The role of metal cation in electron-induced dissociation of tryptophan

The fragmentation of tryptophan (Trp) – metal complexes [Trp+M]⁺, where M = Cs, K, Na, Li and Ag, induced by 22 eV energy electrons was compared to [Trp+H]⁺. Additional insights were obtained through the study of collision-induced dissociation (CID) of [Trp+M]⁺ and through deuterium labelling. The electron-induced dissociation (EID) of [Trp+M]⁺ resulted in the formation of radical cations via the following pathways: (i) loss of M to form Trp^+?, (ii) loss of an H atom to form [(Trp-H)+M]^+?, and (iii) bond homolysis to form C₂H₄NO₂M^+?. Deuterium labelling suggests that H atom loss can occur from heteroatom and/or C–H positions. Other types of fragment ions observed include: C₉H₇NM⁺, C₉H₈N⁺, M⁺, C₂H₃NO₂M⁺, CO₂M⁺, C₁₀H₁₁N₂M⁺, C₁₀H₉NOM⁺. Formation of C₂H₄NO₂M^+? and C₉H₇NM⁺ cations suggests that the metal interacts with both the backbone and aromatic side chain, thus implicating π-interactions for all M. CID of [Trp+M]⁺ resulted in: loss of metal cation (for M = Cs and K); successive loss of NH₃ and CO as the dominant channel for M = Na, Li and Ag; formation of C₂H₃NO₂M⁺. Preliminary DFT calculations were carried out on [Trp+Na]⁺ and [(Trp-H)+Na]^+? which reveal that: the most stable conformation involves chelation by the backbone together with a $\pi $ -interaction with the indole side chain; loss of H atom from $\alpha $ -CH of the side chain is thermodynamically favoured over losses from other positions, with the resultant radical cation maintaining a (N, O, ring) chelated structure which is stabilized by conjugation.     

Comparison of secondary ion intensity enhancement from polymers on silicon and silver substrates by using Au-TOF-SIMS

The usefulness of the usage of cluster primary ion source together with an Ag substrate and detection of Ag cationized molecular ions was studied from the standpoint to realize high sensitivity TOF-SIMS analysis of organic materials. Although secondary ions from polymer thin films on a Si substrate can be detected in a higher sensitivity with Au₃⁺ cluster primary ion compared with Ga⁺ ion bombardment, it was clearly observed that the secondary ion intensities from samples on an Ag substrate showed quite a different tendency from that on Si. When monoatomic primary ions, e.g., Au⁺ and Ga⁺, were used for the measurement of the sample on an Ag substrate, [M+Ag]⁺ ions (M corresponds to polyethylene glycol molecule) were detected in a high sensitivity. On the contrary, when Au₃⁺ was used, no intensity enhancement of [M+Ag]⁺ ions was observed. The acceleration energy dependence of the detected secondary ions implies the different ionization mechanisms on the different substrates.     

Formation and photofragmentation properties of isolated aromatic amino acid-silver cluster hybrids

The formation of isolated [ (Trp-2H)+Ag₉] ⁺ and [ (Tyr-2H)+Ag₉] ⁺ amino-acid-Ag₉ hybrids is reported. The photofragmentation yields of the aromatic amino acid-silver cluster hybrids, as well as those of the protonated tryptophan and tyrosine molecules ([Trp+H]⁺ and [Tyr+H]⁺) have been recorded. The fragmentation yields of the complexes are higher than the yields for [Trp+H]⁺and [Tyr+H]⁺ and present an extension of the fragmentation on the red side of the spectrum. The photofragmentation spectrum of [ Trp+Ag₉] ⁺ was recently reported [Mitric et al., J. Chem. Phys. 127, 134301 (2007)]. While the optical spectra of substituted [ (Trp-2H)+Ag₉] ⁺ and non-substituted [ Trp+Ag₉] ⁺ complexes are very similar, a strong modification of the fragmentation channels between the two complexes is observed. The fragmentation channels are sensitive to the type of bonding in aromatic amino acid-silver cluster hybrids and can be used as fingerprints of structures.     

