Intramolecular hydrogen bonds and antioxidant activity of aminophenols

We have used IR Fourier spectroscopy to study intramolecular interactions in solutions of aminophenols in n-hexane. When the hydroxyl group in the molecule is ortho to the amino group, O-H⋯N and N-H⋯O intramolecular hydrogen bonds are formed in the aminophenols. Adding two tert-butyl groups to the benzene ring of ortho-aminophenols strengthens the O-H⋯N bond in the molecules, and prevents formation of an N-H⋯O bond. Additional acylation of the amino group in ortho-aminophenols leads to formation of an O-H⋯O=C intramolecular hydrogen bond. Formation of the above-indicated intramolecular hydrogen bonds in aminophenols affects the course of radiation-induced reactions occurring in n-hexane with participation of these compounds. The antioxidant properties of the aminophenols are enhanced when the hydroxyl groups in the molecules are found in the free state, and are diminished when strong O-H⋯N or O-H⋯O=C intramolecular hydrogen bonds are formed. __________ Translated from Zhurnal Prikladnoi Spektroskopii, Vol. 74, No. 5, pp. 577–582, September–October, 2007.     

Spectroscopic properties of pharmacologically active phenols

The IR Fourier-transform spectra of pharmacologically active phenol molecules in solutions in CCl₄ and in the crystalline state have been studied. Phenol derivatives with different directivities and different levels of pharmacological efficiency have been examined. Based on analysis of the IR spectra of screened phenols, the antimicrobial activity of phenols with free hydroxyl groups has been shown to be highest. The high antimicrobial activity of aminophenols is related to the formation of intramolecular hydrogen bonds. For aminophenols that are active against herpesviruses, O-H...N hydrogen bonds are formed in molecules. The main characteristic of the high antiviral activity against A-type influenza is predominance of intramolecular hydrogen bonds of the O-H...O=C type in molecules. Sulfur-containing aminophenols, which manifest activity against HIV infection, are characterized by the occurrence of hydrogen bonds that involve the participation of the OH, NH, and SO₂ groups.     

Intramolecular and intermolecular hydrogen bonds in aminophenols

IR-Fourier spectroscopy methods are adopted to study intramolecular and intermolecular hydrogen bonds that form in CCl₄ solutions of aminophenol derivatives and in a solid phase of these compounds pressed in KBr. If a hydroxyl group is present in the molecule in the ortho-position to an amino group, then intramolecular interactions between OH and NH groups will take place in aminophenol solutions. Intramolecular O–H⋅⋅⋅O=S=O and N–H⋅⋅⋅O=S=O hydrogen bonds are found in solutions of compounds containing a sulfonamide fragment. Additional acylation of the amino group causes an intramolecular O–H⋅⋅⋅O=C hydrogen bond to form in solutions. Functional groups OH, NH, SO₂, and C=O interact with one another in various ways in the solid phase to form intermolecular hydrogen bonds in aminophenols.     

Hydrogen bonds of anti-HIV active aminophenols

Analysis of IR-Fourier spectra from solutions and crystals of antiviral sulfo-containing aminophenols has shown that various types of intramolecular and intermolecular interactions can occur in molecules of these compounds. Three types of intramolecular hydrogen bonds (O–H⋅⋅⋅N, O–H⋅⋅⋅O=S=O, and N–H⋅⋅⋅O=S=O) are formed in CCl₄ solutions of the sulfo-containing aminophenols. The formation of intermolecular H-bonds involving the NH- and OH-groups and the preservation of the intramolecular O–H⋅⋅⋅O=S=O H-bond are characteristic of the anti-HIV active aminophenol crystals. Spectral attributes are determined in order to distinguish between the anti-HIV active and inactive sulfo-containing aminophenols.     

Intramolecular hydrogen bonds in the phenylazomethine biomolecules

The FTIR spectra of the solutions of biologically active molecules (screened phenylazomethines) in CCl₄ are studied. The role of the OH- and N=C groups in the formation of the intramolecular H bonds is analyzed. The analysis of the FTIR spectra shows that three types of H bonds (O-H…O-H, O-H…N=C, and O-H…O-H…N=C) are possible in the molecules under study. A correlation of the H-bond formation in the phenylazomethine molecules and the antivirus properties of such molecules is revealed. The antivirus activity is observed for molecules that exhibit intramolecular O-H…O-H…N=C bonds in the absence of free hydroxyls. The antivirus activity decreases when the molecule contains additional OH groups that are not involved in H bonds.     

