自由基-分子反应:F+Propene(CH2CHCH3)的从头算研究

采用从头算CCSD(T)/6-311 G(2d,2p)//B3LYP/6-311G(d,p)方法,研究了自由基-分子反应F CH2CHCH3的各种不同的反应通道．该反应主要是通过复合物形成机制进行,即F分别加到碳碳双键的两端形成自由基复合物1和2．这两种亚稳态自由基会解离成三种产物:H C3H5F、CH3 C2H3F和HF C3H5．理论计算结果表明,生成CH3 C2H3F是反应的主要通道,而生成H C3H5F和HF C3H5对产物也有一定的贡献．这一结果和实验符合得很好．     

CH2F自由基与HNCO反应机理的理论研究

采用密度泛函理论的B3LYP方法,在6-311 G(d,p)基组水平上研究了CH2F自由基与HNCO的微观反应机理,优化了反应过程中的反应物、中间体、过渡态和产物的几何构型,通过振动分析验证了所有可能的过渡态;并且还在QCISD(T)/6- 311 G**//B3LYP/6-311 G(d,p)机组水平上计算了相应单点能．找到了CH2F自由基与HNCO反应的7条可行的反应通道,对结果的分析表明,CH2F HNCO→TS8→IM5→TS9→IM4通道的控制步骤活化能最低,是该反应的主要通道．     

氟原子与反式1,3-丁二烯分子反应动力学的理论研究

在CCSD(T)／6-311g(d,p)／B3LYP／6-311g(d,p)的基础上对F原子与反式的1,3-丁二烯的反应体系进行了理论研究．计算中发现,这个反应体系有两个形成中间复合物的通道．同时,理论计算结果表明,在交叉分子束的实验中探测到的H原子是通过这两个形成长寿命的中间复合物的通道产生的．而通过同一个复合物通道,生成C2H3 C2H3F的速率要比生成氢原子的低,在交叉分子束实验中要探测到C2H3 C2H3F通道也是很困难的．理论分析的结果还表明, HF也可能是反应中的一个产物,它主要是通过直接抽取反应产生的．     

AIM Study on the Reaction of CH2SH Radical with Fluorine Atom

采用MP2(Full)/6-311G(d,p)、QCISD(T)/6-311++G(2df,p)和B3LYP/6-311G(d,p)方法研究了CH2SH自由基与F原子的反应．F原子通过进攻自由基上的C原子或S原子形成三种不同的反应通道．计算结果表明F原子进攻自由基上的C原子生成CH2S和HF为主要的反应通道．对反应进程中若干关键点进行了电子密度拓扑分析，找到了该反应的结构过渡区(结构过渡态)和能量过渡态．计算结果表明，对于比较显著的吸热或放热反应，其结构过渡区范围很小，对于吸热或放热不太显著的反应，结构过渡区范围较大.     

甲醇－乙醚团簇的多光子电离和从头算

在355 nm波长下用激光电离飞行时间质谱装置研究了氢键团簇甲醇/乙醚混合团簇的多光子电离,飞行时间质谱仪观测到一系列质子化团簇,为了探讨质子化团簇的形成机理,在B3LYP/6-31 G(d,p)//B3LYP/6-311 G(d,p)基组水平上计算了CH30H-(C2H5)2O离子和中性团簇的稳定几何结构和解离通道和解离能,发现存在一个质子转移过程,解离产物主要为CH3O和[(C2H5)2O]H .     

4,6-二甲氧基-2-嘧啶氨基甲酸甲酯分子结构与光谱

运用密度泛函理论B3LYP方法,6-311G*和6-311 G*基函数对4,6-二甲氧基-2-嘧啶氨基甲酸甲酯分子结构与光谱性质进行理论研究,得到分子的平衡结构参数和最大吸收波长.4,6-二甲氧基-2-嘧啶氨基甲酸甲酯分子具有Cs对称性和较大的前线轨道能隙值.基函数对计算结果无影响.     

