14N NMR relaxation times of several protein amino acids in aqueous solution--comparison with 17O NMR data and estimation of the relative hydration numbers in the cationic and zwitterionic forms

The 14N nuclear magnetic resonance (NMR) linewidths of the alpha-amino groups of several protein amino acids were measured in aqueous solution, with and without composite proton decoupling, to estimate the effect of proton exchange and molecular weight on the linewidths. It is shown that, contrary to earlier claims, the increase in the linewidth at low pH is not exclusively due to the effect of proton exchange broadening. The 14N linewidths, under composite proton decoupling, increase with the bulk of the amino acid, and increase at low pH. Statistical treatment of the experimental 14N and literature 17O NMR data was performed assuming two models: (i) an isotropic molecular reorientation of a rigid sphere in a medium of viscosity eta, (ii) a stochastic diffusion of the amino and carboxyl groups comprising contributions from internal (tauint) and overall (taumol) motions. Assuming a single correlation time from overall molecular reorientation (taumol), then, a linear correlation was found between the linewidths and the molecular weights of the protein amino acids at the pH values 0.5 and 6.0, which are characteristic of the cationic and zwitterionic forms, respectively. The slopes of the straight-lines were found to be dependent of pH for 14N, contrary to the 17O linear correlations whose slopes were found to be independent of pH. Assuming effective correlation times of the amino and carboxyl groups, which comprise contributions from the internal (tauint) and overall (taumol) motions, then, a significant improvement of the statistics of the regression analysis was observed. The 14N relaxation data, in conjunction with 17O NMR linewidths, can be interpreted by assuming that the 14N quadrupole coupling constants (NQCCs) are influenced by the protonation state of the carboxyl group, the 17O NQCCs remain constant, and the cationic form of the amino acids is hydrated by an excess of 1-3 molecules of water relative to the zwitterionic state.     

Synthesis of a water-soluble fullerene [C60] under ultrasonication

A water-soluble fullerene [C60] is prepared with fullerene [C60] and a mixture of strong inorganic acids at the ratio (v/v) of 3:1 under ultrasonic condition at 25-43 degrees C. The MALDI-TOF MS and 13C-NMR spectra confirmed that the product of a water-soluble fullerene compound was C60.     

MUSIC and Aromatic Residues: Amino Acid Type-Selective H–N Correlations, III

Amino acid type-selective experiments can help to remove ambiguities in automated assignment procedures for ¹⁵N/¹³C-labeled proteins. Here we present five triple-resonance experiments that yield amino acid type-selective ¹H–¹⁵N correlations for aromatic amino acids. Four of the novel experiments are based on the MUSIC coherence transfer scheme that replaces the initial INEPT transfer and is selective for CH₂. The MUSIC sequence is combined with selective excitation pulses to create experiments for Trp (W-HSQC) as well as Phe, Tyr, and His (FYH-HSQC). In addition, an experiment selective for Trp H¹–N¹ is presented. The new experiments are recorded as two-dimensional experiments and their performance is demonstrated with the application to a protein domain of 115 amino acids.     

Determination of the effective correlation time modulating 1H NMR relaxation processes of bound water in protein solutions

The relaxation in protein solutions has mainly been studied by nuclear magnetic relaxation dispersion (NMRD) techniques. NMRD data have mostly been analyzed in terms of fast chemical exchange of water between free water and water bound to proteins. Several approaches were used for the estimation of correlation time modulating the relaxation mechanism of bound water. On the other hand, in a nuclear magnetic resonance experiment, the relaxation rates of protein solutions (1/T1 and 1/T2) and also those of free water (1/T1f and 1/T2f) are measurable. However, the relaxation rates of bound water (1/T1b and 1/T2b) are not. Despite this, equating (1/T1-1/T1f)/2(1/T2-1/T2f) to (1/T1b)/2(1/T2b) leads to an expression involving only an effective tau that is related to the rotational correlation time (tau r) of proteins. Equating the ratios may therefore give a simple alternative method for the determination of tau r even if this method is limited to a single resonance frequency. In this work, a formula was derived for the solution of the effective tau. Then, the 1/T1 and 1/T2 in solutions of two globular proteins (lysozyme and albumin) and one nonglobular protein (gamma-globulin) were measured for different amounts of each protein. Next, the values of 1/T1 and 1/T2 were plotted vs. protein concentrations, and then the slopes of the fits were used in the derived equation for determining the effective tau values. Finally, the rotational correlation time tau r, calculated from tau, was used in the Stokes-Einstein relation to reproduce relevant radii. The effective tau values of lysozyme, albumin and gamma-globulin were found to be 5.89 ns, 7.03 ns and 8.8 ns, respectively. tau r values of albumin and lysozyme produce their Stokes radii. The present data suggest that use of the measurable ratio in the derived formula may give a simple way for the determination of the correlation times of lysozyme and albumin.     

