儿茶素-胸腺嘧啶分子间相互作用模式的密度泛函研究

采用密度泛函理论的B3LYP方法,在6-31+G*基组水平上研究了儿茶素-胸腺嘧啶分子间相互作用机制,得到稳定的儿茶素-胸腺嘧啶复合物13个,并且复合物形成了2个或更多的氢键. 另外,在相同机组水平上进行了振动分析,结果表明儿茶素-胸腺嘧啶复合物间存在N-H…O、C-H…O、O-H…O三种类型氢键,氢键对于复合物的稳定性起着重要的作用. 应用了分子中的原子理论和自然键轨道理论对这13种复合物中氢键的性质和特征进行了分析. 发现所有的氢键复合物进行基组重叠误差校正后的相互作用能为-18.15～-32.99     

M-RNA碱基复合物(M=Ca~+和Mg~+)特征振动的密度泛函理论分析

采用密度函数理论的B3LYP交换关联能泛函在6-311+G(2df,2p)基组水平上,优化计算了Ca+,Mg+与RNA碱基嘧啶各同分异构体形成稳定复合物的结构,发现其中C1M,T1M和U1M(M=Ca+和Mg+)为最稳定复合物,并对这些复合物红外振动进行了计算.计算结果显示碱基嘧啶单体主要存在的两个红外特征振动,是由环振动和环外氧原子及与其成键的环上碳原子之间产生伸缩振动引起的.当形成复合物时,由于离子的参与,使单体碱基分子的振动情况发生了改变,主要表现在离子倾向于与环外负电子原子N和O原子成键,使与离子直接作用环外原子参与的特征振动频率减小,谱线红移;不与离子直接作用环外原子引起的特征振动频率增大,谱线蓝移.     

木犀草素与腺嘌呤相互作用的理论研究

本文采用密度泛函理论中的B3LYP方法,在6-31+G~*基组水平上对木犀草素—腺嘌呤复合物进行结构优化和振动频率分析,得到了16种稳定的木犀草素—腺嘌呤复合物.应用分子中的原子理论(AIM)分析、自然键轨道(NBO)理论分析得到复合物氢键性质和特征.通过基组重叠误差(BSSE)校正后的相互作用能、成键临界点电荷密度、二阶稳定化能综合分析,得出三氢键复合物C-11结构是最稳定的.综合比较DNA的四个碱基与木犀草素间的相互作用,木犀草素与胸腺嘧啶的相互作用最强,木犀草素-腺嘌呤相互作用最弱,DNA的四个碱基与木犀草素间的相互作用能均比木犀草素与水间相互作用能大,这说明木犀草素作为抗癌药物能有效的发挥作用.     

M-Uracil复合物(M=Ca2+和Mg2＋)特征振动的密度泛函理论分析

采用密度函数理论的B3LYP交换关联能泛函在6-311 G(2df,2p)基组水平上,对Ca2 、Mg2 与尿嘧啶(简称U)三种各互变异构体(简称U1、U2和U3)形成的复合物进行了优化计算,获得稳定复合物的构形,并对这些稳定复合物进行振动频率计算.分析计算结果发现由于离子的参与,单体分子振动的力常数和折合质量均会发生变化,导致红外振动谱线发生不同程度移动;进一步分析发现C-H和O-H键的氢原子作弯曲振动和伸缩振动的谱线移动不确定,直接与离子作用的氧原子参与的振动谱线会发生红移,不直接与离子作用的氧原子参与的振动谱线会发生蓝移.     

木犀草素和鸟嘌呤间相互作用的理论研究

采用密度泛函理论中的B3LYP方法对木犀草素和鸟嘌呤之间的相互作用和机理进行研究,分别找到了十八种木犀草素和鸟嘌呤复合物. 结果表明这些复合物是通过氢键相互作用而稳定存在的. 利用分子中的原子理论(AIM)和自然键轨道理论(NBO)对体系中的氢键进行研究. 通过基组重叠误差校正的复合物间的相互作用能为6.04～56.94 kJ/mol,计算结果表明在木犀草素-鸟嘌呤复合物中有很强的氢键相互作用. 比较了木犀草素和四个DNA碱基间的相互作 用,发现木犀草素-胸腺嘧啶是最强的,木犀草素-腺嘌呤是最弱的.     

外电场对对硝基氯苯分子结构与电子光谱影响的研究

为达到降解有机污染物硝基氯苯的目的, 采用外加平行电场的方法, 研究电场对硝基氯苯化合物的分子结构和电子光谱等的影响. 以对硝基氯苯分子为研究对象, 采用密度泛函B3LYP方法在6-311+g(d, p) 基组水平上优化并计算了不同外电场作用下pCNB的基态分子结构、电偶极矩和分子总能量, 在此基础上采用含时密度泛函研究了该分子的前六个激发态的波长、振子强度受外电场的影响规律.结果表明: C–Cl, C–N键长随电场增加而快速增大, 即键能快速减小, 同时苯环上的C–C, C–H键长的变化很小, 且有增有减, 说明分子的降解可能是C–Cl, C–N键断裂而苯环则相对稳定. 同时分子总能量随电场先增大后变小, 电偶极矩刚好相反.另外, 最大吸收波长λ_max 随电场先缓慢减小, 后快速增大, 导致电子跃迁相对容易, 而振子强度随电场变化则相对比较复杂. 关键词： 对硝基氯苯 外电场 密度泛函 含时密度泛函     

