光谱学研究重金属离子参与下对甲萘威与ctDNA相互作用的影响

应用紫外、荧光光谱分析方法,研究了离体条件八种重金属参与下对农药甲萘威与小牛胸腺DNA的相互作用的影响。当有不同重金属离子参与时,甲萘威的猝灭常数及其结合位点数都发生了不同的变化。通过计算和分析,重金属离子对甲萘威与ct-DNA的加合物的影响程度为Pb2 >Ag >Cu2 >Ni2 >Co2 >Zn2 >Cd2 >Cr3 。通过400 mol.L-1的不同金属离子对ctDNA的作用研究,得出不同离子对DNA的双螺旋结构的破坏能力强弱依次为:Pb2 >Cd2 >Ag >Co2 >Zn2 ≈Cu2 >Ni2 >Cr2 。两种光谱所得结果表明不同重金属离子对DNA的作用机理不同。     

氢氯噻嗪与DNA相互作用的光谱研究

用紫外光谱法和荧光光谱法研究了氢氯噻嗪(HCT)和小牛胸腺DNA(ctDNA)之间的相互作用.在pH 7.0的磷酸盐缓冲溶液中,HCT的荧光激发峰和发射峰分别位于278nm和360nm处.ctDNA的加入对HCT的荧光存在着很强的荧光猝灭作用,这种荧光静态猝灭作用是由ctDNA和HCT键合引起,键合常数为1.12×10-4L/mol(25℃).采用紫外光谱,离子强度的影响和Ⅰ-猝灭等条件实验研究了HCT与DNA间的相互作用.DNA浓度的变化不改变它们的作用,属于沟槽作用模式.     

环丙氟沙星荧光探针对小牛胸腺DNA相互作用的研究

使用紫外和荧光光谱法研究了环丙氟沙星(CIF)和小牛胸腺DNA(ctDNA)之间的相互作用.在pH7.0磷酸盐缓冲液中,CIF在270 nm激发和在420 nm处有很强的荧光发射.它们间的沟槽作用导致小牛胸腺ctDNA对CIF的荧光存在着很强的猝灭作用,猝灭常数为2.64×104mol-1L(25℃).利用ctDNA对CIF的荧光猝灭作用建立了核酸测定的新方法,线性范围为80 mol·L-1～45 μmol·L-1,对25 μmol·L-1ctDNA的相对标准偏差为4.2%.     

荧光光谱法研究拜复乐与小牛胸腺DNA的作用机理

用荧光光谱法研究了拜复乐(MXFX)与小牛胸腺DNA(ctDNA)之间的相互作用。在pH=7.4的TrisHCl缓冲溶液中,MXFX的荧光激发峰和发射峰分别位于291 nm和462 nm。ctDNA的加入对MXFX的荧光有静态猝灭作用,这种荧光静态猝灭作用是由ctDNA和MXFX结合引起的,作用力为氢键或范德华力,结合常数为1.28×105L/mol(25℃)。采用离子强度的影响、碘离子猝灭及溴乙锭竞争作用实验研究了MXFX与ctDNA间的相互作用,结果表明MXFX与DNA的结合是MXFX嵌入到DNA中相邻2个碱基对之间,属于嵌入结合模式。     

荧光光谱法研究拜复乐与小牛胸腺DNA的作用机理

用荧光光谱法研究了拜复乐（MXFX）与小牛胸腺DNA（ctDNA）之间的相互作用。在pH=7.4的Tris-HCl缓冲溶液中,MXFX的荧光激发峰和发射峰分别位于291 nm和462 nm。ctDNA的加入对MXFX的荧光有静态猝灭作用,这种荧光静态猝灭作用是由ctDNA和MXFX结合引起的,作用力为氢键或范德华力,结合常数为1.28×10⁵ L/mol（25 ℃）。采用离子强度的影响、碘离子猝灭及溴乙锭竞争作用实验研究了MXFX与ctDNA间的相互作用,结果表明MXFX与DNA的结合是MXFX嵌入到DNA中相邻2个碱基对之间,属于嵌入结合模式。     

