Cascade defense via navigation in scale free networks

In this paper, we investigate cascade defense and control in scale free networks via navigation strategy. It is found that with an appropriate parameter a, which is tunable in controlling the effect of degree in the navigation strategy, one can reduce the risk of cascade break down. By checking the distribution of efficient betweenness centrality (EBC) and the average EBC of vertices with degree k, the validity can be guaranteed. Despite the advantage of cascade defense, the degree based navigation strategy may also lead to lower network efficiency. To avoid this disadvantage, we propose a new navigation strategy. Importantly and interestingly, the new strategy can defend cascade break down effectively even without reducing the network efficiency. Distribution of the EBC and EBC-degree correlation of the new strategy are also investigated to explain the effectiveness in cascade defense.     

Modeling network growth with assortative mixing

We propose a model of an underlying mechanism responsible for the formation of assortative mixing in networks between “similar” nodes or vertices based on generic vertex properties. Existing models focus on a particular type of assortative mixing, such as mixing by vertex degree, or present methods of generating a network with certain properties, rather than modeling a mechanism driving assortative mixing during network growth. The motivation is to model assortative mixing by non-topological vertex properties, and the influence of these non-topological properties on network topology. The model is studied in detail for discrete and hierarchical vertex properties, and we use simulations to study the topology of resulting networks. We show that assortative mixing by generic properties directly drives the formation of community structure beyond a threshold assortativity of r ∼0.5, which in turn influences other topological properties. This direct relationship is demonstrated by introducing a new measure to characterise the correlation between assortative mixing and community structure in a network. Additionally, we introduce a novel type of assortative mixing in systems with hierarchical vertex properties, from which a hierarchical community structure is found to result. Electronic supplementary material Supplementary Online Material     

Duplication： a Mechanism Producing Disassortative Mixing Networks in Biology

Assortative/disassortative mixing is an important topological property of a network. A network is called assortative mixing if the nodes in the network tend to connect to their connectivity peers, or disassortative mixing if nodes with low degrees are more likely to connect with high-degree nodes. We have known that biological networks such as protein-protein interaction networks （PPI）, gene regulatory networks, and metabolic networks tend to be disassortative. On the other hand, in biological evolution, duplication and divergence are two fundamental processes. In order to make the relationship between the property of disassortative mixing and the two basic biological principles clear and to study the cause of the disassortative mixing property in biological networks, we present a random duplication model and an anti-preference duplication model. Our results show that disassortative mixing networks can be obtained by both kinds of models from uncorrelated initial networks. Moreover, with the growth of the network size, the disassortative mixing property becomes more obvious.     

Networks that optimize a trade-off between efficiency and dynamical resilience

In this Letter we study networks that have been optimized to realize a trade-off between communication efficiency and dynamical resilience. While the first is related to the average shortest pathlength, we argue that the second can be measured by the largest eigenvalue of the adjacency matrix of the network. Best efficiency is realized in star-like configurations, while enhanced resilience is related to the avoidance of short loops and degree homogeneity. Thus crucially, very efficient networks are not resilient while very resilient networks lack in efficiency. Networks that realize a trade-off between both limiting cases exhibit core-periphery structures, where the average degree of core nodes decreases but core size increases as the weight is gradually shifted from a strong requirement for efficiency and limited resilience towards a smaller requirement for efficiency and a strong demand for resilience. We argue that both, efficiency and resilience are important requirements for network design and highlight how networks can be constructed that allow for both.     

Cascading Failures of Complex Networks Based on Two-Step Degree

We propose a new concept, two-step degree. Defining it as the capacity of a node of complex networks, we establish a novel capacity-load model of cascading failures of complex networks where the capacity of nodes decreases during the process of cascading failures. For scale-free networks, we find that the average two-step degree increases with the increase of the heterogeneity of the degree distribution, showing that the average two- step degree can be used for measuring the heterogeneity of the degree distribution of complex networks. In addition, under the condition that the average degree of a node is given, we can design a scale-free network with the optimal robustness to random failures by maximizing the average two-step degree.     

Traffic dynamics based on a traffic awareness routing strategy on scale-free networks

By incorporating local traffic information into the shortest path routing strategy, we numerically investigate the effectiveness of the traffic awareness routing strategy for scale-free networks with different clustering. In order to characterize the efficiency of the packet-delivery process, we introduce an order parameter and an average transmission time that allow us to measure the network capacity by the critical value of phase transition from free flow to congestion. Compared with the shortest path routing protocol, the network capacity is greatly enhanced by the traffic awareness routing strategy. We also find that there exists an optimum value for the tunable parameter in the congestion awareness strategy. Moreover, simulation results show that the more clustered the network, the less efficient the packet-delivery process.     