晶体学辅助的2-吡啶甲酸固体~(13)C化学位移理论计算归属（英文）

有机分子的互变异构现象在溶液中较为常见.而对于有机固体而言,存在互变异构可能的分子常以单一的能量最稳定的异构体形式存在. 2-吡啶甲酸(PCA)是一个较为罕见的案例,它的晶体结构中同时存在有中性分子和两性离子两种互变异构体.由于超长的质子纵向弛豫时间,PCA的固体~(13)C核磁共振(NMR)实验的化学位移归属存在困难.密度泛函理论(DFT)计算,特别是基于周期性模型的方式是一种可以准确快捷归属其化学位移的方案.然而,由于PCA结构中活泼质子的占位无序,其结构并不能直接或经简单处理后递交计算.本文中,我们通过晶体学手段构建了一个虚拟晶体结构.基于该虚拟结构的~(13)C化学位移计算值可与实验值准确吻合.此外,不同互变异构状态的PCA表现出不同的特征化学位移,这一信息可被用来分析PCA在其晶体复合物中的分子状态.     

紫草素与胞嘧啶相互作用的理论研究北大核心CSCD

采用密度泛函理论的M06方法在6-311++G**基组水平下对紫草素-胞嘧啶复合物进行了结构优化,得到了14个稳定的紫草素-胞嘧啶复合物.我们还应用了分子中的原子(AIM)理论和自然键轨道(NBO)理论对这14个复合物中的氢键的性质和特征进行了分析.通过基组重叠误差(BSSE)校正后的相互作用能,成键临界点电荷密度,二阶稳定化能的计算和分析,发现复合物1的结构是最稳定的.     

晶体学辅助的2-吡啶甲酸固体13C化学位移理论计算归属

有机分子的互变异构现象在溶液中较为常见.而对于有机固体而言，存在互变异构可能的分子常以单一的能量最稳定的异构体形式存在.2-吡啶甲酸（PCA）是一个较为罕见的案例，它的晶体结构中同时存在有中性分子和两性离子两种互变异构体.由于超长的质子纵向弛豫时间，PCA的固体¹³C核磁共振（NMR）实验的化学位移归属存在困难.密度泛函理论（DFT）计算，特别是基于周期性模型的方式是一种可以准确快捷归属其化学位移的方案.然而，由于PCA结构中活泼质子的占位无序，其结构并不能直接或经简单处理后递交计算.本文中，我们通过晶体学手段构建了一个虚拟晶体结构.基于该虚拟结构的¹³C化学位移计算值可与实验值准确吻合.此外，不同互变异构状态的PCA表现出不同的特征化学位移，这一信息可被用来分析PCA在其晶体复合物中的分子状态.     

5-氟尿嘧啶与一氧化碳复合物的结构与性质

采用量子化学密度泛函理论在B3LYP/6-311++G**水平上对5-氟尿嘧啶(5-FU)与CO形成的复合物体系进行了理论计算. 计算共获得了稳定的5-FU异构体12个,双酮式结构5-FU0为其最稳定的构型. 优化获得了稳定复合物44个,其结合方式是CO中的C或O原子与5-FU 的H8或H12键形成氢键;CO分子的C 与5-FU结合具有更大的优势,形成复合物的结合能大,更稳定. 研究还发现,复合物的稳定性与其单体稳定性和C13对氢键相邻单键的二阶稳定化能有关,5-FU0-A为最稳定复合物.     

Self-organization of five species in a cyclic competition game

Cyclic competition game models, particularly the “rock–paper–scissors” model, play important roles in exploring the problem of multi-species coexistence in spatially ecological systems. We propose an extended “rock–paper–scissors” game to model cyclic interactions among five species, and find that two of the five can coexistent when biodiversity disappears, which is different from the “rock–paper–scissors” game. As the number of fingers is five, we named the new model the “fingers” game, where the thumb, forefinger, middle finger, ring finger, and little finger cyclically dominate their subsequent species and are dominated by their former species. We investigate the “fingers” model in two ways: direct simulations and nonlinear partial differential equations. An important finding is that the number of species in a cyclic competition game has an influence on the emergence of biodiversity. To be specific, the “rock–paper–scissors” model is in favor of maintaining biodiversity in comparison with the “fingers” model when the variables (population size, reproduction rate, selection rate, and migration rate) are the same. It is also shown that the mobility and reproduction rate can promote or jeopardize biodiversity.     

