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1.
使用MP2方法研究了N-H…O=C氢键二聚体的氢键强度,探讨了不同取代基对N-H…O=C氢键强度的影响.研究发现,可以通过改变取代基的供电性或吸电性来调控氢键强度:乙基等供电子基团对N-H…=C氢键强度的调节作用不大;-NO_2等强吸电子基团可极大地改变N-H…=C氢键强度;质子受体分子中的强吸电子基团如-NO_2可使N-H…O=C氢键强度减弱多达2.6 kcal/mol.自然键轨道(NBO)分析表明,N-H…O=C氢键强度越强,参与形成氢键的氢原子电荷越正,氧原子电荷越负,单体分子间电荷转移越多,N-H…O=C氢键中氧原子孤对电子n(O)对N-H反键轨道σ*(N-H)的二阶稳定化能越大.  相似文献   

2.
HOX(X=F,Cl)二聚体红移氢键的理论研究   总被引:1,自引:1,他引:0       下载免费PDF全文
用理论方法研究了二聚体HOX(X=F,Cl)分子间氢键,在B3LYP/6-31+G(d,p)、 B3LYP/6-311++G(d,p)、MP2/6-31+G(d,p)和MP2/6-311++G(d,p)水平上,利用标准方法和均衡校正方法对二聚体进行了几何优化、振动频率和相互作用能的计算。同时,利用电子密度拓扑分析和自然键轨道分析对红移氢键的本质进行了分析。研究表明:分子间O—H…O和O—H…X(X=F,Cl)氢键的形成使二聚体中O—H键伸长,伸缩振动频率减小,形成红移氢键。NBO分析表明,电荷转移效应占优势,因此形成O—H…O和O—H…X(F,Cl)红移氢键。  相似文献   

3.
采用密度泛函B3LYP(Becke, three-parameter, Lee-Yang-Parr)量子化学理论方法探讨了同时基于氢键和卤键者两种弱相互作用的尿素无氟含碘衍生物对卤素阴离子(F-,Cl-,Br-和I-)的识别机理, 结果发现尿素衍生物受体分子A以其结构中的两个N-H键和两个C-I与卤素阴离子间形成四齿弱键进行识别. 其中包括2个N-H…X-红移氢键和2个C-I…X-蓝移卤键弱相互作用. 另外, 经BSSE校正后的A…F-, A…Cl-, A…Br-和A…I-分子识别体系中相互作用能ΔECP分别为-48.90, -121.78, -311.42和-96.55 kJ/mol, 从结合强度上来看, 受体A对Br-和Cl-具有较好的识别能力, 而对F-的识别能力相对较弱. 此外, 采用自然键轨道(NBO)理论分析了C…X-(X= F-,Cl-,Br-和I-)识别体系中红移氢键和蓝移卤键的电子行为与性质.  相似文献   

4.
在生物体中氨基酸通常以水作为溶剂,是形成细胞的重要成分.在该环境下,分子间氢键的产生会对氨基酸分子与水分子的结构和性质产生影响.为了研究其在基态和激发态下的性质,本文利用密度泛函理论(DFT)和含时密度泛函理论(TD-DFT)对甘氨酸分子和H2O分子在基态和激发态下的分子间氢键的静电势、键长、自然键轨道(NBO)电荷、分子中的原子理论(AIM)分析、Wiberg键级b、红外(IR)光谱、空穴-电子轨道和基态与激发态之间的电子转移进行了理论研究.结果表明:分子间氢键的形成会导致分子结构的改变和红外光谱振动频率的移动.在激发态下,分子间氢键有不同程度的增强或减弱.该计算结果为氢键的形成和激发态下分子间氢键的研究提供理论依据.  相似文献   

5.
用二阶微扰理论结合6-311+G**、6-311++G**和6-311++G(2d,2p)基组对氢键相互作用二聚体HNO···HArF进行研究.在MP2/6-311+G**、MP2/6-311++G**和MP2/6-311++G(2d,2p)水平上,利用标准方法和均衡校正方法对二聚体进行了几何优化、振动频率和相互作用能的计算.对于相互作用能采用G2MP2方法计算.计算结果表明存在两种稳定的二聚体HNO···HArF结构,在这两种结构中,Dimer I(H···F)比Dimer II(H···O)更加稳定.通过振动频率的计算表明,在Dimer I(H···F)中存在N-H···F蓝移氢键,在DimerII(H···O)中存在Ar-H···O红移氢键,并对蓝移氢键加以确认.利用电子密度拓扑学分析和自然键轨道分析对于氢键红移和蓝移进行了合理解释.  相似文献   

