Optimization of the Water-PRESS Pulse Sequence and Its Integration into Pulse Sequences for Studying Biological Macromolecules

In this paper, the recently developed “Water-PRESS” method of water suppression [W. S. Price and Y. Arata (1996),J. Magn. Reson. B112,190] in which homospoil pulses are used to manipulate the effects of radiation damping on the water resonance and thereby selectively alter the effective relaxation times of the water resonance with respect to the solute (e.g., biological macromolecules) resonances is further developed and applied. In the present work, methods for optimization in terms of degree of water suppression and in temporal terms (important for the application of Water-PRESS to multidimensional experiments) are considered so that recycle delays of less than 2.3 s (including the acquisition time) are possible. Also, a simple modification which allows the observation of solute resonances with relaxation times similar to that of the water resonance is presented. Finally, the inclusion into more complicated pulse sequences is also discussed. Experimental examples using aqueous samples of lysozyme and immunoglobulin are given. Compared to most other NMR water suppression techniques, this method is extremely simple to implement and optimize and does not require accurately calibrated RF pulses or perfect lineshape.     

Characterization and Suppression Techniques for Degree of Radiation Damping in Inversion Recovery Measurements

Radiation damping is a phenomenon in which transverse nuclear magnetization couples with the current in a coil used in nuclear magnetic resonance experiments. This results in an additional magnetic field that increases the relaxation pathway for the magnetization, which then relaxes back to equilibrium more quickly. Radiation damping has been shown to affect longitudinal relaxation time (T₁) measurement in inversion recovery experiments. In this work, we demonstrate that the extent of radiation damping depends upon the T₁ of the sample. Radiation damping difference spectroscopy is used to characterize the severity of radiation damping, while gradient inversion recovery is used for radiation damping suppression in T₁ measurements. At field strength of 9.4 T, for the radiation damping characteristic time (T_rd) of 50 ms, these investigations show non-negligible radiation damping effects for T₁ values greater than T_rd, with severe distortions for T₁ longer than about 150 ms, showing reasonable agreement with the predicted T_rd. We also report a discrepancy between published expressions for the characteristic radiation damping time.     

Stereochemical Assignment of Tertiary Hydroxyl Group in Diterpene Furan Glycosides by Pyridine Induced Shifts, 13C- and 2D-NMR Spectroscopy

The stereochemistry of the tertiary hydroxyl group in diterpene furan glycosides viz. cordifolisides D (1) and cordifoliside E (2) has been assigned on the basis of pyridine solvent induced shifts (PIS) in the ¹H and ¹³C NMR spectra. The methyl and the methylene groups occupying positions vicinal, 1,3-diaxial and geminal to the tertiary hydroxyl group were deshielded to different extent depending on the dihedral angle. The stereochemical assignments are well supported by ¹³C-γ shifts and 2D Overhauser spectroscopy.     

Computational (solute–solvent cluster + PCM) study of medium effects on the experimental 13C and 1H NMR chemical shifts of lactones and lactams

Solvent effects on the ¹H and ¹³C NMR chemical shifts of some lactones: β‐propiolactone, γ‐butyrolactone, δ‐valerolactone and ε‐caprolactone, as well as lactams: azetidin‐2‐one, pyrrolidin‐2‐one, δ‐valerolactam and ε‐caprolactam have been investigated and discussed in a wide range of solvents. The experimental results were compared with density functional calculations using a large basis set. Solvent effects were computed by means of an integrated approach including the polarizable continuum model and an optimum number of explicit solvent molecules surrounding the solute. The agreement between computed and experimental chemical shifts fully validates our integrated approach. In order to quantify and elucidate the origin of the solvent effects on the ¹H and ¹³C chemical shifts of the selected compounds, a multi‐linear regression analysis has been carried out using the empirical Kamlet–Abboud–Taft solvatochromic parameters. It has been found that there is a good correlation between the solvent‐induced chemical shifts of ¹³C and the π* scale of solvent dipolarity polarizability. ¹H chemical shifts are affected mainly by the dipolarity–polarizability and the basicity of the solvent. An excellent agreement has been obtained between the calculated and the experimental data. Copyright © 2011 John Wiley & Sons, Ltd.     

