A DFT study on the structure and radical scavenging activity of newly synthesized hydroxychalcones

Quantum‐chemical computations based on the density functional theory have been employed to study the relation between the structure and the radical scavenging activity of six newly synthesized hydroxychalcones. The three main working mechanisms, hydrogen atom transfer (HAT), stepwise electron‐transfer‐proton‐transfer, and sequential‐proton‐loss‐electron‐transfer (SPLET), were investigated, and the O–H bond dissociation enthalpy, ionization potential, proton dissociation enthalpy, and electron transfer energy parameters were computed in the gas phase and in solvents using PCM model. The geometry structure, radical, electron character, and the frontier molecular orbital were analyzed to explore the key factors that influence the radical scavenging activity of the hydroxychalcones. Results indicated that 3,4‐dihydroxychalcone (6) possessing the catechol functionality is expected to be more efficient hydrogen atom and proton donor than others. The theoretical results confirm the important role of the B‐ring and shed light on the role of the o‐dihydroxy (catechol) moiety in the antioxidant properties of hydroxychalcones. In addition, the calculated results are in good agreement with experimental values. It was found that HAT is the most favored mechanism for explaining the radical‐scavenger activity of hydroxychalcone in the gas phase, whereas SPLET mechanism is thermodynamically preferred pathway in aqueous solutions. Copyright © 2012 John Wiley & Sons, Ltd.     

The free radical scavenging activity of lespedezacoumestan toward ˙OH radical: A quantum chemical and computational kinetics study

The free radical activity of lespedezacoumestan was investigated toward hydroxyl (˙OH) radical in polar and nonpolar media using density functional theory. Four reaction mechanisms including radical adduct formation, hydrogen atom transfer, sequential single electron‐proton transfer (SET‐PT), and sequential proton loss electron transfer were considered. The rate constants and branching ratio for all possible sites of reaction were calculated and reported for the first time. According to the obtained results, lespedezacoumestan reacts faster with ˙OH radical in aqueous solution than in nonpolar media. Also, lespedezacoumestan is an excellent ˙OH radical scavenger regardless of the environment polarity.     

A quantum chemical study on the OH radical quenching by natural antioxidant fisetin

In this work, the antioxidant ability of fisetin was explored toward hydroxyl (?OH) radical in aqueous and lipid solution using density functional level of theory. Different reaction mechanisms have been studied: hydrogen atom transfer, single electron transfer followed by proton transfer, and radical adduct formation, and sequential proton loss electron transfer. Rate constants for all possible reaction sites have been calculated using conventional transition state theory in conjunction with the Collins‐Kimball theory. Branching ratios for the different channels of reaction are reported for the first time. Results show that the reactivity of fisetin toward hydroxyl (^?OH) radical takes place almost exclusively by radical adduct formation regardless of the polarity of the environment. Also, the single‐electron transfer process seems to be thermodynamically unfavorable in both media.     

Thermodynamic and kinetic analysis of the reaction between biological catecholamines and chlorinated methylperoxy radicals

The antiradical potency of catecholamines (dopamine, epinephrine, norepinephrine, L-DOPA), metabolites of dopamine (homovanillic acid, 3-methoxytyramine and 3,4-dihydroxyphenylacetic acid) and catechol towards substituted methylperoxy radicals is investigated. The thermodynamic parameters, together with the kinetic approach, are used to determine the most probable mechanism of action. The natural bond orbital and quantum theory of atoms in molecules are utilised to explain the highest reactivity of trichloromethylperoxy radical. The preferred mechanism is dependent both on the thermodynamic and kinetic parameters . The number of chlorine atoms on radical, the presence of intra-molecular hydrogen bond and number of hydroxy groups attached to the aromatic ring significantly influence the mechanism. The results suggest that sequential proton loss electron transfer (SPLET) is the most probable for reaction with methylperoxy and hydrogen atom transfer (HAT) for reaction with trichloromethylperoxy radicals, with a gradual transition between SPLET and HAT for other two radicals. Due to the significant deprotonation of molecules containing the carboxyl group, the respective anions are also investigated. The HAT and SPLET mechanisms are highly competitive in reaction with MP radical, while the dominant mechanism towards chlorinated radicals is HAT. The reactions in methanol and benzene are also discussed.     