6.
根据量子化学理论,应用Gaussian09W程序中密度泛函理论(DFT)B3LYP方法,在6-311++G(d,p)基组水平上,研究了胸腺嘧啶与水分子团簇C_5H_6N_2O_2·(H_2O)n(n=1~4)分子团簇的基态结构以及红外光谱.通过对C_5H_6N_2O_2·(H_2O)n(n=1~4)分子团簇的结构优化,获得了团簇最稳定的结构.AIM程序分析表明:分子团簇间形成了氢键,而且电子密度ρ的强弱也反映了红移和蓝移的大小.之后使用Veda4软件对C_5H_6N_2O_2·(H_2O)n(n=1~4)分子团簇红外光谱的振动频率进行了分析,并对振动频率进行了比较.最后,分析四种最稳定结构的分子团簇的红外光谱表明O-H…O和N-H…O氢键的形成使得O-H和N-H之间伸缩频率减小,发生了红移;O-H…N氢键使O-H之间的弯曲振动频率变大,发生了蓝移.  相似文献   

7.
采用密度泛函B3LYP(Becke,three-parameter,Lee-Yang-PaH)/6-311++G**和HF(Hartree Fock)/6-311++G**方法,从理论上探讨了2-F-环氧丁烷分别与几种常见而重要的生物小分子咪唑(Iminazole)、噻唑(Thiazole)和恶唑(Oxazo1e)等分子间的弱相互作用,发现分子间同时存在N…H常规氢键和C-F…H-C赝氢键结构.弱相互作用能计算表明3个复合物的相对稳定性相当.计算结果表明,在C-F…H-C赝氢键结构中,与电子的直接供体F密切相关的共价键C-F键长增大,伸缩振动的频率红移,而作为电子受体的H-C基团,其C-H键伸缩振动光谱蓝移;另外,电子密度拓扑性质表明C-F…H-C赝氢键的共价性及离子性均与常规氢键相当.  相似文献   

8.
采用密度泛函理论的B3LYP方法,在6-31+G*基组水平上研究了儿茶素-胸腺嘧啶分子间相互作用机制,得到稳定的儿茶素-胸腺嘧啶复合物13个,并且复合物形成了2个或更多的氢键. 另外,在相同机组水平上进行了振动分析,结果表明儿茶素-胸腺嘧啶复合物间存在N-H…O、C-H…O、O-H…O三种类型氢键,氢键对于复合物的稳定性起着重要的作用. 应用了分子中的原子理论和自然键轨道理论对这13种复合物中氢键的性质和特征进行了分析. 发现所有的氢键复合物进行基组重叠误差校正后的相互作用能为-18.15~-32.99  相似文献   

9.
提出一种计算多肽中N-H…O=C分子内氢键键能的新方法.并将新方法应用于计算甘氨酸和丙氨酸二肽、三肽中N-H…O=C分子内氢键键能.利用密度泛函理论B3LYP/6-31G(d)方法优化几何构型和计算频率.对全部结构计算MP2/6-311 G(3df,2p)水平上的单点能量.结果表明:在甘氨酸二肽中氢键键能为-6.38 kcal/mol,在丙氨酸二肽中氢键键能为-7.09-、6.25 kcal/mol;在甘氨酸三肽中氢键键能为-5.62 kcal/mol,在丙氨酸三肽中氢键键能为-5.37,-5.74 kcal/mol.  相似文献   

10.
用密度泛函理论(DFT)方法研究B2H6分子的几何结构、空间电子密度分布和轨道动量分布以及振动频率等基本性质.取DFT理论中的B3LYP方法和6-311++G* *基组对乙硼烷分子的几何构型进行全优化计算后分析其空间电子密度分布.利用不同方法和基组得到了轨道动量分布.在B3LYP/6-311++G* *基础上对优化后的结构进行正则振动频率分析.  相似文献   

11.
The effect of substitution and cooperativity on the blue shift of Cl–F stretch vibration in H3C ··· ClF complex has been studied with quantum chemical calculations at the UMP2(Full)/aug-cc-pVTZ level. The electron-withdrawing group (F atom) in the electron donor decreases the blue shift, whereas the electron-donating group (methyl group) in the electron donor cause it to increase. The cooperativity between two different types of halogen bonds in H3C ··· ClF ··· ClF complex enhances the strength of single-electron halogen bond and the blue shift. The natural bond orbital (NBO) and atoms in molecules (AIM) analyses have been performed for the halogen-bonded complexes.  相似文献   

12.
A computational study of the complexes formed between HArF and XCX (X?=?O, S, and Se) has been performed at the MP2/aug-cc-pVTZ level. Two types of complexes were found. One is formed through a hydrogen bond with XCX as the electron donor and the other is formed through the σ-hole interaction with XCX as the electron acceptor. The OCO-FArH complex is more stable than the OCO-HArF complex, whereas the XCX-HArF (X?=?S and Se) complex is more stable than the XCX-FArH complex. The distant H-Ar bond is shortened and exhibits a blue shift, but the associated one displays a red shift in SCS-HArF and SeCSe-HArF complexes. When compared with XCX-HF complex, the structure of the complex suffers a great effect from the inserted noble gas atom. The natural bond orbital (NBO) and atoms in molecules (AIM) have been performed for a better understanding of the interactions.  相似文献   

