Scanning tunneling and atomic force microscopy study of the misfit layer compounds (LaS)1.14(NbS2)n (n=1, 2) and [(Pb,Sb)S)]1.14NbS2

The misfit layer compounds (LaS)_1.14(NbS₂)_n (n=1, 2) and [(Pb,Sb)S]_1.14NbS₂ were examined by scanning tunneling microscopy (STM) and atomic force microscopy (AFM). In these compounds the NaCl-type double MS (M=La, Pb, Sb) layers (Q layers) alternate with the NbS₂ layers (H layers) made up of NbS₆ trigonal prisms. It was possible to record AFM and STM images for only the H layers for (LaS)_1.14(NbS₂)_n, but for both the H- and Q-layers for [(Pb,Sb)S]_1.14NbS₂. Partial and total electron density plots of the H and Q layers were calculated to interpret the observed STM and AFM images. The bright spots in the STM and AFM images of the H layer correspond to S atoms, and those of the Q layer to Pb and Sb atoms. The STM images for the Q layers of [(Pb,Sb)S]_1.14NbS₂ suggest that a short-range ordering of the Pb and Sb atoms occurs in the (Pb,Sb)S sheets of the Q layer.     

Atomic-registry-dependent electronic structures of sulfur vacancies in ReS2 studied by scanning tunneling microscopy/spectroscopy

Rhenium disulfide (ReS₂) is regarded as a promising candidate for optoelectronic applications (e.g., infrared photodetector), as it maintains a direct bandgap regardless of the number of layers unlike other typical transition metal dichalcogenides. Therefore, it is very important to understand and control the defects of ReS₂ for enhancing the performance of photodevices. In this work, we studied the electronic structures of ReS₂ affected by sulfur vacancies of different atomic registries at the atomic scale. The atomic and electronic structures of the mechanically exfoliated ReS₂ flakes were investigated using scanning tunneling microscopy (STM) and scanning tunneling spectroscopy (STS), and were confirmed using density functional theory (DFT) calculations. The atomic structural models indicate four distinguishable atomic registries of sulfur vacancies on one face of ReS₂. Energetically, these atomic vacancies prefer to locate on the bottom side of the top monolayer of ReS₂ flakes. Only two among four possible kinds of vacancies could be observed using STM and STS, and they were identified using additional DFT calculations. We believe that our results regarding the identification of the defects and understanding the corresponding effects for electronic structures will provide important insights to enhance the performances of ReS₂-based optoelectronic devices in the future.     

Scanning probe microscopy study of exfoliated oxidized graphene sheets

Exfoliated oxidized graphene (OG) sheets, suspended in an aqueous solution, were deposited on freshly cleaved HOPG and studied by ambient AFM and UHV STM. The AFM images revealed oxidized graphene sheets with a lateral dimension of 5–10 μm. The oxidized graphene sheets exhibited different thicknesses and were found to conformally coat the HOPG substrate. Wrinkles and folds induced by the deposition process were clearly observed. Phase imaging and lateral force microscopy showed distinct contrast between the oxidized graphene and the underlying HOPG substrate. The UHV STM studies of oxidized graphene revealed atomic scale periodicity showing a (0.273 ± 0.008) nm × (0.406 ± 0.013) nm unit cell over distances spanning few nanometers. This periodicity is identified with oxygen atoms bound to the oxidized graphene sheet. I(V) data were taken from oxidized graphene sheets and compared to similar data obtained from bulk HOPG. The dI/dV data from oxidized graphene reveals a reduction in the local density of states for bias voltages in the range of ±0.1 V.     

Fe3O4(111) termination of α-Fe2O3(0001)

Scanning tunnelling microscopy (STM) has been used to investigate the structure formed on an α-Fe₂O₃(0001) substrate after argon ion bombardment and annealing in 1 × 10⁻⁶ mbar of O₂ at 1000 K. The STM images recorded at positive sample bias reveal an hexagonal array, with a distance between (Fe) atoms of 6.0 ± 0.1 rA and steps in multiples of 4.8 Å. These results are consistent with formation of an Fe₃O₄(111) epitaxial layer terminating in a monolayer of Fe atoms.     