Design and construction of a versatile dual volume heteronuclear double resonance microcoil NMR probe

Improved NMR detection of mass limited samples can be obtained by taking advantage of the mass sensitivity of microcoil NMR, while throughput issues can be addressed using multiple, parallel sample detection coils. We present the design and construction of a double resonance 300-MHz dual volume microcoil NMR probe with thermally etched 440-nL detection volumes and fused silica transfer lines for high-throughput stopped-flow or flow-through sample analysis. Two orthogonal solenoidal detection coils and the novel use of shielded inductors allowed the construction of a probe with negligible radio-frequency cross talk. The probe was resonated at ¹H–²D (upper coil) and ¹H–¹³C (lower coil) frequencies such that it could perform 1D and 2D experiments with active locking frequency. The coils exhibited line widths of 0.8–1.1 Hz with good mass sensitivity for both ¹H and ¹³C NMR detection. ¹³C-directly detected ²D HETCOR spectra of 5% v/v ¹³C labeled acetic acid were obtained in less than 5 min. Demonstration of the probe characteristics as well as applications of the versatile two-coil double resonance probe are discussed.     

Relationships between Nitrogen Translocation and Accumulation in Growing Plant Parts of Grain Legumes

Abstract

Grain legumes absorbed mineral ¹⁵N at every stage of development and transported it directedly (just as symbiotically fixed ¹⁵N₂) into the plant parts growing at the respective stage. The ¹⁵N accumulation in the grains after long-lasting ¹⁵N supply can be ascribed, for the major part, to a secondary ¹⁵N translocation after a temporary incorporation into older plant parts (leaves, stem). Inhibition experiments with antibiotics revealed no direct relation between the accumulation of amino acid ¹⁵N in growing pods and seeds and the protein synthesis in this target organs. It may include, however, processes of (active ?) uptake and transport with a possible contribution of carrier systems specific for distinct amino acids.     

Derivation of O(3) Electrodynamics from the Irreducible Representations of the Einstein Group

By considering the irreducible representations of the Einstein group (the Lie group of general relativity), Sachs [1] has shown that the electromagnetic field tensor can be developed in terms of a metric q , which is a set of four quaternion-valued components of four-vector. Using this method, it is shown that the electromagnetic field vanishes [1] in flat spacetime, and that electromagnetism in general is a non-Abelian field theory. In this paper the non-Abelian component of the field tensor is developed to show the presence of the B ⁽³⁾ field of the O(3) electrodynamics, and the basic structure of O(3) electrodynamics is shown to be a sub-structure of general relativity as developed by Sachs. The extensive empirical evidence for both theories is summarized.     

13C direct detected COCO-TOCSY: a tool for sequence specific assignment and structure determination in protonless NMR experiments

A novel experiment is proposed to provide inter-residue sequential correlations among carbonyl spins in (13)C detected, protonless NMR experiments. The COCO-TOCSY experiment connects, in proteins, two carbonyls separated from each other by three, four or even five bonds. The quantitative analysis provides structural information on backbone dihedral angles phi as well as on the side chain dihedral angles of Asx and Glx residues. This is the first dihedral angle constraint that can be obtained via a protonless approach. About 75% of backbone carbonyls in Calbindin D(9K), a 75 amino acid dicalcium protein, could be sequentially connected via a COCO-TOCSY spectrum. 49 [Formula: see text] values were measured and related to backbone phi angles. Structural information can be extended to the side chain orientation of aminoacids containing carbonyl groups. Additionally, long range homonuclear coupling constants, (4)J(CC) and (5)J(CC), could be measured. This constitutes an unprecedented case for proteins of medium and small size.     