Theoretical Study on Reaction Mechanism of Aluminum-Water System

在B3LYP/6-311+G(d,p)和QCISD(T)/6-311++G(d,p) 水平上，对气相中铝与水的反应进行了计算. 理论计算结果表明，铝水反应经过了三条可能的反应通道并且涉及了四个异构体、七个过渡态和两种产物. 其中两条反应通道所涉及的中间物和产物已被实验测得. 同时，在298 K和2000 K计算了铝水反应的焓变和吉布斯自由能，一些计算结果与以前的计算和实验结果吻合较好.     

氧分子和苯酚自由基反应机理的理论研究

用密度泛函理论B3LYP方法对氧分子和苯酚自由基反应机理进行了研究.在B3LYP/6-31G(d,p)水平上优化得到了反应路径上的反应物、中间体、过渡态和产物的几何构型和谐振频率;并在B3LYP/6-311 G(2df,2pd)水平上进行了单点能计算.计算结果表明,苯酚是O2同苯酚自由基Ⅰ反应的主要产物,苯酚过氧自由基Ⅴ和Ⅵ是此反应的次要产物.苯酚过氧自由基Ⅴ的主要后继反应中,环化形成[3.2.1]双环氧桥自由基Ⅶ是主要的反应路径,Ⅶ可以进一步开环反应,形成环裂解产物1,2和1,4二醛.     

20,20-二氯-1,10-二甲氧基三环[5,4,0,012,19]十一碳 -1,5,6-三烯结构和性质的理论研究

在RHF/6-31G、B3LYP/6-31G和MP2/6-31G水平下优化了标题化合物的平均几何构型,用B3LYP/6-31G方法计算了该化合物的红外光谱.并用GIAO分别在B3LYP/6-31G、B3LYP/6-311G和B3LYP/6-311++G水平对该化合物的核磁共振谱进行了研究.计算结果与实验结果吻合很好.同时对在合成过程中发现的两个中间产物进行了理论计算,研究证实了合成标题化合物时中间产物的存在.     

Ab initio Study on Structures and Isomerization of Magnesium Fluorosilylenoid H2SiFMgF

采用从头算分子轨道理论对镁氟类硅烯H2SiFMgF的构型及异构化进行了研究. 在B3LYP/6-31G(d,p)和G3MP2B3水平上找出四种构型及三种过渡态，并进行了全优化. 在B3LYP/6-31G(d,p)的优化参数基础上，得到了各构型的振动频率，计算了e29Si的化学位移.在B3LYP/6-31G(d,p)水平上，以四氢呋喃为溶剂，采用可极化连续模型研究了溶剂化效应. 并采用内察反应坐标方法对过渡态进行了验证. 研究结果表明，四面体结构具有最低的能量，最稳定. 四面体、三元环和p-络合物结构为实验可探测结构，σ-络合物结构具有最高能量，也是不能存在的构型     

IR Vibrational spectra of H-bonded complexes of adenine, 2-aminopurine and 2-aminopurine<Superscript>+</Superscript> with cytosine and thymine: Quantum-chemical study

Using theoretical study on the B3LYP/6-311++G(d,p) level of theory, we have compared vibrational spectra of 2-aminopurine (as neutral or protonated at N1 atom species) with adenine and H-bonded complexes of 2-aminopurine (as neutral or protoned at N1 atom species) · cytosine or 2-aminopurine · thymine with adenine · cytosine and adenine · thymine base pairs. The nature of the base pairing between adenine, 2-aminopurine, 2-aminopurine⁺ and cytosine or thymine have been investigated by means of quantum-mechanical calculations. We have investigated the effect of the hydrogen bond formation on the vibrational spectra of the investigated base pairs. The main differences in the vibrational spectra as for bases so for base pairs have been observed in the high-frequency region.     