基于WATERGATE的双溶剂峰抑制方法

WATERGATE（W3/W5）是NMR实验中使用较为广泛的溶剂峰抑制方法,但该方法通常仅能对一个溶剂信号进行有效抑制. 本文对WATERGATE的脉冲序列进行修饰、优化,发展了两种新的双溶剂峰抑制方法. 实验结果表明,经过修饰、优化后的WATERGATE,实验的设立非常简单,不需要复杂的优化过程就能够对双（多）溶剂峰进行有效抑制, 可用于常规1D & 2D NMR 实验、HPLC NMR实验,以及天然产物粗提取物的分析中.     

A C solid-state NMR analysis of vitamin D compounds

¹³C cross-polarization/magic-angle spinning (CP/MAS) solid-state NMR spectroscopy has been employed to analyze four vitamin D compounds, namely vitamin D3 (D3), vitamin D2 (D2), and the precursors ergosterol (Erg) and 7-dehydrocholesterol (7DHC). The ¹³C NMR spectrum of D3 displays a doublet pattern for each of the carbon atoms, while that of Erg contains both singlet and doublet patterns. In the cases of 7DHC and D2, the ¹³C spectra display various multiplet patterns, viz. singlets, doublets, triplets, and quartets. To overcome the signal overlap between the ¹³C resonances of protonated and unprotonated carbons, we have subjected these vitamin D compounds to 1D ¹H-filtered ¹³C CP/MAS and {¹H}/¹³C heteronuclear correlation (Hetcor) NMR experiments. As a result, assisted by solution NMR data, all of the ¹³C resonances have been successfully assigned to the respective carbon atoms of these vitamin D compounds. The ¹³C multiplets are interpreted due to the presence of s-cis and s-trans configurations in the α- and β-molecular conformers, consistent with computer molecular modeling determined by molecular dynamics and energy minimization calculations. To further characterize the ring conformations in D3, we have successfully extracted chemical shift tensor elements for the ¹³C doublets. It is demonstrated that ¹³C solid-state NMR spectroscopy provides a robust and high sensitive means of characterizing molecular conformations in vitamin D compounds.     

Nearly 10-fold enhancements in intermolecular H double-quantum NMR experiments by nuclear hyperpolarization

Intermolecular Multiple-Quantum Coherences (iMQCs) can yield interesting NMR information of high potential usefulness in spectroscopy and imaging – provided their associated sensitivity limitations can be overcome. A recent study demonstrated that ex situ dynamic nuclear polarization (DNP) could assist in overcoming sensitivity problems for iMQC-based experiments on ¹³C nuclei. In the present work we show that a similar approach is possible when targeting the protons of a hyperpolarized solvent. It was found that although the DNP procedure enhances single-quantum ¹H signals by about 600, which is significantly less than in optimized low-γ liquid-state counterparts, the non-linear dependence of iMQC-derived signals on polarization can yield very large enhancements approaching 10⁶. Cleary no practical amount of data averaging can match this kind of sensitivity gains. The fact that DNP endows iMQC-based ¹H NMR spectra with a sensitivity that amply exceeds that of their thermally polarized single-quantum counterpart, is confirmed in a number of simple single-scan 2D imaging experiments.     

A localization method for the measurement of fast relaxing13C NMR signals in humans at high magnetic fields

Nuclear magnetic resonance (NMR) signals with shortT ₁ andT ₂, such as the¹³C signal of glycogen, are difficult to localize in three dimensions without major signal loss. A pulse sequence that accomplishes the spatial localization of¹H-decoupled¹³C NMR signals on a whole-body scanner within the Food and Drug Administration guidelines for specific absorption rates was designed. The method uses an optimized three-dimensional outer volume suppression scheme combined with one-dimensional image-selected in vivo spectroscopy and surface coil detection. The localization performance of the sequence was validated at 4 T with double chambered phantoms and¹³C magnetic resonance imaging. Localized¹³C spectra were acquired from human brain and muscle.     