Time-dependent density functional theory study on excited state intramolecular proton transfer of 3-hydroxy-2-(pyridin-2-yl)-4H-chromen-4-one

The time-dependent density functional theory (TDDFT) method was carried out to investigate the excited state intramolecular proton transfer (ESIPT) process of 3-hydroxy-2-(pyridin-2-yl)-4H-chromen-4-one (1a). 1a has two tautomeric forms: one is 1a(O), which is induced by intramolecular hydrogen bond O-H?O=C, and the other one is 1a(N), which is caused by intramolecular hydrogen bond O-H?N. From excited state to tautomer excited state coming from ESIPT, the hydroxyl hydrogen breaks away and the dissociated hydrogen adsorbed on pyridinic nitrogen or carbonyl oxygen formed new intramolecular HB and the corresponding bond length and bond angle varied greatly. In comparison, a similar process of proton transfer for 1a(N)H⁺ protonated 1a(N) from ground state to excited state was obtained. This detailed proton transfer mechanism was provided by molecular orbitals analysis and it may be applied to molecular switch and organic Lewis acid/base. We investigated the excited state proton transfer mechanism of the four molecules through the theoretical method for the first time and gave unambiguous geometry of excited state.     

Intramolecular hydrogen bonds in sulfur-containing aminophenols

IR Fourier spectroscopy methods have been adopted to study intramolecular interactions that occur in CCl₄ solutions of antiviral derivatives of aminophenol. Analysis of the IR spectra showed that intramolecular bonds O–H···N, O–H···O=C, N–H···O=S=O, and O–H···O=S=O can occur in these compounds depending on the substituent on the amino group. Not only the presence of intramolecular O–H···N, O–H···O=S=O, and N– H···O=S=O hydrogen bonds in 2-amino-4,6-di-tert-butylphenol derivatives containing a sulfonamide fragment but also conformational equilibrium among these types of intramolecular interactions are essential for the manifestation of high efficiency in suppressing HIV-infection in cell culture.     

IR spectra of benzaldehyde and its derivatives in different aggregate states

We have measured the IR Fourier-transform spectra of biologically active benzaldehyde and its derivatives in the gas and liquid phases. For compounds of this class, the role played by C=O, OH, and CH groups in intra- and intermolecular has been analyzed. We have revealed spectral features that characterize the participation of C=O groups of unsubstituted benzaldehyde molecules in the occurrence of intermolecular hydrogen bonds C=O...H-C with the formation of molecular dimers of different types. For 2-hydroxybenzaldehyde molecules, spectral data have been obtained that are indicative of the occurrence of intramolecular hydrogen bonds of the C=O...H-C type in solutions. In 2-methoxybenzaldehyde molecules, no intramolecular hydrogen bonds have been observed.     

Complexation-induced chemical shifts--ab initio parameterization of transferable bond anisotropies

Complexation-induced changes in proton chemical shifts provide a potent tool for conformational analysis, being highly dependent on intermolecular orientation. An important contribution to these shifts arises from the molecular magnetisability anisotropy, or more specifically from the anisotropy of certain groups, such as aromatic rings and unsaturated bonds. While the influence of aromatic rings has been well characterised via the ring current effect, unsaturated bonds have received much less attention and prediction of complexation shifts is hampered by the lack of accurate anisotropy parameters for these bonds. We have therefore used ab initio calculations at the HF/aug-cc-pVDZ level to obtain bond anisotropies for C-H, N-H, C=O, C=C, C triple bond N, N=N, C triple bond C, and C triple bond N. Fitting the anisotropies to bond magnetic dipoles (the McConnell equation) gives non-transferable values for C-H and N-H bonds. We have therefore expanded in terms of bond magnetic dipoles, quadrupoles, and octopoles for double and triple bonds only, obtaining highly accurate shielding surfaces in all cases. The transferable nature of the anisotropies is confirmed by comparing with shifts obtained in larger molecules containing unsaturated bonds.     

Ramsey terms for two-, three-, and four-bond coupling involving 15N and 17O in hydrogen-bonded and nonhydrogen-bonded systems: are coupling constants sensitive to RAHBs?