Changing the fragmentation pattern of molecules in helium nanodroplets by co-embedding with water

Individual amino acid molecules embedded in helium nanodroplets fragment extensively when the beam is ionized by electron bombardment. However, we find that when glycine and tryptophan are picked up right after, or right before, a small amount of water, the mass spectra become significantly altered. For glycine, the detected ions consist almost entirely of intact protonated amino acids, with or without a few water molecules attached. In other words, the presence of water exerts a striking “buffering” effect on the ionization-induced fragmentation. For tryptophan the effect is weaker but also present. In both cases, the hydroxyl group lost upon ionization overwhelmingly comes from the water partner (in strong contrast to the situation observed when amino acids are picked up by neat water clusters). A complementary experiment involving DCl molecules co-embedded with water shows that in this case Cl and/or DCl invariably leave the droplet upon ionization. The observed patterns may be steered by the analytes' dipole moments or by solvation effects.     

The BM5Se9 phases: Mössbauer studies of the superconductors and the ferromagnets

Syntheses performed in the A₃B/MSe₂ (A = Sb, Ga, Sn) (B = Nb, V, Ta) (M = V, Nb, Ta) systems lead to the formation of B(M/A)₅Se₉ phases which could be ferromagnets or superconductors. It has been shown that the presence of V modifies the superconducting exchanges and allows ferromagnetic couplings. Mössbauer spectroscopy of both ¹²¹Sb and ¹¹⁹Sn gives local electronic structure of the SbNb₅Se₉ superconductor and the Sn_0.94Ga_0.06V_0.30Nb_4.70Se₉ ferromagnet. For the latter compound, a complete study as a function of temperature is carried out showing that the Sn environment is not modified when the ferromagnetic transition occurs. The Debye temperature is calculated and compared to those obtained for other selenide compounds.     

Voltammetric behavior of perfluorocarboxylic acids and their corresponding ethyl esters on glassy carbon electrode: surface effects

Voltammetric responses of trifluoroacetic acid, perfluorobutyric acid, perfluorohexanoic acid, and perfluorooctanoic acid (PFOA) were studied in acetonitrile/tetra-n-butylammonium perchlorate medium on glassy carbon electrode. All the four acids gave two voltammetric waves. PFOA exhibits blocking effects. In the presence of excess water, the first cathodic peak current increases, and the second peak disappeared. Very small quantity of triethylamine (TEA; 1–2 mM) was found to be effective in suppressing the first cathodic peak. Both the peak current and peak potential values were sensitive to water and TEA content. The ester derivatives of all the four perfluorocarboxylic acids (PFCAs), however, gave well-defined cathodic reduction peak around −2.3 V. This peak appears to be the best choice for quantitative estimation of PFCAs.     

1H- and 13C-NMR Study of Some 6,7-Dihaloquinolone Nucleosides and Their Derivatives

The ¹H- and ¹³C-NMR spectra of 6,7-dihalo-1,4-dihydro-4-oxo-1-(2,3,5-tri-0-benzoyl-pβ-D-ribofuranosyl)quinoline-3-carboxylic acids (3), (4), the ester (3a), 6-chloro-1-(2-deoxy-3,5-di-O-tolouyl-α- and β-D-erythropentofuranosyl)-7-fluoro-1,4-dihydro-4-oxo-quinoline-3-carboxylic acid (5), and its free a-nucleoside (5a) have been investigated. Resonance signals were assigned by homo- and heteronuclear two dimensional NMR methods (DQF-COSY, HMQC, and HMBC) for (3), (4), (5), and (5a). Ribosylation sites and anomeric configurations were identified from ROESY spectra.     