Theoretical study on the investigation of antioxidant properties of some hydroxyanthraquinones

Anthraquinones are located in an important class of natural compounds having antioxidant properties. Quantum chemical calculations based on the density functional theory were employed to study the relationship between the structure and the antioxidant activity of four hydroxyanthraquinones. The solvation effects on the antioxidant activity were taken into account by using the conductor-like polarisable continuum model with different dielectric constants (ε = 2.25, C₆H₆; ε = 78.39, H₂O). The three antioxidant action mechanisms, hydrogen atom transfer (HAT), single electron transfer-proton transfer and sequential proton loss electron transfer (SPLET) were elucidated. The reaction enthalpies related to the steps in these mechanisms were computed in gas phase and solvents. The calculated results are in line with experimental values. The results showed that HAT was the most favourable mechanism for describing the antioxidant activity of hydroxyanthraquinones in the gas phase and in benzene, whereas in aqueous solution, SPLET represented the most thermodynamically plausible reaction pathway.     

苹果酸结构类似物抗氧化活性的DFT研究

最近从葡萄酒中鉴定并分离出两种苹果酸(MA)结构类似物：2-异丙基苹果酸(2-IPMA)和3-异丙基苹果酸(3-IPMA).使用密度泛函理论(DFT)评估了MA, 2-IPMA和3-IPMA的构象和抗氧化相关热力学性质,结果显示,2-IPMA和3-IPMA的C₂羟基具有较高的自由基清除活性.基于大多数抗氧化剂的单线态比三线态更稳定,预测2-IPMA和3-IPMA将分别在气相条件下通过双氢原子转移(dHAT),顺序双质子损失双电子转移(SdPLdET)和双电子转移质子转移(dET-PT)方式参与自由基清除途径,形成4-甲基-3-氧代戊酸和3-甲基-2-甲酰丁酸.根据低能量消耗优先原则,2-IPMA和3-IPMA优先清除自由基的途径依次为：HAT, ET-PT和SPLET.计算结果证实了当前研究的假设,并表明就反应焓热力学数据而言,两种MA类似物的抗氧化能力有利于HAT途径.     

A mechanistic dichotomy in concerted versus stepwise pathways in hydride and hydrogen transfer reactions of NADH analogues

A mechanistic dichotomy of one‐step versus stepwise pathways in hydride and hydrogen transfer reactions of NADH analogues is discussed including the relation between two pathways: a continuous change versus a discontinuous change of the mechanism. Examples of stepwise electron–proton–electron transfer through a charge transfer (CT) complex in hydride transfer from NADH analogues to hydride acceptors are presented including the detection and the reactivity of the intermediate, that is, radical cations of NADH analogues. The relation between stepwise versus one‐step mechanisms of hydride and hydrogen transfer reaction of NADH analogues is also clarified by showing examples of the change of the mechanism including the borderline. Copyright © 2008 John Wiley & Sons, Ltd.     

The ESIPT mechanism of dibenzimidazolo diimine sensor: a detailed TDDFT study

Spectroscopic investigations on excited state proton transfer of a new dibenzimidazolo diimine sensor (DDS) were reported by Goswami et al. recently. In our present work, based on the time‐dependent density functional theory (TDDFT), the excited‐state intramolecular proton transfer (ESIPT) mechanism of DDS is studied theoretically. Our calculated results reproduced absorption and fluorescence emission spectra of the previous experiment, which verifies that the TDDFT method we adopted is reasonable and effective. The calculated dominating bond lengths and bond angles involved in hydrogen bond demonstrate that the intramolecular hydrogen bond is strengthened. In addition, the phenomenon of hydrogen bond reinforce has also been testified based on infrared vibrational spectra. Further, hydrogen bonding strengthening manifests the tendency of ESIPT process. The calculated frontier molecular orbitals further demonstrate that the excited state proton transfer is likely to occur. According to the calculated results of potential energy curves along O–H coordinate, the potential energy barrier of about 5.02 kcal/mol is discovered in the S₀ state. However, a lower potential energy barrier of 0.195 kcal/mol is found in the S₁ state, which demonstrates that the proton transfer process is more likely to happen in the S₁ state than the S₀ state. In other words, the proton transfer reaction can be facilitated based on the photo‐excitation effectively. Moreover, the phenomenon of fluorescence quenching could be explained based on the ESIPT mechanism. Copyright © 2015 John Wiley & Sons, Ltd.     