Rhodamine B-based “turn-on” fluorescent and colorimetric chemosensors for highly sensitive and selective detection of mercury (II) ions

Two novel macromolecules based on 2-[3-(2-aminoethylsulfanyl)propylsulfanyl]ethanamine covalently bound to one and two units of rhodamine-B moieties, 1 and 2, were prepared and utilized as fluoroionophores and chromophores for the optical detection of Hg²⁺ ions. The sensors were readily prepared by a conventional two-step synthesis. Especially, sensor 1 exhibits high sensitivity and selective OFF–ON fluorescence enhancement and chromogenic change upon binding to Hg²⁺, which served as a “naked-eye” indicator by a noticeable color change of the solution (from colorless to pink–red color). 1 is shown to discriminate various competing metal ions, particularly Ag⁺ and Cu²⁺, as well as Cd²⁺, Na⁺, Li⁺, K⁺, Ba²⁺, Co²⁺, Ni²⁺, Mg²⁺, Mn²⁺ and Al³⁺, with a detection limit of 10 ppb.     

Collision induced dissociation of doubly charged silver clusters Agn 2+, n=21,22,23

Doubly charged silver clusters Ag_n ²⁺, n=21, 22, 23, are produced by electron bombardment of an Ag_n ⁺ ensemble stored in a Penning trap. After mass selection the clusters are subjected to collision induced dissociation. The fragmentation channels are determined by time-of-flight mass spectrometry after ejection of the resulting ion ensemble from the trap. Monomer evaporation is the only decay path observed. This revised version was published online in August 2006 with corrections to the Cover Date.     

A theoretical prediction on the ground‐state complexes bound by metal ions to thymine base isomers

Stability orderings of 150 stable complexes formed by metal ions (Na⁺, K⁺, Ca²⁺, Mg²⁺, and Zn²⁺) and 13 stable thymine tautomers in both solvent and gas phases are obtained, and the optimal binding site for a metal ion in a specific thymine tautomer is identified. Results indicate that the complex with the canonical thymine tautomer (T1) is more stable than those with the rare ones, and the monodentate complex M–T1o4(o2) are their ground‐state form in the solvent phase. The ground‐state thymine complexes bound by Ca²⁺, Mg²⁺, or Zn²⁺ become bidentate M–T3o4lo2,n3, which is derived from a rare thymine tautomer T3o4l, whereas those bound by Na⁺ and K⁺ are still monodentate complexes M–T1o4(o2), however, in the gas phase. The differences in stability are discussed in detail from the binding strength of metal ions, relative energy of the corresponding thymine tautomers, and solution effect. Copyright © 2011 John Wiley & Sons, Ltd.     

A New Fluorescent Chemosensor Detecting Co<Superscript>2+</Superscript> and K<Superscript>+</Superscript> in DMF Buffered Solution

A new fluorescent chemosensor 2-(2-thiophene)imidazo [4,5,f]-1,10-phenanthroline (L) was prepared and characterized. By adding univalent or divalent metal ions such as Na⁺, K⁺, Mg²⁺, Ba²⁺, Mn²⁺, Fe²⁺, Co²⁺, Ni²⁺, Cu²⁺, Ag⁺, Zn²⁺, Cd²⁺ and Hg²⁺ ions into the solution of L in DMF under buffered conditions with the working pH ranging from 7.0 to 8.0, we found that L could be used to detect K⁺ ratiometricly and it could also be applied to sense Co²⁺ with the phenomenon of fluorescence quenching of L. While the response behavior of L was not discernibly affected by other examined metal ions.     

Collision processes of Hydride species in Hydrogen plasmas: III. The Silane family

Cross sections are provided for most important collision processes of the Silicon‐Hydrides from the “Silanefamily”: SiH_y (y = 1 ? 4) molecules and their ions SiH⁺_y, with (plasma) electrons and protons. The processes include: electron impact ionization and dissociation of SiH_y, dissociative excitation, ionization and recombination of SiH⁺_y ions with electrons, and charge ‐ and atom ‐ exchange in proton collisions with SiH_y. All important channels of dissociative processes are considered. Information is also provided on the energetics (reactants/products energy loss / gain) of each individual reaction channel. Total and partial cross sections are presented in compact analytic forms. The critical assessment of data, derivation of new data and presentation of results follow closely the concepts of the recently published related databases for Carbon‐Hydrides, namely for the Methane family [1, 2], and for the Ethane‐ and the Propane families [3], respectively. (© 2003 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