氧氟沙星和左氧氟沙星与DNA的相互作用研究

采用紫外光谱、荧光光谱、荧光偏振以及K3Fe(CN)6荧光猝灭实验研究了氧氟沙星(Ofloxacin,OFLX)和左氧氟沙星(Levofloxacin,L-OFLX)与小牛胸腺DNA(ctDNA)的相互作用差异性与作用模式。紫外光谱的结果表明,当向OFLX和L-OFLX溶液中加入ctDNA并且浓度增大时,OFLX和L-OFLX的吸收光谱都呈现略微的减色效应,但吸收峰位置没有发生偏移,L-OFLX的减色效应略强于OFLX的减色效应;从荧光光谱以及OFLX和L-OFLX的Scatchard方程,获得其键合常数分别为1.15×105L.mol-1,3.75×105L.mol-1,表明L-OFLX与ctDNA的相互作用要略强于OFLX与ctDNA的相互作用;荧光偏振实验、单双链ctDNA与药物作用实验、K3Fe(CN)6荧光猝灭实验都表明OFLX、L-OFLX与ctDNA的作用模式可能是沟槽结合。     

染料木素酯化修饰物与ctDNA的相互作用

在pH7.2的Tris-HCl缓冲溶液中,采用紫外光谱和荧光光谱法研究了2种新型染料木素酯化修饰物,染料木素7-乙酰阿魏酸酯(GenA)和染料木素7,4′-二-乙酰阿魏酸酯(GenDA)与小牛胸腺DNA(ctDNA)的相互作用。随着ctDNA的加入,GenA与GenDA的紫外吸收和荧光光谱的强度均发生不同程度的降低。ctDNA对化合物的荧光猝灭为静态猝灭过程。在293K时化合物与ctDNA的结合常数分别为2.81×106L.mol-1和1.19×104L.mol-1。同时通过I-离子效应、离子强度、DNA熔点、粘度法等研究证实,在该实验条件下,GenA与ctDNA之间具有较强的作用,主要以嵌插方式结合;GenDA主要以沟槽方式与ctDNA作用。     

荧光探针法研究百草枯与DNA的相互作用

以中性红（NR）为分子探针,应用紫外光谱法和荧光光谱法研究了除草剂百草枯（PQ）与小牛胸腺DNA（ctDNA）之间的相互作用。在pH7.3的Tris-HCl（5×10-2mol.L-1）缓冲溶液中,NR分子主要以嵌插方式结合到ctDNA双螺旋结构上,百草枯的加入抑制了NR与ctDNA之间的结合,用Stern-Volmer方程进行数据处理,表明百草枯对ctDNA-NR的荧光猝灭不是单纯的静态或动态猝灭方式,属于混合型的。综合紫外光谱、离子强度等研究证实,在该实验条件下,百草枯与DNA之间存在静电和嵌插两种作用。     

光谱法研究柔红霉素衍生物DNR-D3与DNA相互作用

在人体生理条件下(pH7.4),利用紫外光谱法和荧光光谱法研究了本实验室合成的柔红霉素衍生物DNR-D3与小牛胸腺DNA(ctDNA)的相互作用。实验发现,在ctDNA存在下DNR-D3的紫外吸收光谱发生减色效应且出现红移现象,这表明DNR-D3与ctDNA相互作用的结合方式以嵌插为主。通过20,30,37℃条件下ctDNA与DNR-D3相互作用的荧光光谱,判断ctDNA与DNR-D3之间荧光猝灭方式为静态猝灭。利用荧光数据计算不同温度下的结合常数,结合位点数及热力学参数,从而判断DNR-D3与ctDNA的作用方式以嵌插为主,作用力类型是以氢键和静电作用为主,此过程是放热的焓熵协同驱动过程。DNR-D3的荧光猝灭50%时DNR-D3与ctDNA的摩尔浓度比Rc=7/25,这表明DNR-D3的蒽环与ctDNA发生了强烈的嵌插作用,DNR-D3显示出了较强的抗癌活性。通过研究可知,DNR-D3有望成为抗癌活性候选药物。     

