Modular networks with hierarchical organization: The dynamical implications of complex structure

Several networks occurring in real life have modular structures that are arranged in a hierarchical fashion. In this paper, we have proposed a model for such networks, using a stochastic generation method. Using this model we show that, the scaling relation between the clustering and degree of the nodes is not a necessary property of hierarchical modular networks, as had previously been suggested on the basis of a deterministically constructed model. We also look at dynamics on such networks, in particular, the stability of equilibria of network dynamics and of synchronized activity in the network. For both of these, we find that, increasing modularity or the number of hierarchical levels tends to increase the probability of instability. As both hierarchy and modularity are seen in natural systems, which necessarily have to be robust against environmental fluctuations, we conclude that additional constraints are necessary for the emergence of hierarchical structure, similar to the occurrence of modularity through multi-constraint optimization as shown by us previously.      

Epidemic outbreaks in growing scale-free networks with local structure

The class of generative models has already attracted considerable interest from researchers in recent years and much expanded the original ideas described in BA model. Most of these models assume that only one node per time step joins the network. In this paper, we grow the network by adding n interconnected nodes as a local structure into the network at each time step with each new node emanating m new edges linking the node to the preexisting network by preferential attachment. This successfully generates key features observed in social networks. These include power-law degree distribution p_k∼k^−(3+μ), where μ=(n−1)/m is a tuning parameter defined as the modularity strength of the network, nontrivial clustering, assortative mixing, and modular structure. Moreover, all these features are dependent in a similar way on the parameter μ. We then study the susceptible-infected epidemics on this network with identical infectivity, and find that the initial epidemic behavior is governed by both of the infection scheme and the network structure, especially the modularity strength. The modularity of the network makes the spreading velocity much lower than that of the BA model. On the other hand, increasing the modularity strength will accelerate the propagation velocity.     

Structural preferential attachment: network organization beyond the link

We introduce a mechanism which models the emergence of the universal properties of complex networks, such as scale independence, modularity and self-similarity, and unifies them under a scale-free organization beyond the link. This brings a new perspective on network organization where communities, instead of links, are the fundamental building blocks of complex systems. We show how our simple model can reproduce social and information networks by predicting their community structure and more importantly, how their nodes or communities are interconnected, often in a self-similar manner.     

Surveying network community structure in the hidden metric space

Most real-world networks from various fields share a universal topological property as community structure. In this paper, we propose a node-similarity based mechanism to explore the formation of modular networks by applying the concept of hidden metric spaces of complex networks. It is demonstrated that network community structure could be formed according to node similarity in the underlying hidden metric space. To clarify this, we generate a set of observed networks using a typical kind of hidden metric space model. By detecting and analyzing corresponding communities both in the observed network and the hidden space, we show that the values of the fitness are rather close, and the assignments of nodes for these two kinds of community structures detected based on the fitness parameter are extremely matching ones. Furthermore, our research also shows that networks with strong clustering tend to display prominent community structures with large values of network modularity and fitness.     

基于复杂网络的灾害蔓延模型评价及改进

介绍了几种已存在的复杂网络上的灾害蔓延模型,在对模型进行优缺点评价的基础上,给出了一种网络中存在冗余系统的改进模型.对不同的模型,在不同的网络结构下,仿真分析了蔓延过程的差异以及重要参数的作用.结果表明网络中存在冗余系统的灾害蔓延过程变缓,相应有了更多的应急、补救时间,同时也解释了现实生活中大规模灾害事件很少发生的原因. 关键词： 复杂网络 灾害蔓延 冗余系统     

Jamming and correlation patterns in traffic of information on sparse modular networks

We study high-density traffic of information packets on sparse modular networks with scale-free subgraphs. With different statistical measures we distinguish between the free flow and congested regime and point out the role of modules in the jamming transition. We further consider correlations between traffic signals collected at each node in the network. The correlation matrix between pairs of signals reflects the network modularity in the eigenvalue spectrum and the structure of eigenvectors. The internal structure of the modules has an important role in the diffusion dynamics, leading to enhanced correlations between the modular hubs, which can not be filtered out by standard methods. Implications for the analysis of real networks with unknown modular structure are discussed.     