New dithiacrown–ether butadienyl dyes: synthesis,structure, and complex formation with heavy metal cations

Benzothiazole type butadienyl dyes containing a dithia‐15‐crown‐5 ( 2a ) or dithia‐18‐crown‐6 ether ( 2b ) moieties were synthesized. The structures of dyes 2a , b and their complexes with Ag⁺ and Pb²⁺ were studied by an X‐ray crystallography. It was found that the conformations of dithiacrown–ether moieties of dyes 2a , b are unfavorable for complex formation and change significantly upon binding of Ag⁺ or Pb²⁺. The complexation of 2a , b with Ag⁺, Cd²⁺, Pb²⁺, and Hg²⁺ in water–acetonitrile mixtures with different contents of water (P_W = 0–75%, v/v) was studied by ¹H NMR, UV–Vis spectroscopy, and polarography. In anhydrous acetonitrile, the stability constants of 1:1 complexes change in the sequence Cd²⁺ < Pb²⁺ ≤ Ag⁺ << Hg²⁺ in the case of 2a and in the sequence Cd²⁺ < Ag⁺ < Pb²⁺ << Hg²⁺ in the case of 2b . As P_W increases, the thermodynamic stability of Ag⁺ complexes increases. The opposite effect is observed for the complexes with Cd²⁺, Pb²⁺, and Hg²⁺. When P_W ～ 50%, the stability constants of complexes with Cd²⁺ and Pb²⁺ become too small to be measured. The selectivity of ligands 2a , b toward Hg²⁺ versus Ag⁺ is very high at any P_W values (selectivity coefficients > 10⁴). The complexation of 2a , b with Hg²⁺ at P_W ≤ 50% is accompanied by a substantial hypsochromic effect. This allows dithiacrown‐containing butadienyl dyes to be used as selective optical molecular sensors for heavy metal ions, in particular, in aqueous solutions. Copyright © 2009 John Wiley & Sons, Ltd.     

Effect of Pendant Group Length Upon Metal Ion Complexation in Acetonitrile by Di-Ionized Calix[4]Arenes Bearing Two Dansyl Fluorophores

A series of three di-ionizable calix[4]arenes with two pendant dansyl (1-dimethylaminonaphthalene-5-sulfonyl) groups linked to the lower rims was synthesized. Structures of the three ligands were identical except for the length of the spacers which connected the two dansyl groups to the calix[4]arene scaffold. Following conversion of the ligands into their di-ionized di(tetramethylammonium) salts, absorption and emission spectrophotometry were utilized to probe the influence of metal cation (Li⁺, Na⁺, K⁺, Rb⁺, Cs⁺, Mg²⁺, Ca²⁺, Sr²⁺, Ba²⁺, Ag⁺, Cd²⁺, Co²⁺, Fe²⁺, Hg²⁺, Mn²⁺, Pb²⁺, Zn²⁺ and Fe³⁺) complexation in acetonitrile. Upon complexation with these metal cations, emission spectra underwent marked red shifts and quenching of the dansyl group fluorescence for the di-ionized ligand with the shortest spacer. A similar effect was noted for the di-ionized ligand with an intermediate spacer for all of the metal ions, except Ba²⁺. For the di-ionized ligand with the longest spacer, the metal cations showed different effects on the emission spectrum. Li⁺, Mg²⁺, Ca²⁺ and Ba²⁺ caused enhancement of emission intensity with a red shift. Other metal cations produce quenching with red shifts in the emission spectra. Transition metal cations interacted strongly with all three di-ionized ligands. In particular, Fe³⁺ and Hg²⁺ caused greater than 99% quenching of the dansyl fluorescence in the di-ionized ligands.     