Experimental study on downstep in Chinese intonation

Downstep in pitch contour of Chinese Putonghua is examined using subtly designed sentences by controlling tone combinations. The results show both automatic and nonautomatic downstep phenomena exist in Chinese. In non-automatic downstep, low tones compress downwards the pitch range of the following syllables. and the main influence of downstep is on topline. Low tone not only lower the topline behind it, but also raise the high tones before it, the effects are compatible with each other. In automatic downstep, the topline of pitch contour in intonational phrase is presented as a linear downtrend, but it differs among speakers due to the effect of personal stress practice. In comparison with downstep phenomenon in other tone or non-tone languages, the downstep ratio in Chinese is not constant, and the domain of downstep is not limited within the adjacent tones.     

Contrastive analysis on tone between Putonghua and Taiwan Mandarin

The differences of the pitch and duration of Chinese syllables between Putonghua （PTH） and Taiwan Mandarin （TM） were studied. The speech materials to be used are not only isolated syllables, but also sentences. The results reveal that： For the isolated syllables, T1 and T2 in TM are influenced by Minnan dialect, therefore their pitch are lower than those in PTH. T3 is fall-rise in PTH, while it is fall in TM. Moreover, the syllable duration sequence for different tone is T3〉T2〉T1〉T4 in PTH, while it is T1〉T2〉T3〉T4 in TM. For the syllables in sentences, T2 is mid-rise in PTH, while it is mid-level in TM. And the T3 is longer than T4 but shorter than T1 or T2 in PTH, while it is the shortest in TM. Furthermore the effects of prosodic phrase boundary on duration for different tones are almost the same in PTH, but the lengthening part of T1 or T2 is longer than that of T3 or T4 in TM.     

Abelian-Higgs phase of SU(2) QCD and glueball energy

It is shown that SU(2) QCD admits an dual Abelian-Higgs phase, with a Higgs vacuum of a type-Ⅱ superconductor. This is done by using a connection decomposition for the gluon field and the random-direction approximation. Using a bag picture with soft wall, we presented a calculational procedure for the glueball energy based on the recent proof for wall-vortices [Nucl. Phys. B 741(2006)1].     

Signal generation in an isotropic medium in scanning electron acoustic microscope

Based on the research in Ref. [5][Materials Science and Engineering, 1989; A122： 57 63], an improved model of heat source is set up, the different modes of Lamb wave in an isotropic sample generated by a chopped electron beam at frequency f are obtained with integral transform and normal function expansion method, and the output signal of PZT coupled at the back surface of the sample is found out. The generation mechanism of SEAM （Scanning Electron Acoustic Microscopy） signal is discussed. It shows that the SEAM is a near field imaging technique with high spatial resolution and its best lateral spatial resolution is about 2√2α （α is the radius of the focused electron beam）. Some of experimental results of SEAM images are presented in the paper and it shows that the spatial resolution of SEAM is better than 0.5 μm and smaller than the thermal diffusion length of the sample. Therefore the character of near field imaging in SEAM is also proved experimentally.     

High efficiency filtering using two-dimensional photonic crystal coupled cavity structures

Transmission spectra of coupled cavity structures (CCSs) in two-dimensional (2D) photonic crystals (PCs) are investigated using a coupled mode theory, and an optical filter based on CCS is proposed. The performance of the filter is investigated using finite-difference time-domain (FDTD) method, and the results show that within a very short coupling distance of about 3λ, where λ is the wavelength of signal in vacuum, the incident signals with different frequencies are separated into different channels with a contrast ratio of 20 dB. The advantages of this kind of filter are small size and easily tunable operation frequencies.     

Real-time restoration of rotational blurred image using gradient-loading

The key to the restoration of rotational motion blurred image is how to restore the image under a low cost and to correct the irreversibility of the degradation function matrix.Based on the special qualities of degradation function matrix and precise deduction in space-domain, we present a new approach using gradient-loading for restoration of rotational blurred image.By easily adding a gradient operator, the irreversibility of the original matrix is corrected and can be applied for inverse filtering then.Gradientloading is the optimized approach which combines the advantages of both the approaches using constrained least square filtering and traditional diagonal-loading.Compared with the approach using least square filtering, its peak signal-to-noise ratio (PSNR) is improved from 3.18 to 6.46dB, while the computing time is reduced to 1/2-1/3.Experimental results demonstrate the effectiveness, noise-resistibility, robustness, and low complexity of this approach, which make it more suitable for real-time environment.     

All-Optical Logic Device Using Bent Nonlinear Tapered Y-Junction Waveguide Structure

We propose an all-optical logic device made of a bent tapered Y-junction waveguide with a Kerr-type nonlinear interface. It could provide an AND gate, OR gate, and exclusive-OR (XOR) gate. We could obtain different transmission results by adjusting the bending angle. The numerical simulation results show that the device functions as AND, OR, and XOR gates.     

Real-time, continuous-wave terahertz imaging by a pyroelectric camera

Real-time, continuous-wave terahertz (THz) imaging is demonstrated. A 1.89-THz optically-pumped farinfrared laser is used as the illumination source, and a 124 × 124 element room-temperature pyroelectric camera is adopted as the detector. With this setup, THz images through various wrapping materials are shown. The results show that this imaging system has the potential applications in real-time mail and security inspection.