for exploring nonlinear time series in practice.     

一种新型广义RBF神经网络在混沌时间序列预测中的研究

提出了一种新颖的广义径向基函数神经网络模型,其径向基函数(RBF)的形式由生成函数确定.然后,给出了易实现的梯度学习算法,同时为了进一步提高网络的收敛速度和网络性能,又给出了基于卡尔曼滤波的动态学习算法.为了验证网络的学习性能，采用基于卡尔曼滤波算法的新型广义RBF网络预测模型对Mackey-Glass混沌时间序列和Henon映射进行了仿真.结果表明,所提出的新型广义RBF神经网络模型能快速、精确地预测混沌时间序列,是研究复杂非线性动力系统辨识和控制的一种有效方法. 关键词： 广义径向基函数神经网络 卡尔曼滤波 梯度下降学习算法 混沌时间序列 预测     

二分网上的靴襻渗流

靴襻渗流最早应用于统计物理学中研究磁铁因非磁性杂质导致磁有序的降低并最终消失的现象. 随着复杂网络研究的深入, 许多学者展开网络上的靴襻渗流研究. 在自然界中, 许多系统自然呈现出二分结构, 二分网络是复杂网络中的一种重要的网络模式. 本文通过建立动力学方程和计算机仿真模拟的方法研究二分网上的靴襻渗流, 关注的参数是二分网中两类节点初始的活跃比例和活跃阈值, 分别用f₁, f₂和Ω₁, Ω₂表示, 得到二分网两类节点终态活跃比例随初始活跃比例的变化会发生相变等结论. 同时 验证了动力学方程与仿真模拟的一致性.     

Impurity diffusion in a harmonic potential and nonhomogeneous temperature

Classical blockmodel is known as the simplest among models of networks with community structure. The model can be also seen as an extremely simply example of interconnected networks. For this reason, it is surprising that the percolation transition in the classical blockmodel has not been examined so far, although the phenomenon has been studied in a variety of much more complicated models of interconnected and multiplex networks. In this paper we derive the self-consistent equation for the size the global percolation cluster in the classical blockmodel. We also find the condition for percolation threshold which characterizes the emergence of the giant component. We show that the discussed percolation phenomenon may cause unexpected problems in a simple optimization process of the multilevel network construction. Numerical simulations confirm the correctness of our theoretical derivations.     

Robustness of Complex Networks under Attack and Repair

To study the robustness of complex networks under attack and repair, we introduce a repair model of complex networks. Based on the model, we introduce two new quantities, i.e. attack fraction fa and the maximum degree of the nodes that have never been attacked ~Ka, to study analytically the critical attack fraction and the relative size of the giant component of complex networks under attack and repair, using the method of generating function. We show analytically and numerically that the repair strategy significantly enhances the robustness of the scale-free network and the effect of robustness improvement is better for the scale-free networks with a smaller degree exponent. We discuss the application of our theory in relation to the
understanding of robustness of complex networks with reparability.