Cation-mediated sandwich formation between benzene and pillar[5]arene: a DFT study

Cation–π interactions in alkali metal ion (Li⁺, Na⁺ and K⁺)–pillar[5]arene complexes and sandwiches of pillar[5]arene and benzene formed via alkali metal ions are studied in the light of density functional theory. Several possible modes of interaction between metal ions and pillar[5]arene have been studied. Results suggest that interaction is stronger in the complexes with the metal ion present inside the cavity of the pillar[5]arene as compared to that where the metal ion is outside the cavity. The calculated interaction energy further reveals that though cation–π complexes with larger number of alkali metal ions are unstable, however, corresponding sandwiches are stable, which further support the fact that pillar[5]arene–metal ion complexes can interact with other π–electron-rich species. Absorption spectra of the complexes formed undergo both blue and red shifts as compared to the pillar[5]arene.     

Dissociation of alkane ionized molecules

The subject of investigation is the fragmentation of variously charged molecular ions arising in col-lisions of several kiloelectronvolt H⁺, He²⁺, and Ar⁶⁺ ions with molecules of the simplest alkanes (from methane to butane). Using the method of time-of-flight mass spectrometry, the formation cross sections of dissociation-induced fragment ions are measured. The dissociation takes place when an incident ion captures an electron from a methane, ethane, or propane molecule. The role of additional ionization of the molecule, which accompanies the electron capture by the incident ion, is elucidated. The kinetic energy spectrum for protons resulting from the fragmentation of multiply charged alkane ions is determined. The most plausible kinetic energies of protons depending on the degree of ionization and molecule size fall into the range 1–25 eV. It is shown that, when the molecule loses several electrons, the kinetic energies of protons are governed by Coulomb interaction between all fragment ions and are determined by their flying apart from the relative spatial arrangement of corresponding atoms in a parent molecule.     

Complexation and DFT studies of lower rim hexahomotrioxacalix[3]arene derivatives bearing pyridyl groups with transition and heavy metal cations. Cone versus partial cone conformation

The binding of representative alkali, alkaline earth, transition and heavy metal cations by 2‐pyridylmethoxy derivatives (1b, in cone and partial cone conformations) of p‐tert‐butylhexahomotrioxacalix[3]arene was studied. Binding was assessed by extraction studies of the metal picrates from water into dichloromethane and by stability constant measurements in acetonitrile and methanol, using spectrophotometric and potentiometric techniques. Microcalorimetric studies of some selected complexes in acetonitrile were performed, as well as proton NMR titrations. Computational methods (density functional theory calculations) were also employed to complement the NMR data. The results are compared with those obtained with the dihomooxacalix[4]arene 2b and the calix[4]arene 3b derivative analogues. Partial cone‐1b is the best extractant for transition and heavy metal cations. Both conformers of 1b exhibit very high stability constants for soft and intermediate cations Pb²⁺, Cd²⁺, Hg²⁺, Zn²⁺ and Ni²⁺, with cone‐1b the strongest binder (ML, log β ≥ 7) and partial cone‐1b the most selective. Both derivatives show a slight preference for Na⁺. Besides the formation of ML complexes, ML₂ and M₂L species were also observed. The former complexes were, in general, formed with the transition and heavy metal cations, whereas the latter were obtained with Ag⁺ and Hg²⁺ and partial cone‐1b. In most cases, these species were corroborated by the proton NMR and density functional theory studies. Copyright © 2013 John Wiley & Sons, Ltd.     

Solid phase synthesis of novel α/β‐tetrapeptides,electrospray ionization mass spectrometric evaluation of their metal cation complexation behavior,and conformational analysis using density functional theory (DFT)

Thirty‐four novel α/β‐tetrapeptides ( 1–34 ) have been prepared employing solid‐phase and in‐parallel synthetic protocols. α/β ‐Tetrapeptides 1 – 34 were prepared by a combination of three α‐amino acid residues (alanine (Ala), phenylalanine (Phe), and isoleucine (Ile)) with one β‐amino acid residue (β³‐homophenylglycine). The corresponding complexes of several selected α/β‐tetrapeptides with alkali, alkaline earth, and transition metals, [tP + M⁺], were evaluated using ion electrospray‐ionization mass spectrometry (ESI‐MS). According to the results from analysis of mixtures, we can conclude that the position of the β‐amino acid is determinant in the affinity toward different metal cations. Computational modeling (DFT, B3LYP 6‐311++G) provided useful information regarding the most likely coordination sites of the metal ions on the receptor α/β‐tetrapeptide 12 , HO₂C‐α‐Phe‐α‐Phe‐α‐Ile‐β³‐hPhg‐NH₂, as well as the conformational changes induced by the metal upon [tP + M⁺] complex formation. Copyright © 2008 John Wiley & Sons, Ltd.     