M-RNA碱基复合物(M=Ca~+和Mg~+)特征振动的密度泛函理论分析

采用密度函数理论的B3LYP交换关联能泛函在6-311+G(2df,2p)基组水平上,优化计算了Ca+,Mg+与RNA碱基嘧啶各同分异构体形成稳定复合物的结构,发现其中C1M,T1M和U1M(M=Ca+和Mg+)为最稳定复合物,并对这些复合物红外振动进行了计算.计算结果显示碱基嘧啶单体主要存在的两个红外特征振动,是由环振动和环外氧原子及与其成键的环上碳原子之间产生伸缩振动引起的.当形成复合物时,由于离子的参与,使单体碱基分子的振动情况发生了改变,主要表现在离子倾向于与环外负电子原子N和O原子成键,使与离子直接作用环外原子参与的特征振动频率减小,谱线红移;不与离子直接作用环外原子引起的特征振动频率增大,谱线蓝移.     

胞嘧啶分子拉曼光谱研究

本文通过实验测量了胞嘧啶的常规拉曼光谱,有四个弱拉曼峰在以前胞嘧啶的常规拉曼光谱中未检测到。采用密度泛函(Density Function Theory)B3LYP/6-31+G(d,p)计算了胞嘧啶分子的拉曼光谱。结合理论计算结果对实验拉曼光谱振动模式进行了指认,并对其中几个拉曼峰非常弱的原因进行了分析。     

Reaction of C2HCl2+O2: Combined TR-FTIR Spectroscopy and Electronic Structure

用时间分辨傅立叶变换红外发射光谱(TR-FTIR)和G3MP2//B3LYP/6-311G(d,p)水平的电子结构计算研究了环境化学中重要的二氯代乙烯自由基C₂HCl₂和O₂分子的基元反应通道和机理. 通过0.5 cm^-1高分辨的TR-FTIR发射光谱观察到三种振动激发态产物CO₂、CO和HCl,由光谱拟合得到CO和HCl的振动态分布,结合电子结构计算的反应势能曲线,提出反应机理和能量上最可能的反     

Role of electron correlation in the polydeprotonation of benzene to form trianions

Computations for anion, dianions, and trianions of benzene are carried out to study the role of electron correlation in the polydeprotonation of benzene leading to benzene trianions both in the singlet and triplet states. The computations, while assessing the use of polarization and diffuse functions, are performed with Møller–Plesset second‐order (MP2) perturbation theory and coupled‐cluster theory up to the level of CCSD(T)/6‐311++G(d,p)//MP2/6‐311++G(d,p), and with density functional theory (DFT) employing a hybrid, B3LYP, and a meta‐hybrid, M05‐2X, exchange‐correlation functionals with Gaussian basis set 6‐311++G(d,p) and correlation consistent basis set aug‐cc‐pVDZ. The deprotonation energies, including zero‐point energy correction, of benzene anion and dianions are found to be highly sensitive to the quantum mechanical method and the basis set used. The formation of dianions and trianions, where the anionic centers lie adjacent to each other, is observed with unusual behavior in the deprotonation energy and the geometrical parameters obtained from the different level of the theories. The two exchange‐correlation functionals compared show contrasting and unusual results for the trianionic species particularly for the triplet states, even if the diffuse functions are included in the basis set. Besides this, the ortho‐dianion and 1,3,5‐trianion are predicted to be ground‐state triplet at CCSD(T)/6‐311++G(d,p)//MP2/6‐311++G(d,p) and DFT/M05‐2X/6‐311++G(d,p) levels, whereas DFT/B3LYP/6‐311++G(d,p) predicts meta‐dianion and 1,2,3‐trianion to be ground‐state triplet where all the anionic centers lie adjacent to each other. Copyright © 2014 John Wiley & Sons, Ltd.     