Solvent Suppression in High-Resolution 1H NMR Spectroscopy Using Conventional and Phase Alternated Continuous Wave Free Precession

Solvent suppression is frequently mandatory in ¹H high-resolution nuclear magnetic resonance (NMR), especially for those experiments designed for non-deuterated solvent, normally used in protein and in vivo analysis, and also in liquid chromatography-NMR. Here, simple pulse sequences, which are based on continuous wave free precession (CWFP), consisting of a train of pulses separated by a time interval $ T_{\text{p}} \ll T_{2}^{*} $ , is applied to suppress one or more solvent signals in ¹H high-resolution NMR experiments, because of its dependency on the offset frequency. The conventional CWFP pulse sequence, that uses pulses with the same phase and duration, introduces some phase anomaly in the Fourier-transformed spectrum. This problem is minimized when the pulses are applied with phase alternation by π/2 in relation to the preceding pulse. Some problems with signal intensity can also be minimized using a shorter pulse width. Both CWFP and phase alternated CWFP can be easily used to suppress two solvent signals simultaneously, just using the correct T _p value, that must be equal to the inverse of frequency difference (?ν) between both signals to be suppressed. After modifications, we could introduce the CWFP train into 2D routine pulse sequences.     

Origin of significant solvent effects on 1J(CC) spin–spin coupling in some acetylenes: hydrogen bonding and solvent polarity

It is demonstrated that some acetylenes, those of the R? C?CH structure, display anomalously high sensitivity to solvent effects of their ¹J(C?C) coupling while R? C?CR acetylenes fail to show that. The solvent‐induced variation in the latter coupling does not exceed 3 Hz; this seems to be the upper limit of variation of any J(CC) and J(CH) coupling in the molecular system studied which included: acetylene (in 13 solvents), phenylacetylene (in 12 solvents), 1‐phenylpropyne, and 2‐hexyne (two solvents each), and the only exceptions are ¹J(C?C) in acetylene, which is shown to vary within about 13 Hz, and that in phenylacetylene where the range amounts to about 8 Hz. These apparent anomalies are explained in the present study in terms of two effects of prime importance, solvent polarity and the solute‐to‐solvent hydrogen bonds where the CH moiety in R? C?CH acetylenes acts as a donor of hydrogen bonds to acceptor sites in the solvent concerned. Copyright © 2009 John Wiley & Sons, Ltd.     

A heteronuclear intermolecular single-quantum coherence scheme for high-resolution 2D J-resolved 1H NMR spectra in inhomogeneous magnetic fields

Based on heteronuclear intermolecular single-quantum coherences between proton (¹H) and quadrupolar nuclei (i.e. deuterium ²H), a three-dimensional nuclear magnetic resonance (NMR) pulse sequence is proposed for recovering high-resolution two-dimensional J-resolved NMR spectra from samples mixed with a deuterated solvent in the presence of large magnetic field inhomogeneities. Benefitting from excitation of spins via two different radio frequency (RF) transmit channels, this sequence is suitable for applications in randomly large inhomogeneous fields and the solvent suppression generally required in homonuclear intermolecular multiple-quantum coherence approaches is no longer necessary. Systematic theoretical analyses are given based on the distant dipolar field treatment. Experiment on a sample of corn oil in deuterated acetone and ethyl 3-bromopropionate and acetone dissolved in DMSO-d₆ in a deshimmed field with severe inhomogeneous broadening is performed to show the feasibility and applicability of this sequence.     

Test of a method for sampling the internal degrees of freedom of a flexible solute molecule based on adiabatic decoupling and temperature or force scaling