An empirical study of Chinese language networks

Chinese is spoken by the largest number of people in the world, and it is regarded as one of the most important languages. In this paper, we explore the statistical properties of Chinese language networks (CLNs) within the framework of complex network theory. Based on one of the largest Chinese corpora, i.e. People’s Daily Corpus, we construct two networks (CLN1 and CLN2) from two different respects, with Chinese words as nodes. In CLN1, a link between two nodes exists if they appear next to each other in at least one sentence; in CLN2, a link represents that two nodes appear simultaneously in a sentence. We show that both networks exhibit small-world effect, scale-free structure, hierarchical organization and disassortative mixing. These results indicate that in many topological aspects Chinese language shapes complex networks with organizing principles similar to other previously studied language systems, which shows that different languages may have some common characteristics in their evolution processes. We believe that our research may shed some new light into the Chinese language and find some potentially significant implications.     

Immunization of susceptible-infected model on scale-free networks

In this paper, we investigate two major immunization strategies, random immunization and targeted immunization, of the susceptible-infected (SI) model on the Barabási-Albert (BA) networks. For the heterogeneous structure, the random strategy is quite ineffective if the vaccinated proportion is small, while the targeted one which prefers to vaccinate the individuals with the largest degree can sharply depress the epidemic spreading even only a tiny fraction of population are vaccinated. The analytical solution is also obtained, which can capture the trend of velocity change vs. the amount of vaccinated population.     

The emergence of scale-free networks with a seceding mechanism

In order to explore further the underlying mechanism of scale-free networks, we study stochastic secession as a mechanism for the creation of complex networks. In this evolution the network growth incorporates the addition of new nodes, the addition of new links between existing nodes, the deleting and rewiring of some existing links, and the stochastic secession of nodes. To random growing networks with preferential attachment, the model yields scale-free behavior for the degree distribution. Furthermore, we obtain an analytical expression of the power-law degree distribution with scaling exponent γ ranging from 1.1 to 9. The analytical expressions are in good agreement with the numerical simulation results.     

Comparison of the small-world topology between anatomical and functional connectivity in the human brain

We applied graph analysis to both anatomical and functional connectivity in the human brain. Anatomical connectivity was acquired from diffusion tensor imaging data by probabilistic fiber tracking, and functional connectivity was extracted from resting-state functional magnetic resonance imaging data by calculating correlation maps of time series. For the same subject, anatomical networks seemed to be disassortative, while functional networks were significantly assortative. Anatomical networks showed higher efficiency and smaller diameters than functional networks. It can be proposed that anatomical connectivity, as a major constraint of functional connectivity, has a relatively stable and efficient structure to support functional connectivity that is more changeable and flexible.     

Cumulative Laws, Team Assembling Mechanisms Determining Network Structure

A number of researching works have shed light on the field of complex networks recently. We investigate a wide range of real-world networks and find several interesting phenomena. Firstly, almost all of these networks evolve by overlapping new small graphs on former networks. Secondly, not only the degree sequence of the mature network follows a power-law distribution, but also the distribution of the cumulative occurrence times during the growing process are revealed to have a heavy tail. Existing network evolving models do not provide interpretation to these phenomena. We suggest a model based on the team assembling mechanism, which is extracted from the growing processes of real-world networks and requires simple parameters, and produces networks exhibiting these properties observed in the present study and in previous works.     

Periodic Wave of Epidemic Spreading in Community Networks

It was reported by Cummings ef al. [Nature 427 （2004） 344] that there are periodic waves in the spatiotemporal data of epidemics. For understanding the mechanism, we study the epidemic spreading on community networks by both the SIS model and the SIRS model. We find that with the increase of infection rate, the number of total infected nodes may be stabilized at a fixed point, oscillatory waves, and periodic cycles. Moreover, the epidemic spreading in the SIS model can be explained by an analytic map.     