Ab initio EOM-CCSD/(qzp,qz2p) calculations have been performed on complexes with intermolecular hydrogen bonds involving ¹⁵N and ¹⁷O, and molecules with and without intramolecular hydrogen bonds involving these nuclei. Coupling constants across intermolecular hydrogen bonds are well approximated by the Fermi-contact (FC) term. In general, ^2hJ(X–Y) for intramolecular coupling across X–H^…Y hydrogen bonds are not sensitive to the presence of resonance-assisted hydrogen bonds (RAHBs). However, ^2hJ(O–O) for coupling across the intramolecular hydrogen bond in malonaldehyde is greater than ^2hJ(O–O) for its saturated counterpart, so that ^2hJ(O–O) is sensitive to the presence of the RAHB. This is also the case for the sulphur analogues of malonaldehyde. For these unsaturated hydrogen-bonded molecules, molecules with carboxyl groups, and trans-glyoxal, J is dominated by the paramagnetic spin orbit (PSO) term. For these systems, the primary mode of coupling transmission is through the conjugated chain. For complexes with intermolecular hydrogen bonds, saturated molecules with intramolecular hydrogen bonds, unsaturated and saturated molecules in which the hydrogen bond has been broken, and unsaturated molecules with intramolecular N–H^…N or O–H^…N hydrogen bonds, J is dominated by the FC term. FC domination in hydrogen-bonded systems indicates that the primary transmission mode is across the hydrogen bond.     

How universal are hydrogen bond correlations? A density functional study of intramolecular hydrogen bonding in low-energy conformers of α-amino acids

Hydrogen bonding is one of the most important and ubiquitous interactions present in Nature. Several studies have attempted to characterise and understand the nature of this very basic interaction. These include both experimental and theoretical investigations of different types of chemical compounds, as well as systems subjected to high pressure. The O–H..O bond is of course the best studied hydrogen bond, and most studies have concentrated on intermolecular hydrogen bonding in solids and liquids. In this paper, we analyse and characterise normal hydrogen bonding of the general type, D–H...A, in intramolecular hydrogen bonding interactions. Using a first-principles density functional theory approach, we investigate low energy conformers of the twenty α-amino acids. Within these conformers, several different types of intramolecular hydrogen bonds are identified. The hydrogen bond within a given conformer occurs between two molecular groups, either both within the backbone itself, or one in the backbone and one in the side chain. In a few conformers, more than one (type of) hydrogen bond is seen to occur.

Interestingly, the strength of the hydrogen bonds in the amino acids spans quite a large range, from weak to strong. The signature of hydrogen bonding in these molecules, as reflected in their theoretical vibrational spectra, is analysed. With the new first-principles data from 51 hydrogen bonds, various parameters relating to the hydrogen bond, such as hydrogen bond length, hydrogen bond angle, bond length and vibrational frequencies are studied. Interestingly, the correlation between these parameters in these bonds is found to be in consonance with those obtained in earlier experimental studies of normal hydrogen bonds on vastly different systems. Our study provides some of the most detailed first-principles support, and the first involving vibrational frequencies, for the universality of hydrogen bond correlations in materials.     

(1)H-(17)O nuclear-quadrupole double-resonance study of hydrogen disorder in 2-nitrobenzoic acid

Temperature dependence of (17)O nuclear quadrupole resonance frequencies was measured in solid 2-nitrobenzoic acid by a (1)H-(17)O nuclear quadrupole double resonance technique. The experimental results show the presence of a fast exchange of hydrogen atoms between two nonequivalent positions within the O-H ellipsis O hydrogen bonds. The hydrogen disorder is ascribed to concerted jumps of two hydrogen atoms within the hydrogen bonds connecting two molecules in a dimer. The energy difference DeltaE of the two hydrogen configurations is equal to DeltaE = 60 meV = 5.8 kJ/mol. The dipole structure of the (17)O NQR lines from the C-O-H oxygen positions was also measured at -100 degrees C and at room temperature. The orientation of the principal axes of the electric field gradient tensor with respect to the O-H bond and the sign of the quadrupole coupling constant were determined. The oxygen-hydrogen distance R(O-H), as determined from the dipole structure of the (17)O NQR lines is at -100 degrees C equal to 0.099 nm. At room temperature we observe a longer distance, R(O-H) = 0.101 nm, in agreement with the hydrogen intrabond exchange.     