Simulation of the folding equilibrium of a polypeptide in solution is a computational challenge. Standard molecular dynamics (MD) simulations of such systems cover hundreds of nanoseconds, which is barely sufficient to obtain converged ensemble averages for properties that depend both on folded and unfolded peptide conformations. If one is not interested in dynamical properties of the solute, techniques to enhance the conformational sampling can be used to obtain the equilibrium properties more efficiently. Here the effect on particular equilibrium properties at 298?K of adiabatically decoupling the motion a β-hepta-peptide from the motion of the solvent and subsequently up-scaling its temperature or down-scaling the forces acting on it is investigated. The ensemble averages and rate of convergence are compared to those for standard MD simulations at two different temperatures and a simulation in which the temperature of the solute is increased to 340?K while keeping the solvent at 298?K. Adiabatic decoupling with a solute mass scaling factor s _m ?=?100 and a temperature scaling factor of s _T ?=?1.1 seems to slightly increase the convergence of several properties such as enthalpy of folding, NMR NOE atom–atom distances and ³J-couplings compared to a standard MD simulation at 298?K. Convergence is still slower than that observed at 340?K. The system with a temperature of 340?K for the solute and 298?K for the solvent without scaling of the mass converges fastest. Using a force scaling factor s _V ?=?0.909 perturbs the system too much and leads to a destabilization of the folded structure. The sampling efficiency and possible distortive effects on the configurational distribution of the solute degrees of freedom due to adiabatic decoupling and temperature or force scaling are also analysed for a simpler model, a dichloroethane molecule in water. It appears that an up-scaling of the mass of the solute reduces the sampling more than the subsequent up-scaling of the temperature or down-scaling of the force enhances it. This means that adiabatic decoupling the solute degrees of freedom from the solvent ones followed by an up-scaling of temperature of down-scaling of the forces does not lead to significantly enhanced sampling of the folding equilibrium.     

Anilinolysis of O‐butyl phenyl phosphonochloridothioate in acetonitrile: Synthesis,characterization, kinetic study,and reaction mechanism

This paper describes a simple optimized method for the synthesis of O‐butyl phenyl phosphonochloridothioate ( 4 ) under mild conditions. The target compounds were characterized by ¹H‐nuclear magnetic resonance (NMR), ¹³C‐NMR, and ³¹P‐NMR spectroscopy, as well as mass spectroscopy. The apparent structure of 4 was confirmed by optimization using the B3LYP/6‐311 + G(d,p) level in the Gaussian 09 program in acetonitrile. The nucleophilic substitution reactions of 4 with X‐anilines (XC₆H₄NH₂) and deuterated X‐anilines (XC₆H₄ND₂) were investigated kinetically in acetonitrile at 55.0°C. The free energy relationship with X in the anilines looked biphasic concave upwards with a break region between X = H and X = 3‐MeO, giving large negative ρ_X and small positive β_X values. The deuterium kinetic isotope effects were secondary inverse (k_H/k_D < 1: 0.789‐0.995) and the magnitudes, (k_H/k_D), increased when the nucleophiles were changed from weakly basic to strongly basic anilines. A concerted S_N2 mechanism is proposed on the basis of the selectivity parameters and the variation trend of the deuterium kinetic isotope effects with X.     

NMR and DFT calculation study on structures of 2‐[2‐nitro‐4‐(trifluoromethyl)benzoyl]cyclohexane‐1,3‐dione (NTBC) and its two metabolites isolated from urine of patients suffering from tyrosinemia type I

2‐[2‐Nitro‐4‐(trifluoromethyl)benzoyl]cyclohexane‐1,3‐dione (NTBC) is an active component of nitisinone, a medicine against tyrosinemia type I. Using ¹H, ¹³C and ¹⁹F NMR spectroscopy it has been found that in the urine of patients treated with nitisinone two compounds possessing CF₃ group are always present. They have been isolated by using TLC technique and identified as 4‐hydroxy‐2‐[2‐nitro‐4‐(trifluoromethyl)benzoyl]cyclohexane‐1,3‐dione and 5‐hydroxy‐2‐[2‐nitro‐4‐(trifluoromethyl)benzoyl]cyclohexane‐1,3‐dione, the latter being previously unknown. The constitution, tautomerism and stereochemistry of these compounds have been thoroughly investigated using ¹H and ¹³C NMR spectroscopy supported by theoretical calculations. Molecular structures have been optimized using density functional theory (DFT) with PBE1PBE functional and 6‐31G* basis set. In NMR parameter calculations, the larger 6‐311++G(2d,p) basis set has been used. At both calculation stages, the polarizable continuum model of the solvent has been employed. Copyright © 2010 John Wiley & Sons, Ltd.     