Scanning tunneling microscopy and spectroscopy study of charge inhomogeneities in bilayer graphene

We report a room-temperature scanning tunneling microscopy and spectroscopy study of bilayer graphene prepared by mechanical exfoliation on a SiO₂/Si surface and electrically contacted with gold pads using a mechanical mask. The bulk conductivity shows contributions from regions of varying electron density, indicating significant charge inhomogeneity. Large-scale topographic images show ripple-like structures with a roughness of ∼1 nm, while the small-scale atomic resolution images show graphite-like triangular lattices. The local () tunnel spectra have an asymmetric V-shape with the minima location showing significant spatial variation, indicating inhomogeneity in electron density of order 10¹¹ cm⁻². The minimum in spectrum at a fixed location also shifts linearly with the gate voltage with a slope consistent with the field-induced carrier density.     

Atomic force microscopy of living and fixed Xenopus laevis embryos

Xenopus laevis embryos are a rather simple and at the same time a very interesting animal model, which is widely used for research in developmental biology. Intensive coordinated cell movements take place during the multi-cellular organism development. Little is known of the cellular, molecular and biomechanical mechanisms of these movements. The conceptual framework for analysis of cell interactions within integrated populations is poorly developed. We have used atomic force microscopy (AFM) to observe the surface of fixed X. laevis embryos at different stages of their development. We have developed a new sample preparation protocol for these observations. The obtained images were compared with scanning electronic microscopy (SEM) data. Cell rearrangement during morphogenesis in vivo was also visualized by AFM. In the current paper we discuss facilities and challenges of using this technique for further embryo researching.     

Scanning tunneling microscopy study on a BC3 covered NbB2(0 0 0 1) surface

We have investigated a BC₃ covered NbB₂(0 0 0 1) surface using scanning tunneling microscopy (STM), scanning tunneling spectroscopy (STS), and low energy electron diffraction (LEED). The STM images reveal characteristic features of a Moiré pattern reflecting an incommensurate relation of the BC₃ sheet with the substrate: bright protrusions with the periodicity of the substrate lattice are modulated in intensity with the periodicity of the BC₃ lattice. As a result, the surface exhibits nm-scale patchy regions with either the √3 × √3 or the 1 × 1 structure of the substrate. The two-dimensional Fourier transformation pattern of the STM image is consistent with the LEED pattern proving the epitaxial and incommensurate relationship between BC₃ surface sheet and substrate. No feature of a predicted superconducting gap was found in STS spectra measured at 5 K.     

Structure of AuSi nanoparticles on Si(111) from reflection high-energy electron diffraction and scanning tunneling microscopy

Gold-rich Au _x Si_1−x particles grown on Si(111)7 × 7 are studied by reflection high-energy electron diffraction (RHEED) and scanning tunneling microscopy (STM). The diffraction patterns reveal that (1) at least two different crystal structures coexist on the substrate; (2) the most prominent data correspond to a rhombohedral or quasi closed-packed structure; and (3) the particles show formation of an unusual contact facet to the substrate. Complete crystal alignment of the particles to the substrate lattice is found with no hints of random orientation. The findings are compared to STM images in terms of their structure, orientation, and morphology.     

Electron tunneling from a metallic TS2 layer underneath an ultra-thin MS layer with semiconducting properties for misfit-layer compounds

The effects of electron tunneling from the underlying TS₂ (H) layer on the scanning tunneling microscopy (STM) images of the uppermost MS (Q) layer have been studied for the misfit-layer compounds which are represented by the chemical formula {(MS)_1+x}_m{TS₂}_n. Systematic STM observations have been carried out under ultra-high vacuum (UHV) conditions for the 1Q/1H, 1.5Q/1H and 2Q/1H types of misfit-layer compounds. As Q layer thickness increases from about 6 to 12 Å while going from the 1Q/1H type to the 2Q/1H type, pseudo-tetragonal arrays of bright spots as expected from the atomic arrangement of a Q layer are observed more easily and more distinctly. It is found that tunneling electrons from the underlying H layer play an important role on the STM observations of the 1Q/1H and 1.5Q/1H types of compounds. Fast Fourier transform (FFT) analyses give clear evidences for electron tunneling from the underlying H layer and scattering by surface atoms of the uppermost Q layer and a mutual modulation structure peculiar to the compounds.     