The saturated five‐membered heterocyclic molecules as organic hydride donors: a computational study

Several five‐membered heterocyclic molecules were studied theoretically as organic hydride donors. The density functional theory and ab initio methods are employed to study the direct one‐step or multistep sequence suggested for the hydride transfer from the selected molecules: H atom/electron, electron/proton/electron or electron/H atom. Out of the three multistep mechanisms, electron/H atom seems to be a probable pathway in the presence of suitable catalyst/photoreaction that can cause ionization. In the lack of such catalyst/photoreaction, the direct hydride transfer seems to be most probable with the presence of suitable hydride acceptor. A detailed mechanism of the hydride transfer from the five‐membered heterocylic compounds is important in understanding chemical and biological reactions and required for scientifically designing and synthesizing new desired five‐membered heterocyclic compounds as organic hydride donor. Copyright © 2014 John Wiley & Sons, Ltd.     

Theoretical investigation on the excited‐state intramolecular proton transfer mechanism of 2‐(2′‐benzofuryl)‐3‐hydroxychromone

Spectroscopic studies on excited‐state proton transfer of a new chromophore 2‐(2′‐benzofuryl)‐3‐hydroxychromone (BFHC) have been reported recently. In the present work, based on the time‐dependent density functional theory (TD‐DFT), the excited‐state intramolecular proton transfer (ESIPT) of BFHC is investigated theoretically. The calculated primary bond lengths and angles involved in hydrogen bond demonstrate that the intramolecular hydrogen bond is strengthened. In addition, the phenomenon of hydrogen bond reinforce has also been testified based on infrared (IR) vibrational spectra as well as the calculated hydrogen bonding energies. Further, hydrogen bonding strengthening manifests the tendency of excited state proton transfer. Our calculated results reproduced absorbance and fluorescence emission spectra of experiment, which verifies that the TD‐DFT theory we used is reasonable and effective. The calculated Frontier Molecular Orbitals (MOs) further demonstrate that the excited state proton transfer is likely to occur. According to the calculated results of potential energy curves along O―H coordinate, the potential energy barrier of about 14.5 kcal/mol is discovered in the S₀ state. However, a lower potential energy barrier of 5.4 kcal/mol is found in the S₁ state, which demonstrates that the proton transfer process is more likely to happen in the S₁ state than the S₀ state. In other words, the proton transfer reaction can be facilitated based on the photo‐excitation effectively. Moreover, the phenomenon of fluorescence quenching could be explained based on the ESIPT mechanism. Copyright © 2015 John Wiley & Sons, Ltd.     

Exploring excited‐state proton transfer mechanism for 9,10‐dihydroxybenzo[h]quinolone

In this work, we mainly focus on the excited‐state intramolecular proton transfer mechanism of a new molecule 9,10‐dihydroxybenzo[h]quinoline (9‐10‐HBQ). Within the framework of density functional theory and time‐dependent density functional theory methods, we have theoretically investigated its excited‐state dynamical process and our theoretical results successfully reappeared previous experimental electronic spectra. The ultrafast excited‐state intramolecular proton transfer process occurs in the first excited state (S₁ state) forming 9‐10‐HBQ‐PT1 structure without potential energy barrier along with hydrogen bond (O₃–H₄···N₅). Then the second proton may transfer via another intramolecular hydrogen bonded wire (O₁–H₂···N₃) with a moderate potential energy barrier (about 7.69 kcal/mol) in the S₁ state forming 9‐10‐HBQ‐PT2 configuration. After completing excited‐state dynamical process, the molecule on the first excited electronic state would come back to the ground state. We not only clarify the excited‐state dynamical process for 9‐10‐HBQ but also put forward new predictions and successfully explain previous experimental results.     

Protonation of captodative trifluoromethylated aminoalkenes and isomerization of their salts. An ab initio study

A study of the regioselectivity of protonation of captodative trifluoromethylated enamines was carried out using MP2/6‐311 + G(d,p) calculations and the natural bond orbital analysis. The central issue of this research concerns the influence of the electron‐withdrawing group, which is not capable of the π,π‐conjugation, on the properties of captodative enamines and their salts. The presence of CF₃ group in such type of enamines levels the energy of their N‐protonated and C‐protonated forms. The transition states were found for both intramolecular and intermolecular processes of the proton transfer. The more possible mechanism of the isomerization of enammonium and iminium cations includes the proton transfer from N‐protonated form to olefinic carbon atom of the starting enamine. The transition state energies, which correspond to intermolecular process, are relatively low (11–13 kcal mol^–1) in contrast to the intramolecular pathway (64–69 kcal mol^–1). Copyright © 2011 John Wiley & Sons, Ltd.     