13.
The dihydrogen-bonded complexes of ethylene and its chlorine derivatives with sodium hydride have been systematically investigated at the MP2/6-311++G(d,p) level. The studied complexes are divided into three groups (including Linear, Five- and Six-membered cyclic structures) based on the optimized structures. The structural, energetic and topological parameters are presented and analysed in terms of their possible correlation with the interaction energies and the intermolecular H?···?H distances. The nature of the electrostatic interaction in this type of dihydrogen bond has also been unveiled by means of atoms in molecules (AIM) and natural bond orbital (NBO) analysis. The effect of ring structure on the dihydrogen bonding systems has been considered by comparing with the corresponding linear structure. NBO analysis suggests that the electron density transfer (EDT) in cyclic structures have dual-channel character.  相似文献   

14.
利用密度泛函理论中的B3LYP方法, 选择LANL2DZ基组优化Tin(2~7)团簇得到各团簇的稳定结构,然后对稳定结构的束缚能及自然轨道进行分析. 研究结果表明: Tin(n=2~7)团簇都依带帽的形式在前一个团簇的结构基础上加一个原子变化而来; 通过自然轨道分析发现, 团簇原子的轨道存在sp-d杂化, 有大约一个电子从4s转移到了3d, 原子之间亦存在电子转移, 而且除Ti7外, 团簇键长由最外层4d轨道电子和3d轨道共同决定, 在Ti7中, 团簇键长由3d轨道决定.  相似文献   

15.
The bonding features and electronic structures of a series of transition metal carbon dioxide complexes have been studied by density functional theory (DFT) calculations combined with natural bond orbital (NBO) analysis and energy-decomposition analysis (EDA). NBO analysis shows that the interaction between the metal center and the carbon atom of the carbon dioxide ligand (M–C) is stronger than the other interaction between the metal center and the carbon dioxide ligand. Natural hybrid orbital (NHO) analysis gives the detailed bonding features of the M–C bond for each complex. The NBO charge distribution on the carbon dioxide unit in all studied complexes is negative, which indicates charge transfer from the metal center to the carbon dioxide ligand for all studied complexes. The hyperconjugation effect of the metal center and the two C–O bonds of the carbon dioxide ligand has been estimated using the NBO second-order perturbation stabilization energy. It was found that the NBO second-order stabilization energy of C–O?→?nM* is sensitive to the coordinated sphere and the metal center. Frontier molecular orbital (FMO) analysis shows that complexes 1 and 4 may be good nucleophilic reagents for activation of the carbon dioxide molecule. However, the EDAs show that the M–CO2 bond interaction energy of complex 4 is about two times as large as that of complex 1. The high M–CO2 bond interaction energy of complex 4 may limit its practical application.  相似文献   

16.
A theoretical study of the complexes formed between dimethyl sulfoxide (DMSO) and hypohalous acid (HOX, X = Cl, Br, and I) has been carried out at the MP2/aug-cc-pVTZ level. For each HOX, four minima binary complexes were found, two mainly with an OH???O hydrogen bond and the other two with an OX???O halogen bond. The hydrogen-bonded complexes are more stable than the halogen-bonded analogues for HOCl and HOBr, while both types of complexes have similar stability in the iodine case. A red shift was found for the associated H–O and X–O bond stretch vibrations and a small blue shift for the distant bonds. As the oxygen of DMSO simultaneously binds with two HOCl molecules, the corresponding interactions are weakened with diminutive effect. This diminutive effect is the largest in the complexes with two OH???O hydrogen bonds but the smallest in those with two OCl???O halogen bonds.  相似文献   

17.
18.
A theoretical study on heavier group‐14 substituting effect on the essential property of formamide, strong hydrogen bond with water and internal rotational barrier was performed within the framework of natural bond orbital (NBO) analysis and based on the density functional theory calculation. For heavier group‐14 analogues of formamide (YHONH2, Y = Si, Ge and Sn), the nN–πY=O conjugation strength does not always reduce as Y becomes heavier, for example, silaformamide and germaformamide have similar strength of delocalization. Heavier formamides prefer being H‐bond donors to form FYO–H2O complexes to being H‐bond acceptors to form FYH–H2O complexes. The NEDA analysis indicates that H‐bond energies of FYO–H2O complexes increase as moving down group 14 due to concurrently stronger charge transfer (CT) and electrostatic attraction and for the FYH–H2O complexes H‐bond strengths are similar. The model of CTs from FYO to H2O differs from that at FYH–H2O complexes, which are contributed not only by aligning lone‐pair orbital of O but also by another lone‐pair orbital. At two lowest lying excited states (the triplet and S1 excited states), formamide and its heavier analogues form double H‐bonds with H2O molecule at the same time. The barrier heights of internal rotation become gradually low from C to Sn, formamide (15.73 kcal/mol) > silaformamide (11.73 kcal/mol) > germaformamide (9.45 kcal/mol) > stannaformamide (7.50 kcal/mol) at the CCSD(T)/aug‐cc‐pVTZ//B3LYP/cc‐pVTZ level. NBO analysis indicates that the barrier does not only come from the nN→π*YO conjugation, and for heavier analogues of formamide, the nN→σ*YO hyperconjugation effect and steric effect considerably contribute to the overall rotational barrier. Copyright © 2013 John Wiley & Sons, Ltd.  相似文献   

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