Atomic force microscopy (AFM), transmission electron microscopy (TEM) and scanning electron microscopy (SEM) of nanoscale plate-shaped second phase particles

The feasibility of accurately measuring the size and the volume fraction of nanoscale plate-shaped precipitates by atomic force microscopy (AFM) has been explored. For quantitative evaluations their unhandy geometry is conveniently described by superellipsoids. The experimental alloy Ni₆₉Co₉Al₁₈Ti₄ served as a model system: plate-shaped disordered γ-precipitates form in the L1₂ long-range ordered γ′-matrix. The results obtained by AFM are compared with those derived from transmission (TEM) and from high-resolution scanning electron microscopy (SEM). The agreement between the AFM and the TEM results is good. In spite of the low number of SEM images taken, the same holds for the SEM results. In addition, magnetic force microscopy was applied; its results are acceptable. The main advantages of AFM are (i) the numerical output for all three dimensions, (ii) the simplicity of its operation and (iii) the lower cost of the microscope itself. The first point allows the numerical AFM output data to be directly subjected to automated computer-based evaluations. All present experimental and evaluation procedures are also applicable to cube-shaped particles with rounded edges and corners as found, for example, in γ′-strengthened nickel-based superalloys.     

The chemisorption of pentacene on Si(0 0 1)-2 × 1

Adsorption structures of the pentacene (C₂₂H₁₄) molecule on the clean Si(0 0 1)-2 × 1 surface were investigated by scanning tunneling microscopy (STM) in conjunction with density functional theory calculations and STM image simulations. The pentacene molecules were found to adsorb on four major sites and four minor sites. The adsorption structures of the pentacene molecules at the four major sites were determined by comparison between the experimental and the simulated STM images. Three out of the four theoretically identified adsorption structures are different from the previously proposed adsorption structures. They involve six to eight Si-C covalent chemical bonds. The adsorption energies of the major four structures are calculated to be in the range 67-128 kcal/mol. It was also found that the pentacene molecule hardly hopped on the surface when applying pulse bias voltages on the molecule, but was mostly decomposed.     

Effect of chain length on the adhesion behaviour of n-alkanethiol self-assembled monolayers on Au(111): An atomic force microscopy study

The effect of chain length on the adhesion behaviour of n-alkanethiols CH₃(CH₂)_nSH, wheren = 5, 6, 7, 9, 10, 11, 14 and 15 has been followed by carrying out pull-off force measurement using atomic force microscopy (AFM). The self-assembled monolayers on Au(111) surface has been characterized by reflection absorption infra-red spectroscopy (RAIRS) and contact mode AFM. It is observed that the work of adhesion is independent of thiol chain length though the standard deviation is high for short chain length thiol-based monolayers. This may be attributed to the relatively more deformable nature of the short chain thiol films due to their heterogeneity in the monolayer structure than the long chain ones. This, in turn, increases the contact area/volume between the AFM tip and the monolayer, and hence the force of adhesion. However, in the presence of water, the force of adhesion is lower than that observed in air reflecting the effects of capillary forces/polar components associated with the surface energy.     

Organic superconductors revisited

The surfaces of a ten years aged crystal and a freshly prepared κ-(BEDT-TTF)₂Cu(NCS)₂ crystal were compared by scanning tunneling microscopy (STM). The molecularly-resolved STM images of the bc plane of the crystals agree with each other and with the electronic contrast obtained by new density functional theory (DFT) based simulations. Even after ten years STM images of the molecular stacking of BEDT-TTF display a variation in brightness at the positions of different molecules. We attribute this symmetry breaking concerning the brightness in the STM images of the otherwise equivalent BEDT-TTF dimers to the electronic states of a relaxed surface.     

Scanning probe microscopy characterization of gold-chemisorbed poplar plastocyanin mutants

Two poplar plastocyanin mutants adsorbed onto gold electrodes have been characterized at single molecule level by scanning probe microscopy. Immobilization of the two redox metalloprotein mutants on Au(1 1 1) surface was achieved by either a disulphide bridge (PCSS) or a single thiol (PCSH), both the anchoring groups having been introduced by site-directed mutagenesis. Scanning tunneling microscopy (STM) and atomic force microscopy (AFM) analysis gives evidence of a stable and robust binding of both mutants to gold. The lateral dimensions, as estimated by STM, and the height above the gold substrate, as evaluated by AFM, of the two mutants well agree with crystallographic sizes. A narrower height distribution is observed for PCSS compared to PCSH, corresponding to a more homogeneous orientation of the former mutant adsorbed onto gold. Major differences between the mutants are observed by electrochemical STM. In particular, the image contrast of adsorbed PCSS is affected by tuning the external electrochemical potential to the redox levels of the mutant, consistent with some involvement of copper active site in the tunneling process. On the contrary, no contrast variation is observed in electrochemical STM of adsorbed PCSH. Moreover, scanning tunneling spectroscopy experiments reveal asymmetric I–V characteristics for single PCSS proteins, reminiscent of a rectifying-like behaviour, whereas an almost symmetric I–V relation is observed for PCSH.     