有/无金属离子Cu2+或Zn2+参与时中药有效成分伞形花内酯与生物大分子BSA的相互作用

运用荧光光谱(FS)及紫外光谱(UV)研究了有/无金属离子Cu2 或Zn2 参与时中药有效成分伞形花内酯与生物大分子牛血清白蛋白(BSA)的相互作用。实验结果表明:有/无金属离子参与时,伞形花内酯均与BSA形成基态复合物从而猝灭BSA的内源性荧光,猝灭原因主要为静态猝灭和非辐射能量转移;金属离子参与使得KA增大,n仍维持在2左右;伞形花内酯分子能够扦插入BSA分子内部,温度以及金属离子参与对伞形花内酯与BSA分子中荧光性氨基酸残基间的空间距离r影响不大。有/无金属离子参与时伞形花内酯与BSA的作用过程均是一个熵增加和Gibbs自由能降低的自发超分子作用过程。伞形花内酯与BSA之间以静电相互作用为主,金属离子参与使伞形花内酯与BSA分子间静电相互作用增强,故ΔH对ΔG的贡献增大。     

Study on the Interaction of an Anthracycline Disaccharide with DNA by Spectroscopic Techniques and Molecular Modeling

This study was designed to examine the interaction of 4'-O-(a-L-Cladinosyl) daunorubicin (DNR-D5), a disaccharide anthracycline with calf thymus deoxyribonucleic acid (ctDNA) by UV/Vis in combination with fluorescence spectroscopy and molecular modeling techniques under physiological conditions (Britton-Robinson buffer solutions, pH?=?7.4). By the analysis of UV/Vis spectrum, it was observed that upon binding to ctDNA the anthraquinone chromophore of DNR-D5 could slide into the base pairs. Moreover, the large binding constant indicated DNR-D5 had a high affinity with ctDNA. At the same time, fluorescence spectra suggested that the quenching mechanism of the interaction of DNR-D5 to ctDNA was a static quenching type. The binding constants between DNR-D5 and ctDNA were calculated based on fluorescence quenching data at different temperatures. The negative ?G implied that the binding process was spontaneous, and negative ?H and negative ΔS suggested that hydrogen bonding force most likely played a major role in the binding of DNR-D5 to ctDNA. Moreover, the results obtained from molecular docking corroborate the experimental results obtained from spectroscopic investigations.     

溴鼠灵与DNA作用机制的光谱研究

农用化学物质残留可能会与DNA结合形成加和物,从而对动物和人类造成危害.文章利用紫外光谱和荧光光谱研究了溴鼠灵(BDF)与小牛胸腺DNA(ct-DNA)的作用机理.结果表明,低浓度的ct-DNA可使BDF的吸收光谱发生减色,ct-DNA对BDF的稳态荧光有明显的的猝灭作用,属于静态猝灭方式,27℃时Ksv=1.21×104L·mol-1;根据热力学参数推测BDF与ct-DNA之间的相互作用主要是范德瓦耳斯力作用;猝灭试验发现ct-DNA对BDF无明显保护作用;离子强度改变时,BDF/ct-DNA体系的荧光强度也随之改变;ct-DNA对β-CD/BDF包络物的荧光也有猝灭,但猝灭程度比游离的BDF有所降低,表明β-CD对BDF具有保护作用,也说明BDF与ct-DNA或β-CD的结合具有竞争性.各试验结果一致表明BDF与ct-DNA之间主要是以沟区结合方式发生作用.另外,试验结果也表明BDF与ct-DNA之间还存在静电作用.范德瓦耳斯力和静电作用的共同作用,为BDF在沟区与DNA的相互结合提供了更好条件.     

Study on the toxic interactions of Ni with DNA using neutral red dye as a fluorescence probe

The interaction between Ni²⁺ and calf thymus DNA (ctDNA) was investigated in simulated physiological buffer (pH 7.4) using the Neutral Red (NR) dye as a spectral probe by UV-vis absorption and fluorescence spectroscopy, as well as CD spectra. The experimental results showed that the conformational changes in DNA helix induced by Ni²⁺ are the reason for the fluorescence quenching of the DNA-NR system. From the experimental results, conclusion can be drawn that Ni²⁺ can cause structural changes of ctDNA and bind with DNA by electrostatic interaction. At the same time, the paper proved that conformation changes of DNA can also lead to the fluorescence decrease of DNA-probe systems.     