Robustness of Complex Networks under Attack and Repair

To study the robustness of complex networks under attack and repair, we introduce a repair model of complex networks. Based on the model, we introduce two new quantities, i.e. attack fraction fa and the maximum degree of the nodes that have never been attacked ~Ka, to study analytically the critical attack fraction and the relative size of the giant component of complex networks under attack and repair, using the method of generating function. We show analytically and numerically that the repair strategy significantly enhances the robustness of the scale-free network and the effect of robustness improvement is better for the scale-free networks with a smaller degree exponent. We discuss the application of our theory in relation to the
understanding of robustness of complex networks with reparability.     

The complexity of Chinese syntactic dependency networks

This paper proposes how to build a syntactic network based on syntactic theory and presents some statistical properties of Chinese syntactic dependency networks based on two Chinese treebanks with different genres. The results show that the two syntactic networks are small-world networks, and their degree distributions obey a power law. The finding, that the two syntactic networks have the same diameter and different average degrees, path lengths, clustering coefficients and power exponents, can be seen as an indicator that complexity theory can work as a means of stylistic study. The paper links the degree of a vertex with a valency of a word, the small world with the minimized average distance of a language, that reinforces the explanations of the findings from linguistics.     

Comparison of immunization strategies in geographical networks

The epidemic spread and immunizations in geographically embedded scale-free (SF) and Watts-Strogatz (WS) networks are numerically investigated. We make a realistic assumption that it takes time which we call the detection time, for a vertex to be identified as infected, and implement two different immunization strategies: one is based on connection neighbors (CN) of the infected vertex with the exact information of the network structure utilized and the other is based on spatial neighbors (SN) with only geographical distances taken into account. We find that the decrease of the detection time is crucial for a successful immunization in general. Simulation results show that for both SF networks and WS networks, the SN strategy always performs better than the CN strategy, especially for more heterogeneous SF networks at long detection time. The observation is verified by checking the number of the infected nodes being immunized. We found that in geographical space, the distance preferences in the network construction process and the geographically decaying infection rate are key factors that make the SN immunization strategy outperforms the CN strategy. It indicates that even in the absence of the full knowledge of network connectivity we can still stop the epidemic spread efficiently only by using geographical information as in the SN strategy, which may have potential applications for preventing the real epidemic spread.     

Transcriptional regulatory network topology from statistics of DNA binding sites

We show that the out-degree distribution of the gene regulation network of the budding yeast, Saccharomyces cerevisiae, can be reproduced to high accuracy from the statistics of TF binding sequences. Our observation suggests a particular microscopic mechanism for the observed universal global topology in these networks. The numerical data and analytical solution of our model disagree with a simple power-law for the experimentally obtained degree distribution in the case of yeast.     

Evolutionary public goods games on scale-free networks with unequal payoff allocation mechanism

In this paper, we bring an unequal payoff allocation mechanism into evolutionary public goods game on scale-free networks and focus on the cooperative behavior of the system. The unequal mechanism can be tuned by one parameter α: if α>0, the hub nodes can use its degree advantage to collect more payoff; if α<0, numerous non-hub nodes will obtain more payoff in a single round game. Simulation results show that the cooperation level has a non-trivial dependence on α. For the small enhancement factor r, the cooperator frequency can be promoted by both negative and positive α. For large r, there exists an optimal α that can obtain the highest cooperation level. Our results may sharpen the understanding of the emergence of cooperation induced by the unequal payoff allocation mechanism.     

Effect of Eliminating Edges on Robustness of Scale-Free Networks under Intentional Attack

We study the robustness of complex networks under edge elimination. We propose three different edge elimination strategies and investigate their effects on the robustness of scale-free networks under intentional attack. We show that deleting a proper fraction of edges connecting hub nodes and hub nodes can enhance the robustness of scale-free networks under intentional attack.     

Adjusting from disjoint to overlapping community detection of complex networks

The investigation of community structures is one of the most important problems in the field of complex networks and has countless applications in different disciplines: biology, computer, social sciences, etc. Many community detection algorithms have been developed in various fields recently. The vast majority of these algorithms only find disjoint communities; however, in many real-world networks communities often overlap to some extent. In this paper, we propose an efficient method for adjusting these classical algorithms to match the requirement for discovering overlapping communities in complex networks, which is based on a local definition of community strength. The method can in principle be applied with any clustering algorithm. Tests on a set of computer generated and real-world networks give excellent results. In particular, we show that the method can also allow one to availably analyze the problem of unstable nodes in community detection, which is very helpful for understanding the structural properties of the networks correctly and comprehensively.