Highly water resistant surface coating by fluoride on long persistent Sr4Al14O25:Eu/Dy phosphor

A novel and efficient method of providing moisture resistance of inorganic particles such as divalent europium activated strontium aluminate phosphors (Sr₄Al₁₄O₂₅:Eu²⁺/Dy³⁺) was developed by firing the phosphor in the presence of appropriate amount of ammonium fluoride at a temperature of 600-700 °C. Scanning electron microscopy, X-ray diffraction, FT-IR, EDAX and Photoluminescence measurements were carried out to characterize the uncoated and coated samples. The pH measurements were carried out for the water resistivity measurements. The phosphor particles became coated with a moisture-impervious thin coating that did not suppress the luminescence of the phosphor and can withstand complete immersion in water for long periods of time, showing very high water resistivity.     

An NMR study of the origin of dioxygen-induced spin-lattice relaxation enhancement and chemical shift perturbation

Due to its depth-dependent solubility, oxygen exerts paramagnetic effects which become progressively greater toward the hydrophobic interior of micelles, and lipid bilayer membranes. This paramagnetic gradient, which is manifested as contact shift perturbations (19F and 13C NMR) and spin-lattice relaxation enhancement (19F and 1H NMR), has been shown to be useful for precisely determining immersion depth, membrane protein secondary structure, and overall topology of membrane proteins. We have investigated the influence of oxygen on 19F and 13C NMR spectra and spin-lattice relaxation rates of a semiperfluorinated detergent, (8,8,8)-trifluoro (3,3,4,4,5,5,6,6,7,7)-difluoro octylmaltoside (TFOM) in a model membrane system, to determine the dominant paramagnetic spin-lattice relaxation and shift-perturbation mechanism. Based on the ratio of paramagnetic spin-lattice relaxation rates of 19F and directly bonded 13C nuclei, we conclude that the dominant relaxation mechanism must be dipolar. Furthermore, the temperature dependence of oxygen-induced chemical shift perturbations in 9F NMR spectra suggests a contact interaction is the dominant shift mechanism. The respective hyperfine coupling constants for 19F and 13C nuclei can then be estimated from the contact shifts <(deltav/v0)19F> and <(deltav/v0)13C>, allowing us to estimate the relative contribution of scalar and dipolar relaxation to 19F and 13C nuclei. We conclude that the contribution to spin-lattice relaxation from the oxygen induced paramagnetic scalar mechanism is negligible.     

The Influence of the Auxiliary Water and of Nitric Acid Flow-Rate about 15N Separation in Nitrox System

The experimental results obtained for ¹⁵N separation by Spindel-Taylor [1] method, in a laboratory exchange column [2] are presented. The influence of the auxiliary water flow and of the nitric acid flow-rate (0.6–2.6 ml/cm² min) on the ¹⁵N separation has been stuided. All the experimental points were obtained in unsteady state, thus giving information about the rate of the steady state achievement.     

1H-MRS of the macaque monkey primary visual cortex at 7 T: strategies and pitfalls of shimming at the brain surface

Magnetic resonance spectroscopy (MRS) is ideally suited for physiology-neurochemistry experiments with the living brain and particularly for studies on the primary visual cortex (striate cortex or area V1). Yet, the highly convoluted form of the human V1 has thus far prevented the performance of MRS investigations that are spatially confined within the gray matter of this area. Typically, these studies are compromised by partial volume contaminations originating from white matter tissue, cerebrospinal fluid and other cortical areas. In this study, was exploited the relative flatness of V1 in macaques to enable single-voxel 1H-MRS from a small volume (5 x 1.6 x 5 mm3, 40 microl) that was entirely confined within the V1 gray matter of anesthetized monkeys. Linewidths of 13.5+/-1.9 Hz and 13.0+/-1.3 Hz for water and creatine, respectively, were achieved with a two-step shimming strategy for voxels at the brain surface. The quality of the obtained results paves the way for further neuroscientific research, including studies on the cortical microcircuits and the dynamic longitudinal changes occurring during cortical reorganization and plasticity.     

Convenient Synthesis 1H, 13C NMR Study and X-Ray Crystal Structure Determination of Some New Disubstituted Thiophenes

2,5-, 3,4- and 2,3-Thienylenediacrylic (1, 4 and 7 respectively) were synthesized in one step reaction by catalytic vinylation of the corresponding dibromothiophenes in the presence of cyclohexylamine salt of acrylic acid. 2,4-Thienylenediacrylic acid 10 was prepared by catalytic vinylation of 3-(4-bromo-2-thienyl)acryilic acid.