Interaction between 1-[p-(dimethylamino) benzoyl]-4′-phenyl-semicarbazide and Cu

A new compound, 1-[p-(dimethylamino)benzoyl]-4′-phenyl-semicarbazide (1) was synthesized and showed highly selective response to Cu²⁺ over other metal ions such as Pb²⁺, Mg²⁺, Fe²⁺, Co²⁺, Zn²⁺, Cd²⁺, Hg²⁺, Ni²⁺, Ca²⁺, Ag⁺, Na⁺, K⁺, and Li⁺. The control compound, 1-[p-(dimethylamino)benzoyl]-4-phenyl-thiosemicarbazide (2), showed different fluorescence spectral response to Cu²⁺. A 1:1 complex between Cu²⁺ and 1 was formed while 1:1 and 1:2 complexes between Cu²⁺ and 2 were formed. The binding model between the receptor (1 or 2) and Cu²⁺ was supported by IR spectra, mass spectra, and computation model. 1 possessed higher selectivity towards Cu²⁺ compared with 2 owing to the difference of complexation ability between urea and thiourea groups.     

Characterization of Ir(ppy)3 and [Ir(ppy)2 bpy]+ by infrared,Raman spectra and surface‐enhanced Raman scattering

The Raman and infrared spectra of fac ‐tris(2‐phenylpyridinato‐N,C2′)iridium(III), Ir(ppy)₃ and surface‐enhanced resonance Raman spectra of bis(2‐phenyl pyridinato‐) (2,2′bipyridine) iridium (III), [Ir(ppy)₂ (bpy)]⁺ cation were recorded in the wavenumber range 150–1700 cm⁻¹, and complete vibrational analyses of Ir(ppy)₃ and [Ir(ppy)₂ (bpy)]⁺ were performed. Most of the vibrational wavenumbers were calculated with density‐functional theory agree with experimental data. On the basis of the results of calculation and comparison of the spectra of both complexes and their analogue [Ru(bpy)₃]²⁺, we assign the vibrational wavenumbers for metal–ligand modes; metal–ligand stretching wavenumbers are 277/307 and 261/236 cm⁻¹ for Ir(ppy)₃, and 311/324, 257/270, 199/245 cm⁻¹ for [Ir(ppy)₂ bpy]⁺. Surface‐enhanced Raman scattering spectra of [Ir(ppy)₂ bpy]²⁺ were measured at two wavelengths on the red and blue edges of the low‐energy metal‐to‐ligand charge‐transfer band. According to the enhanced Raman intensities for the vibrational modes of both ligands ppy and bpy, the unresolved charge‐transfer band is deduced to consist of charge‐transfer transitions from the triplet metal to both ligands ppy and bpy. Copyright © 2010 John Wiley & Sons, Ltd.     

Self‐assembly of a [2]pseudorotaxane complex by the threading of a nitrobenzimidazol‐based guest on dibenzo‐24‐crown ether host

A new derivative of the previously reported 1,2‐bis(benzimidazol‐2‐yl)ethane motif, cation [1H₂]²⁺, was synthesized under microwave irradiation and fully characterized by solution NMR, high‐resolution mass spectrometry, cyclic voltammetry and X‐ray crystallography. This cation presents a linear geometry and incorporates nitro substituents as electrochemical handles. In solution, cation [1H₂]²⁺, is capable of threading the cavity of dibenzo‐24‐crown‐8 ether host (DB24C8) giving rise to a [2]pseudorotaxane complex [1H₂?DB24C8]²⁺, regardless of the counterion, [CF₃SO₃]^? or [CF₃COO] ^?. The interpenetrated structure of [1H₂?DB24C8]²⁺ was proven by solution NMR and X‐ray crystallography. This host–guest complex is held together by several non‐covalent interactions, such as hydrogen bonding and ion‐dipole. An electrochemical study of [1H₂]²⁺ in the presence of variable amounts of DB24C8 was performed; due to the irreversible redox behavior of cation [1H₂]²⁺, it was not possible to electrochemically control the association/dissociation process with DB24C8. Copyright © 2014 John Wiley & Sons, Ltd.     