Theoretical analysis of the tautomer composition of cytosine isolated in an Ar matrix

The IR spectra of cytosine and its five tautomers are calculated and analyzed in the B3LYP/6-31G(d) approximation. Comparison of calculated and experimental spectra showed that, in the isolated state, there occur four tautomeric forms, cis, trans, trans-amino-hydroxy, and cis-imino-oxo, as well as one canonical form of cytosine.     

Electrocyclic [1,5] hydrogen shift in the thermal elimination kinetics of phenyl acetate and p-tolyl acetate in the gas phase: a density functional theory study

The kinetics and mechanisms of thermal decomposition of phenyl acetate and p-tolyl acetate in the gas phase were studied by means of electronic structure calculations using density functional theory methods: B3LYP/6-31G(d,p), B3LYP/6-31++G(d,p), B3PW91/6-31G(d,p), B3PW91/6-31++G(d,p), MPW1PW91/6-31G(d,p), MPW1PW91/6-31++G(d,p), PBE/6-31G(d,p) and PBE/6-31++G(d,p). Two possible mechanisms have been considered: mechanism A is a stepwise process involving electrocyclic [1,5] hydrogen shift to eliminate ketene through concerted six-membered cyclic transition-state structure, followed by tautomerisation of cyclohexadienone or by 4-methyl cyclohexadienone intermediate to give the corresponding phenol. Mechanism B is a one-step concerted [1,3] hydrogen shift through a four-membered cyclic transition-state geometry, to produce ketene and phenol or p-cresol. Theoretical calculations showed reasonable agreement with experimental activation parameters when using the Perdew, Burke and Ernserhof (PBE)functional, through the stepwise [1,5] hydrogen-shift mechanism. For mechanism B, large deviation for the entropy of activation was observed. No experimental data were available for p-tolyl acetate; however, theoretical calculations showed similar results to phenyl acetate, thus supporting the stepwise mechanism for both phenyl acetate and p-tolyl acetate.     

DNA strand breaks induced by concerted interaction of H radicals and low-energy electrons

We propose a mechanism of DNA single strand breaks induced by low-energy electrons. Density functional theory calculations have been performed on a neutral, hydrogenated, and/or negatively charged nucleotide of cytosine in the gas phase to identify barriers for the phosphate-sugar O–C bond cleavage. Attachment of the first excess electron induces intermolecular proton transfer to cytosine. The resulting neutral radical of hydrogenated cytosine binds another excess electron, and the excess charge is localized primarily on the C6 atom. A barrier encountered for proton transfer from the C2’ atom of the adjacent sugar unit to the C6 atom of cytosine is 3.6 and 5.0 kcal/mol, based on the MPW1K and B3LYP electronic energies corrected for zero-point vibrations, respectively. The proton transfer is followed by a barrier-free sugar-phosphate C–O bond cleavage. The proton transfer is impossible for the neutral nucleotide, as there is no local minimum for the product. In the case of anionic and hydrogenated nucleotides the same barrier determined at the B3LYP level is as large as 29.3 and 22.4 kcal/mol respectively. This illustrates that the consecutive hydrogenation and electron attachment make the nucleotide of cytosine susceptible to a strand break. The rate of the C–O bond cleavage in the anion of hydrogenated nucleotide of cytosine is estimated to be ca. 10¹⁰  s^-1. The proposed mechanism proceeds through bound anionic states, not through metastable states with finite lifetimes and discrete energy positions with respect to the neutral target. The results suggest that at least for DNA without hydration even very low-energy electrons may cleave the DNA backbone.     

二苯铬及其衍生物的核磁共振碳谱的理论研究

用量子化学从头算（ab initio）方法，在B3LYP/6-31G(d，p)水平上，优化了二苯铬及其衍生物的构型，并进行了振动分析. 3种化合物的振动光谱中均未出现虚频率. 在此基础上，在B3LYP/6-31++G(d，p)水平上，采用GIAO方法，计算了3种化合物的核磁共振碳谱，所得结果与实验值基本吻合.