三种缩水蔗糖衍生物的NMR研究及结构确证

采用¹H NMR、¹³C NMR、DEPT及二维谱¹H-¹H COSY、HSQC、HMBC和HRMS对1′, 4′∶3′, 6′-二缩水-4-氯-4-脱氧半乳蔗糖、3, 6∶1′, 4′3′, 6′-三缩水-4-氯-4-脱氧半乳蔗糖和3, 6-缩水-4, 1′, 6′-三氯-4, 1′, 6′-三脱氧半乳蔗糖的结构进行了研究和确证,并对它们的¹H、¹³C NMR全谱给予了准确归属.     

Infrared Spectra of Water in Aqueous Solutions Using Internal Reflection Spectroscopy

Abstract

There has been a continuing interest in the structure of water and of aqueous solutions, and many studies have employed spectroscopic techniques. These have frequently involved absorption spectroscopy in the near-IR range, and Raman scattering. In general, however, the normal IR range has been but little used except for studies of HDO-containing solutions, and the region near 3500 cm^?1 of the intense H₂O absorption has been almost completely avoided. Transmission techniques have been exclusively employed with absorption spectroscopy. Internal reflection spectroscopy (IRS) techniques have been employed to examine aqueous solutions, but the emphasis was placed on studying the solute rather than the solvent. Also, the solute concentrations which had been employed in transmission studies have been rather high. We now suggest the feasibility of carrying out structural studies of aqueous solutions by using IRS techniques to record spectra in the IR range, employing solutions of relatively low concentrations. For example, the lowest concentration of aqueous HCl solution examined by Ackermann¹ was 2.5 M by transmission techniques in the 4000-1100 cm^?1 range; in contrast, using IRS, the perturbations of the O-H stretching and deformation bands of H₂O could be observed with 0.1 M HCl.     

<Superscript>1</Superscript>H and<Superscript>13</Superscript>C chemical shift assignments and stereochemistry of matrine and oxymatrine

Matrine and oxymatrine were extracted fromSophora flavescens, and their¹H and¹³C nuclear magnetic resonances (NMR) were unambiguously assigned by a combination of different two-dimensional 2-D¹H-¹³C and¹H-¹H correlation experiments of HMQC, HMQC-TOCSY and MAXY. The technique of using those experiments to make the assignment of the heavily overlapped spectrum is demonstrated. The coupling constants of matrine were measured by 2-DJ-resolved spectrum and 1-D spectra extracted from the slices of 2-D MAXY spectrum. The stereochemistry of the titled compounds was established from the NMR spectroscopy.     

Methodology of1H NMR spectroscopy of the human brain at very high magnetic fields

An ultrashort-echo-time stimulated echo-acquisition mode (STEAM) pulse sequence with interleaved outer volume suppression and VAPOR (variable power and optimized relaxation delays) water suppression was redesigned and optimized for human applications at 4 and 7 T, taking into account the specific requirements for spectroscopy at high magnetic fields and limitations of currently available hardware. In combination with automatic shimming, automated parameter adjustments and data processing, this method provided a user-friendly tool for routine¹H nuclear magnetic resonance (NMR) spectroscopy of the human brain at very high magnetic fields. Effects of first- and second-order shimming, single-scan averaging, frequency and phase corrections, and eddy currents were described. LCModel analysis of an in vivo¹H NMR spectrum measured from the human brain at 7 T allowed reliable quantification of more than fifteen metabolites noninvasively, illustrating the potential of high-field NMR spectroscopy. Examples of spectroscopic studies performed at 4 and 7 T demonstrated the high reproducibility of acquired spectra quality.     

Solubility of caffeine in the supercritical CO<Subscript>2</Subscript>–methanol binary solvent

The caffeine–methanol association constant at 313 K has been determined by ¹H NMR spectroscopy. The caffeine solubility in the supercritical carbon dioxide (SC-CO₂)–methanol mixed solvent has been calculated using the association constant experimentally measured by NMR in the framework of the associated solution + lattice (ASL) model, which is based on the theory of molecular association and a simple lattice model. Individual contributions to the solubility have been determined, and the relative role of various factors determining the solubility of caffeine in the mixed solvent has been analyzed. The caffeine solubility as a function of the methanol content of the SC-CO₂–methanol system is predicted to pass through a maximum.