Noncovalent Hydrogen Isotope Effects in Paramagnetic Molecules

Zero-point energies (ZPE) of intermolecular, non-bonded vibrations and isotope effects, induced by noncovalent interactions, are computed for paramagnetic molecules. They appear to be not significant for complexation of HO₂ and oxygen with C–H bonds and results to isotope effect, which deviates from unit by 5–10%. However, ZPE and isotope effects in complexes of HO₂ and nitroxyl radicals with water are larger and reach 50–70%. The largest effect, about 12, is found for complexation of hydrogen atom with water. Complexation of nitroxyl and peroxy radicals by hydrogen bonds is accompanied by transfer of spin density of unpaired electron from radical to the ligand molecules and induces high field paramagnetic shifts of the ligand NMR lines. It evidences that the spin transfer via intermolecular bonds occurs by mechanism of spin polarization.     

The photochemistry of the self‐healing chromophore Disperse Orange 11

Recent interest in the self‐healing ability of the laser dye 1‐amino‐2‐methylanthraquinone, Disperse Orange 11, has lead us to investigate the possible alternative mechanisms of action, either intramolecular proton transfer (PT) or twisted intramolecular charge transfer (TICT) formation. AMPAC semiempirical PM3 CI (all single excited configurations) potential energy surfaces searches have been conducted with either reaction mechanism. Based purely on the potential energy surface results, no state, S0, T1, or S1, seems especially likely to be kinetically favorable for PT. The T1 state is favorable thermodynamically for PT. However, the S1 state TICT reaction is both thermodynamically favorable and kinetically preferred over all PT reactions. There is also a favorable T1 TICT reaction, but much slower kinetically on the triplet surface than S1 TICT. The Wentzel–Kramers–Brillouin (WKB) method has been used to ascertain proton tunneling contributions to PT. Even with proton tunneling, S1 TICT is still more highly favored, though proton tunneling could make the T1 PT reaction competitive depending on the rate of intersystem crossing. We also examine spectroscopic properties of PT transfer and TICT reaction path entities in comparison with published experimental evidence. However, this comparison leads to ambiguous findings that suggest that electronic spectral properties alone will not fully clarify the mechanism. Overall, results suggest that the TICT mechanism is the most likely for optical damage and self‐repair for Disperse Orange 11, and might be considered for the damage and repair mechanisms for other organic solid state laser materials. Copyright © 2012 John Wiley & Sons, Ltd.     

Theoretical determination of K X-ray transition energy and probability values for highly charged ions of lanthanum and cerium

The interaction between positronium and a helium atom is studied using the 5-body classical trajectory Monte Carlo method. We present the total cross sections for the dominant channels, namely for single ionization of the target, and ionization of the projectile, resulting from pure ionization and also from electron transfer (capture or loss) processes for 1–5.7 a.u. incident velocities of the positronium atom. Our results were compared with the calculated data using hydrogen projectiles having the same velocities as well as with the experimental data in collisions between H and He [R.D. DuBois, Á. Kövér, Phys. Rev. A 40, 3605 (1989)]. We analyze the similarities and deviations for ionization of helium atoms by positronium and hydrogen projectile impact.     

Theoretical study of the smiles rearrangement in the activation mechanism of proton pump inhibitors

This work describes the conformational behavior and the activation mechanism of timoprazole and substituted prazoles from the most stable conformation to the sulphenic acid. The stability of the conformers can be explained by the presence of hydrogen bonds, stereoelectronic effect because of the lone pair of sulfur atom and the N^…C and N^…S interactions. The first step of the Smile rearrangement is a nucleophilic addition to benzimidazole by pyridine moiety, which depends on the difference of the electron population of the atoms involved in the attack. The second step produces sulphenic acid by a concerted reaction where breaking of the S–C bond goes along with a proton migration, and is determined by the electron population of the sulfur atom. Copyright © 2011 John Wiley & Sons, Ltd.     