小世界网络与无标度网络的社区结构研究

模块性(modularity)是度量网络社区结构(community structure)的主要参数.探讨了Watts和Strogatz的小世界网络(简称W-S模型)以及Barabàsi 等的B-A无标度网络(简称B-A模型)两类典型复杂网络模块性特点.结果显示，网络模块性受到网络连接稀疏的影响，W-S模型具有显著的社区结构，而B-A模型的社区结构特征不明显.因此，应用中应该分别讨论网络的小世界现象和无标度特性.社区结构不同于小世界现象和无标度特性，并可以利用模块性区别网络类型，因此网络复杂性指标应该包括 关键词： 模块性 社区结构 小世界网络 无标度网络     

Comparison of methods for the detection of node group membership in bipartite networks

Most real-world networks considered in the literature have a modular structure. Analysis of these real-world networks often are performed under the assumption that there is only one type of node. However, social and biochemical systems are often bipartite networks, meaning that there are two exclusive sets of nodes, and that edges run exclusively between nodes belonging to different sets. Here we address the issue of module detection in bipartite networks by comparing the performance of two classes of group identification methods – modularity maximization and clique percolation – on an ensemble of modular random bipartite networks. We find that the modularity maximization methods are able to reliably detect the modular bipartite structure, and that, under some conditions, the simulated annealing method outperforms the spectral decomposition method. We also find that the clique percolation methods are not capable of reliably detecting the modular bipartite structure of the bipartite model networks considered.     

An evolving network model with modular growth

In this paper, we propose an evolving network model growing fast in units of module, according to the analysis of the evolution characteristics in real complex networks. Each module is a small-world network containing several interconnected nodes and the nodes between the modules are linked by preferential attachment on degree of nodes. We study the modularity measure of the proposed model, which can be adjusted by changing the ratio of the number of inner-module edges and the number of inter-module edges. In view of the mean-field theory, we develop an analytical function of the degree distribution, which is verified by a numerical example and indicates that the degree distribution shows characteristics of the small-world network and the scale-free network distinctly at different segments. The clustering coefficient and the average path length of the network are simulated numerically, indicating that the network shows the small-world property and is affected little by the randomness of the new module.     

Multiple dynamical time-scales in networks with hierarchically nested modular organization

Many natural and engineered complex networks have intricate mesoscopic organization, e.g., the clustering of the constituent nodes into several communities or modules. Often, such modularity is manifested at several different hierarchical levels, where the clusters defined at one level appear as elementary entities at the next higher level. Using a simple model of a hierarchical modular network, we show that such a topological structure gives rise to characteristic time-scale separation between dynamics occurring at different levels of the hierarchy. This generalizes our earlier result for simple modular networks, where fast intramodular and slow intermodular processes were clearly distinguished. Investigating the process of synchronization of oscillators in a hierarchical modular network, we show the existence of as many distinct time-scales as there are hierarchical levels in the system. This suggests a possible functional role of such mesoscopic organization principle in natural systems, viz., in the dynamical separation of events occurring at different spatial scales.     

Fuzzy modularity and fuzzy community structure in networks

To find the fuzzy community structure in a complex network, in which each node has a certain probability of belonging to a certain community, is a hard problem and not yet satisfactorily solved over the past years. In this paper, an extension of modularity, the fuzzy modularity is proposed, which can provide a measure of goodness for the fuzzy community structure in networks. The simulated annealing strategy is used to maximize the fuzzy modularity function, associating with an alternating iteration based on our previous work. The proposed algorithm can efficiently identify the probabilities of each node belonging to different communities with random initial fuzzy partition during the cooling process. An appropriate number of communities can be automatically determined without any prior knowledge about the community structure. The computational results on several artificial and real-world networks confirm the capability of the algorithm.     

A Collaboration Network Model with Multiple Evolving Factors

To describe the empirical data of collaboration networks,several evolving mechanisms have been proposed,which usually introduce different dynamics factors controlling the network growth.These models can reasonably reproduce the empirical degree distributions for a number of well-studied real-world collaboration networks.On the basis of the previous studies,in this work we propose a collaboration network model in which the network growth is simultaneously controlled by three factors,including partial preferential attachment,partial random attachment and network growth speed.By using a rate equation method,we obtain an analytical formula for the act degree distribution.We discuss the dependence of the act degree distribution on these different dynamics factors.By fitting to the empirical data of two typical collaboration networks,we can extract the respective contributions of these dynamics factors to the evolution of each networks.     

Detection of node group membership in networks with group overlap

Most networks found in social and biochemical systems have modular structures. An important question prompted by the modularity of these networks is whether nodes can be said to belong to a single group. If they cannot, we would need to consider the role of “overlapping communities.” Despite some efforts in this direction, the problem of detecting overlapping groups remains unsolved because there is neither a formal definition of overlapping community, nor an ensemble of networks with which to test the performance of group detection algorithms when nodes can belong to more than one group. Here, we introduce an ensemble of networks with overlapping groups. We then apply three group identification methods – modularity maximization, k-clique percolation, and modularity-landscape surveying – to these networks. We find that the modularity-landscape surveying method is the only one able to detect heterogeneities in node memberships, and that those heterogeneities are only detectable when the overlap is small. Surprisingly, we find that the k-clique percolation method is unable to detect node membership for the overlapping case.     