Self-assembled germanium nano-clusters on silver(1 1 0)

The adsorption of germanium on Ag(1 1 0) has been investigated by scanning tunnelling microscopy (STM), as well as surface X-ray diffraction (SXRD). At 0.5 germanium monolayer (ML) coverage, Low Energy Electron Diffraction (LEED) patterns reveals a sharp c(4 × 2) superstructure. Based on STM images and SXRD measurements, we present an atomic model of the surface structure with Ge atoms forming tetramer nano-clusters perfectly assembled in a two-dimensional array over the silver top layer. The adsorption of the germanium atoms induces a weak perturbation of the Ag surface. Upon comparison with results obtained on the (1 1 1) and (1 0 0) faces, we stress the role played by the relative interactions between silver and germanium on the observed surface structures.     

Investigation of the electronic properties of Au nanoclusters in SiO<Subscript>2</Subscript> by combined scanning tunneling/atomic force microscopy

The tunneling of electrons through Au nanoc lusters formed by pulsed laser deposition in a SiO₂ thin film on a Si substrate has been investigated by combined scanning/atomic force microscopy (STM/AFM). Conducting Pt-coated Si cantilevers were used. The feedback was maintained via the AFM channel, and the current-voltage (I-V) characteristics of the tunnel contact between the AFM probe and the n ⁺-Si substrate through a =4-nm-thick SiO₂ film with Au nanoclusters =2 nm in diameter were measured simultaneously. The current image of the structure contained areas of increased current (tunnel-current channels) 2–15 nm in size, related to tunneling of electrons through Au nanoclusters in SiO₂. The I-V characteristics recorded in the tunnel-current channels exhibit specific features related to the Coulomb blockade of electron tunneling through Au nanoclusters.     

利用扫描隧道显微镜在溶液中直接观测过渡族金属硫属化合物

本文利用自制的溶液扫描隧道显微镜在溶液环境下直接观测到TiSe₂、MoTe₂和TaS₂样品的原子分辨率图像. 通过将单晶样品在溶液中直接解理,可以保护解理过的新鲜样品表面在几个小时内不会被严重污染. 利用自行搭建的溶液扫描隧道显微镜,首先观察到了TiSe₂活泼样品的原子分辨率图像,并观察到了TiSe₂表面所特有的点缺陷和三角形缺陷结构. 此外,还观察到了MoTe₂的原子分辨率超结构和TaS₂表面的电荷密度波结构. 结果表明：在室温、溶液环境下能更高效的研究过渡族金属硫属化合物等活泼样品的表面电子态结构,同样适用于溶液环境下的电催化和电化学研究.     

Scanning Hall probe microscopy of vortex matter

Scanning Hall probe microscopy (SHPM) is a novel scanned probe magnetic imaging technique whereby the stray fields at the surface of a sample are mapped with a sub-micron semiconductor heterostructure Hall probe. In addition an integrated scanning tunnelling microscope (STM) or atomic force microscope (AFM) tip allows the simultaneous measurement of the sample topography, which can then be correlated with magnetic images. SHPM has several advantages over alternative methods; it is almost completely non-invasive, can be used over a very wide range of temperatures (0.3–300 K) and magnetic fields (0–7 T) and yields quantitative maps of the z-component of magnetic induction. The approach is particularly well suited to low temperature imaging of vortices in type II superconductors with very high signal:noise ratios and relatively high spatial resolution (>100 nm). This paper will introduce the design principles of SHPM including the choice of semiconductor heterostructure for different measurement conditions as well as surface tracking and scanning mechanisms. The full potential of the technique will be illustrated with results of vortex imaging studies of three distinct superconducting systems: (i) vortex chains in the “crossing lattices” regime of highly anisotropic cuprate superconductors, (ii) vortex–antivortex pairs spontaneously nucleated in ferromagnetic-superconductor hybrid structures, and (iii) vortices in the exotic p-wave superconductor Sr₂RuO₄ at milliKelvin temperatures.     

Study of local density of electron states in InGaAs/GaAs quantum rings by combined STM/AFM

The electronic structure of self-assembled InGaAs/GaAs(001) quantum rings grown by atmospheric pressure metal-organic vapor phase epitaxy has been investigated by combined scanning tunneling/atomic force microscopy (STM/AFM) in ultrahigh vacuum (UHV) for the first time. The current images and the tunnel spectra of contact of Pt-coated Si AFM probe to the quantum ring heterostructure surface revealing the spatial distribution of the local density of states and the electron size quantization spectra in the quantum rings have been obtained.