Research on the interaction of cr(III) complex of genistein with DNA

The interaction of the Cr(III) complex of genistein (GEN-Cr) with calf thymus DNA (ctDNA) in Tris (pH 7.2) buffer was investigated using UV spectra, DNA melting, fluorescence spectra and viscosity. From the absorption titration experiment, no obvious red shift was found, but the notable hypochromicities were observed. When C(DNA)/C(GEN-Cr) = 3, the pi-pi* transitions of the complex at 272 nm showed a decrease in intensity of 29.1%, which indicated that there was remarkable intercalation between complex and DNA base pairs, involving a strong pi-stacking interacting between them. The binding constant for the complex was K = 1.9 x 10(5) mol x L(-1). From the melting curves of ctDNA in the absence and presence of the complex, the melting temperature of ctDNA was found to increase by 5.5 degrees C from 74 to 79.5 degrees C, owing to the increased stability of the helix in the presence of the complex that was intercalated into the double helix. The complex could emit weak luminescence in Tris buffer. The emission intensity of the complex at 340 nm increased steadily with the addition of ctDNA. The result suggested that the complex got into a hydrophobic environment inside the DNA and avoided the effect of solvent water molecules. The strong interaction of the complex and ctDNA also resulted in greatly enhanced intensity of the resonance light scattering spectra. The emission intensity of DNA-EB system at 600 nm decreased remarkably with increasing the complex concentration, which indicated that the complex could be intercalated into DNA and replace EB from the DNA-EB system. According to the classical Stern-Volmer equation, the quenching plots at 25 and 37 degrees C both appeared approximately linear. These results showed that there was one predominant quenching style in this process. Viscosity experiments were carried out by an Ubbelodhe viscometer at 20.0 (+/- 0.1) degrees C. The relative viscosity of ctDNA increased steadily with the increased in the complex. The result clearly showed that the complex could be intercalated between DNA base pairs, causing an extension of the helix, and thus increased the viscosity of DNA. The results above indicated that there is a relatively strong interaction between the GEN-Cr complex and ctDNA, and the complex could bind ctDNA mainly by intercalation. The research suggested that the GEN-Cr complex may be a promising candidate for anticancer, which deserves further research.     

Spectroscopic,Viscositic and Molecular Modeling Studies on the Interaction of 3′-Azido-Daunorubicin Thiosemicarbazone with DNA

A new daunorubicin has been synthesized and structurally characterized. The interaction of native calf thymus DNA (ctDNA) with 3′-azido-daunorubicin thiosemicarbazone (ADNRT) was investigated under simulated physiological conditions by multi-spectroscopic techniques, viscometric measurements and molecular modeling study. It concluded that ADNRT could intercalate into the base pairs of ctDNA, and the fluorescence quenching by ctDNA was static quenching type. Thermodynamic parameters calculated suggested that the binding of ADNRT to ctDNA was mainly driven by hydrophobic interactions. The relative viscosity of ctDNA increased with the addition of ADNRT, which confirmed the intercalation mode. Furthermore, molecular modeling studies corroborate the above experimental results.     

Interaction Mechanism of Trp-Arg Dipeptide with Calf Thymus DNA

The interaction between Trp-Arg dipetide (WR) and calf thymus DNA (ctDNA) in pH 7.4 Tris-HCl buffer was investigated by multi-spectroscopic techniques and molecular modeling. The fluorescence spectroscopy and UV absorption spectroscopy indicated that WR interacted with ctDNA in a minor groove binding mode and the binding constant was 4.1?×?10³. The ionic strength effect and single-stranded DNA (ssDNA) quenching effect further verified the minor groove binding mode. Circular dichroism spectroscopy (CD) was employed to measure the conformation change of ctDNA in the presence of WR. The molecular modeling results illustrated that electrostatic interaction and groove binding coexisted between them and the hydrogen bond and Van der Waals were main acting forces. All the above methods can be widely used to investigate the interaction of peptide with nucleic acids, which contributes to design the structure of new and efficient drugs.