Predicting the growth of new links by new preferential attachment similarity indices

By revisiting the preferential attachment (PA) mechanism for generating a classical scale-free network, we propose a class of novel preferential attachment similarity indices for predicting future links in evolving networks. Extensive experiments on 14 real-life networks show that these new indices can provide more accurate prediction than the traditional one. Due to the improved prediction accuracy and low computational complexity, these proposed preferential attachment indices can be helpful for providing both instructions for mining unknown links and new insights to understand the underlying mechanisms that drive the network evolution.     

Maximum modular graphs

Modularity has been explored as an important quantitative metric for community and cluster detection in networks. Finding the maximum modularity of a given graph has been proven to be NP-complete and therefore, several heuristic algorithms have been proposed. We investigate the problem of finding the maximum modularity of classes of graphs that have the same number of links and/or nodes and determine analytical upper bounds. Moreover, from the set of all connected graphs with a fixed number of links and/or number of nodes, we construct graphs that can attain maximum modularity, named maximum modular graphs. The maximum modularity is shown to depend on the residue obtained when the number of links is divided by the number of communities. Two applications in transportation networks and data-centers design that can benefit of maximum modular partitioning are proposed.     

复杂网络中社团结构发现的多分辨率密度模块度

现实中的许多复杂网络呈现出明显的模块性或社团性.模块度是衡量社团结构划分优劣的效益函数, 它也通常被用作社团结构探测的目标函数,但最为广泛使用的Newman-Girvan模块度却存在着分辨率限制问题,多分辨率模块度也不能克服误合并社团和误分裂社团同时存在的缺陷. 本文在网络密度的基础上提出了多分辨率的密度模块度函数, 通过实验和分析证实了该函数能够使社团结构的误划分率显著降低, 而且能够体现出网络社团结构是一个有机整体,不是各个社团的简单相加.     

A neighbourhood evolving network model

Many social, technological, biological and economical systems are best described by evolved network models. In this short Letter, we propose and study a new evolving network model. The model is based on the new concept of neighbourhood connectivity, which exists in many physical complex networks. The statistical properties and dynamics of the proposed model is analytically studied and compared with those of Barabási–Albert scale-free model. Numerical simulations indicate that this network model yields a transition between power-law and exponential scaling, while the Barabási–Albert scale-free model is only one of its special (limiting) cases. Particularly, this model can be used to enhance the evolving mechanism of complex networks in the real world, such as some social networks development.     

Network modules help the identification of key transport routes,signaling pathways in cellular and other networks

Complex systems are successfully reduced to interacting elements via the network concept. Transport plays a key role in the survival of networks – for example the specialized signaling cascades of cellular networks filter noise and efficiently adapt the network structure to new stimuli. However, our general understanding of transport mechanisms and signaling pathways in complex systems is yet limited. Here we summarize the key network structures involved in transport, list the solutions available to overloaded systems for relaxing their load and outline a possible method for the computational determination of signaling pathways. We highlight that in addition to hubs, bridges and the network skeleton, the overlapping modular structure is also essential in network transport. Path‐lenghts in the module‐space of the yeast protein‐protein interaction network indicated that module‐based paths may cross fewer modular boundaries than shortest paths. Moreover, by locating network elements in the space of overlapping network modules and evaluating their distance in this ‘module space’, it may be possible to approximate signaling pathways computationally, which, in turn could serve the identification of signaling pathways of complex systems. Our model may be applicable in a wide range of fields including traffic control or drug design.     

蛋白质相互作用网络特征的理论再现

无标度性、小世界性、功能模块结构及度负关联性是大量生物网络共同的特征. 为了理解生物网络无标度性、小世界性和度负关联性的形成机制, 研究者已经提出了各种各样基于复制和变异的网络增长模型. 在本文中,我们从生物学的角度通过引入偏爱小复制原则及变异和非均匀的异源二聚作用构建了一个简单的蛋白质相互作用网络演化模型.数值模拟结果表明,该演化模型几乎可以再现现在实测结果所公认的蛋白质相互作用网络的性质：无标度性、小世界性、度负关联性和功能模块结构. 我们的演化模型对理解蛋白质相互作用网络演化过程中的可能机制提供了一定的帮助. 关键词： 蛋白质相互作用网络 偏爱小 非均匀的异源二聚作用 功能模块结构