DNA strand breaks induced by concerted interaction of H radicals and low-energy electrons

We propose a mechanism of DNA single strand breaks induced by low-energy electrons. Density functional theory calculations have been performed on a neutral, hydrogenated, and/or negatively charged nucleotide of cytosine in the gas phase to identify barriers for the phosphate-sugar O–C bond cleavage. Attachment of the first excess electron induces intermolecular proton transfer to cytosine. The resulting neutral radical of hydrogenated cytosine binds another excess electron, and the excess charge is localized primarily on the C6 atom. A barrier encountered for proton transfer from the C2’ atom of the adjacent sugar unit to the C6 atom of cytosine is 3.6 and 5.0 kcal/mol, based on the MPW1K and B3LYP electronic energies corrected for zero-point vibrations, respectively. The proton transfer is followed by a barrier-free sugar-phosphate C–O bond cleavage. The proton transfer is impossible for the neutral nucleotide, as there is no local minimum for the product. In the case of anionic and hydrogenated nucleotides the same barrier determined at the B3LYP level is as large as 29.3 and 22.4 kcal/mol respectively. This illustrates that the consecutive hydrogenation and electron attachment make the nucleotide of cytosine susceptible to a strand break. The rate of the C–O bond cleavage in the anion of hydrogenated nucleotide of cytosine is estimated to be ca. 10¹⁰  s^-1. The proposed mechanism proceeds through bound anionic states, not through metastable states with finite lifetimes and discrete energy positions with respect to the neutral target. The results suggest that at least for DNA without hydration even very low-energy electrons may cleave the DNA backbone.     

Structural dynamics of 4‐pyrimidone in lower‐lying excited States

The structural dynamics of 4‐pyrimidone (4PMO) in the A‐ and B‐band absorptions was studied by using the resonance Raman spectroscopy combined with quantum chemical calculations to better understand whether the excited state intramolecular proton‐transfer (ESIPT) reaction occurs in Franck–Condon regions or not. The transition barrier for the ground state proton‐transfer tautomerization reaction between 3(H) (I) and hydroxy (II) was determined to be 165 kJ·mol⁻¹ in vacuum on the basis of the B3LYP/6‐311++G(d,2p) level of theory calculations. Two ultraviolet absorption bands of 4PMO were, respectively, assigned as π_H→π*_L and π_H→π*_L+1 transitions. The vibrational assignments were done on the basis of the Fourier transform (FT)‐Raman and FT‐infrared (IR) measurements, the density‐functional theory computations and the normal mode analysis. The A‐ and B‐band resonance Raman spectra of 4PMO were measured in water, methanol and acetonitrile. The structural dynamics of 4PMO was obtained through the analysis of the resonance Raman intensity pattern. We discuss the similarities in the structural dynamics of 4PMO and 2‐thiopyrimidone (2TPM), and the results were used to correlate to the intramolecular hydrogen‐atom‐transfer process as observed by matrix‐isolation IR experiments for 4PMO. A variety of NH/CH bend modes + C = O stretch mode mark the hydrogen‐detachment‐attachment or ESIPT reaction initiated in Franck–Condon region for 4PMO and 2TPM. Copyright © 2013 John Wiley & Sons, Ltd.     

Proton transfer reactions in apolar aprotic solvents

Proton transfer reactions are advantageously investigated in low‐dielectric‐constant apolar aprotic solvents where specific solute–solvent interactions are greatly minimized, if not eliminated, and proton transfer occurs directly. An intriguing feature of these reactions is their general acid/base‐catalyzed kinetics with a timescale over microseconds to minutes. Proton‐coupled electron transfer (PCET), a great promise in the development of renewable energy sources, is an emerging application of the reactions. This article is an updated review of the post‐1980 developments in understanding the mechanism of proton transfer reactions, quantitative structure–reactivity relationships, acid/base‐catalyzed molecular rearrangements, reverse trends between acidity parameters and ¹³C δ_co (a measure of electron population at the carboxyl carbon) in aromatic carboxylic acids, coupling of proton transfer with electron transfer, and PCET reactions in suitably designed model systems in apolar aprotic solvents for renewable energy devices. Copyright © 2015 John Wiley & Sons, Ltd.