Manifestation of intramolecular and intermolecular interactions in infrared absorption spectra of biologically active aminophenols

FTIR methods were used to study intramolecular and intermolecular interactions in solutions and the solid state of the biologically active aminophenols 2-anilino-4,6-di-tert-butylphenol, N-(3,5-di-tert-butyl-2-methoxyphenyl)aniline, and 2,4-di-tert-butyl-10H-1-phenothiazinol. An analysis of the IR spectra has shown that intramolecular interactions between the OH and NH groups occur in solutions of 2-anilino-4,6-di-tertbutylphenol in CCl₄ to form O-H⋯N hydrogen bonds. The NH groups in solutions of N-(3,5-di-tert-butyl-2-methoxyphenyl)aniline in CCl₄ are present in the non-associated state because of the absence of hydroxyl groups in the molecular structure. The OH and NH groups in solutions of 2,4-di-tert-butyl-10H-1-phenothiazinol in CCl₄ do not interact within the molecule due to a decrease in the conformational mobility of the molecular fragments due to the presence of the rigid C_Ar-S-C_Ar molecular bond in this compound. Intermolecular interactions involving the NH groups occur in the solid state of these compounds. __________ Translated from Zhurnal Prikladnoi Spektroskopii, Vol. 75, No. 1, pp. 68–73, January–February, 2008.     

Hydrogen bonds and antiviral activity of benzaldehyde derivatives

We have obtained the Fourier transform IR spectra of solutions of benzaldehyde derivatives having different antiviral activities against a herpes virus. We observe a correlation between the presence of hydrogen bonds in the benzaldehyde molecules and the appearance of antiviral properties in the compounds. For compounds having antiviral activity, we have obtained spectral data suggesting the existence of hydrogen bonds of the type C=O⋅⋅⋅H–O and O–H⋅⋅⋅O in the molecules. When the hydrogen atom in the hydroxyl groups are replaced by a methyl group, no intramolecular hydrogen bonds are formed and the compounds lose their antiviral activity.     

Molecular mechanism of gelation upon the addition of water to a solution of poly(acrylonitrile) in dimethylsulfoxide

The solidification of a solution of poly(acrylonitrile) (PAN) in dimethylsulfoxide (DMSO) upon introduction of water into the solution is studied by Raman spectroscopy. In the absence of water, DMSO molecules are found to produce dipole-dipole bonds with PAN molecules. Upon the introduction of water, DMSO molecules produce hydrogen bonds with it and bands at 1005 and 1015 cm⁻¹ appear in the Raman spectrum, which are assigned to the valence vibrations of S=O bonds involved in the hydrogen bonds. Simultaneously, water molecules produce hydrogen bonds with PAN molecules: R-C≡N...H-O-H...N≡C-R, where R is the carbon skeleton of a PAN molecule. Accordingly, a band at 2250 cm⁻¹ arises in the Raman spectrum, which is assigned to the valence vibrations of C≡N bonds producing hydrogen bonds with a water molecule. When the water content is low and the DMSO concentration is high, the length of the hydrogen bonds varies in wide limits and the band at 2250 cm⁻¹ is wide. As the water content rises, DMSO molecules come out of PAN, the variation of the hydrogen bond length in it decreases (the band at 2250 cm⁻¹ narrows), and a high-viscosity system (gel) arises that consists of PAN molecules bonded to water molecules via “equally strong” hydrogen bonds.     

Weakly bonded cluster structures of N,N′-dimethylethyleneurea and water

Intermolecular interactions between a single water and two N,N′-dimethylethyleneurea (DMEU) molecules have been investigated using ab initio quantum chemistry method. The local and density-fitting approximations of the standard Møller-Plesset perturbation theory (DF-LMP2) have been employed together with the aug-cc-pVTZ basis set. Several trimeric systems were built where the water molecule, through the O-H?N hydrogen bond interactions, played the role of the bridge between the two DMEU molecules. The results show that the presence of the water molecule does not increase the stability of the trimeric systems. In the first three configurations the water molecule intercalates between two DMEU molecules, forming stable clusters. In the next three configurations, the water molecule is attached to a plane-parallel stacked DMEU dimer through the C=O?H-O hydrogen bond, and these structures are more stable than the first three. Small-angle neutron scattering data show clustering of DMEU molecules in their dilute aqueous solutions, and the ab initio results suggest that DMEU molecules could form contact pairs in dilute aqueous solutions.     