Solvation structure of magnesium,zinc, and alkaline earth metal ions in N,N‐dimethylformamide,N,N‐dimethylacetamide,and their mixtures studied by means of Raman spectroscopy and DFT calculations—Ionic size and electronic effects on steric congestion

The solvation structure of magnesium, zinc(II), and alkaline earth metal ions in N,N‐dimethylformamide (DMF) and N,N‐dimethylacetamide (DMA), and their mixtures has been studied by means of Raman spectroscopy and DFT calculations. The solvation number is revealed to be 6, 7, 8, and 8 for Mg²⁺, Ca²⁺, Sr²⁺, and Ba²⁺, respectively, in both DMF and DMA. The δ (O C N) vibration of DMF shifts to a higher wavenumber upon binding to the metal ions and the shift Δν(= ν_bound − ν_free) becomes larger, when the ionic radius of the metal ion becomes smaller. The ν (N CH₃) vibration of DMA also shifts to a higher wavenumber upon binding to the metal ions. However, the shift Δν saturates for small ions, as well as the transition‐metal (II) ions, implying that steric congestion among solvent molecules takes place in the coordination sphere. It is also indicated that, despite the magnesium ion having practically the same ionic radius as the zinc(II) ion of six‐coordination, their solvation numbers in DMA are significantly different. DFT calculations for these metalsolvate clusters of varying solvation numbers revealed that not only solvent–solvent interaction through space but also the bonding nature of the metal ion plays an essential role in the steric congestion. The individual solvation number and the Raman shift Δν in DMF–DMA mixtures indicate that steric congestion is significant for the magnesium ion, but not appreciable for calcium, strontium, and barium ions, despite the solvation number of these metal ions being large. Copyright © 2006 John Wiley & Sons, Ltd.     

Enhanced peptide molecular imaging using aqueous droplets

A new method in time-of-flight secondary ion mass spectrometry (ToF-SIMS) imaging, the droplet-enhanced method, was developed for the molecular analysis of biomaterials. To facilitate the ionization of biomolecules, a small amount of aqueous solution containing a variety of protonation agents as ionization-enhancing agents was dropped onto peptide samples before ToF-SIMS measurement. Using trifluoroacetic acid (TFA) as an enhancing agent, protonated insulin (MW 5733) ions were detected as not only [M + H]⁺ but also [M + 2H]²⁺ and [M + 3H]³⁺ from its film sample, using a Ga⁺ primary beam. TFA promoted the ionization of the large molecules much more effectively than did the other acids, and this peculiarity is related to both Na⁺ and Au₃⁺ intensities. We also demonstrated the visualization of dot-patterned insulin drawn with our bubble jet (BJ) printing technology using insulin molecular ion signals.     

Substrate effects on the analysis of biomolecular layers using Au, Au3 and C60 bombardments

Effects of platinum silicon, graphite and PET substrates on the secondary ion yield of sub-monolayer and multilayer samples of Cyclosporin A following 20 keV Au⁺, Au₃⁺and C₆₀⁺ impacts have been investigated. The obtained results of sub-monolayer samples show that platinum enhances the yield of the pseudo-molecular ion following Au⁺ and Au₃⁺ impacts due to the high density of the substrate that enables the energy of the primary ions to be deposited near the surface. C₆₀⁺ impacts on sub-monolayer samples are less effective, but there is an enhancement on PET substrates. Impacts of 20 keV Au⁺ and Au₃⁺ are not very efficient on multilayer samples. 20 keV C₆₀⁺ impacts enhance the yields significantly, especially for the relatively high molecular weight [M+H]⁺ ion.