The molecular structure and intermolecular interactions of 1,3:2,4-dibenzylidene-D-sorbitol

The 1,3(R):2,4(S)-dibenzylidene-D-sorbitol (DBS) molecule is a low molar mass organic gelator (LMOG) that is capable of hydrogen-bonding with itself. As a consequence, DBS molecules self-organize into nanofibrillar networks at relatively low concentrations in a wide variety of organic solvents and polymers. In this work, molecular mechanics and molecular dynamics simulations were conducted to elucidate the equilibrium structure of DBS and the molecular interactions that govern DBS self-assembly. Molecular mechanics calculations performed on single DBS molecules with Cerius² and InsightII software reveal that the pheny^l rings tend to adopt an equatorial position and that the pendant hydroxyl group prefers to form an intramolecular hydrogen bond with an acetal oxygen, in contrast to the terminal hydroxyl group. Molecular mechanics and molecular dynamics on DBS dimers reveal that they are capable of forming hydrogen bonds and participating in π interactions, suggesting that the mechanism of nanofibrillar network formation may be complex, involving more than one type of physical interaction.     

IR Spectroscopic Investigation and Conformational Analysis of Unsaturated C<Superscript>20</Superscript> and C<Superscript>22</Superscript> Steroid Alcohols

With the IR-spectroscopy method and the quantum-chemical AM1 method, the Δ²² and Δ²³ steroids containing a hydroxyl group at C²⁰ or C²² have been studied in order to elucidate the mutual arrangement in space of the hydroxyl group and of the double bond in the side chain of the molecules. The conformational analysis of steroid alcohols has been performed and the population of their stable conformers has been calculated. The frequencies of the bands in the IR spectra of alcohols in the region of the stretching vibration of OH groups have been assigned to certain conformers and the possibility of formation of the intramolecular hydrogen bond of the OH groups with the π-electron cloud of C=C bonds has been analyzed. __________ Translated from Zhurnal Prikladnoi Spektroskopii, Vol. 72, No. 3, pp. 317–324, May–June, 2005.     

Intramolecular interactions in antiviral derivatives of 4,6-di-<Emphasis Type="Italic">tert</Emphasis>-butyl-2-aminophenol

We have used Fourier transform IR (FTIR) spectroscopy to study intramolecular interactions in solutions of 4,6-di-tert-butyl-2-aminophenol in n-hexane. When the hydroxyl group in the molecule is ortho to the amino group, an O―H⋅⋅⋅N intramolecular hydrogen bond is formed in the 4-6-di-tert-butyl-2-aminophenol derivatives, where the strength of the hydrogen bond depends on the type of substituent at the para position of the phenyl ring. If there are electron-donor groups on the phenyl ring, then a stronger O―H⋅⋅⋅N bond is formed in the 4,6-di-tert-butyl-2-aminophenol derivatives than in molecules containing electron-acceptor Cl and Br atoms. Formation of the above-indicated intramolecular hydrogen bond affects the course of radiation-induced reactions occurring in n-hexane with participation of these compounds and also affects their antiviral activity. Translated from Zhurnal Prikladnoi Spektroskopii, Vol. 76, No. 3, pp. 434–439, May–June, 2009.     

利用二维红外相关光谱研究胶原/透明质酸共混物的相互作用

以胶原/透明质酸共混物中透明质酸的含量为外扰,利用二维红外相关光谱法研究了胶原/透明质酸共混物的构象变化及它们之间的相互作用.研究发现,1694,1524与1241 cm-1归属于胶原酰胺带的C=O对称伸缩振动、N-H摇摆与N-H面内变形振动峰之间存在同步正交叉峰,表明随着透明质酸组分的增加,胶原的链段构象发生了变化.当胶原/透明质酸共混体系中透明质酸含量由0增至50%时,1045cm-1归属于透明质酸的C-OH伸缩振动峰与1694 cm-1归属于胶原C=O对称伸缩振动峰存在同步负交叉峰,表明透明质酸的O-H与胶原分子的C=O之间形成了氢键;当透明质酸含量从50%增至90%时,1045 cm-1的同步峰几乎消失,而在φ(1694,1524),φ(1694,1241),φ(1524,1241)出现的正交叉峰反而增强,说明透明质酸的O-H不再与胶原形成氢键,而是透明质酸的C=O与胶原分子的N-H之间形成氢键,致使胶原构象发生了变化.