A 3-approximation algorithm for the subtree distance between phylogenies

In this paper, we give a (polynomial-time) 3-approximation algorithm for the rooted subtree prune and regraft distance between two phylogenetic trees. This problem is known to be NP-complete and the best previously known approximation algorithm is a 5-approximation. We also give a faster fixed-parameter algorithm for the rooted subtree prune and regraft distance than was previously known.     

An approximation algorithm for sorting by reversals and transpositions

Genome rearrangement algorithms are powerful tools to analyze gene orders in molecular evolution. Analysis of genomes evolving by reversals and transpositions leads to a combinatorial problem of sorting by reversals and transpositions, the problem of finding a shortest sequence of reversals and transpositions that sorts one genome into the other. In this paper we present a 2k-approximation algorithm for sorting by reversals and transpositions for unsigned permutations where k is the approximation ratio of the algorithm used for cycle decomposition. For the best known value of k our approximation ratio becomes 2.8386+δ for any δ>0. We also derive a lower bound on reversal and transposition distance of an unsigned permutation.     

A note on the generalized min-sum set cover problem

In this paper, we consider the generalized min-sum set cover problem, introduced by Azar, Gamzu, and Yin (STOC 2009). Bansal, Gupta, and Krishnaswamy (SODA 2010) give a 485-approximation algorithm for the problem. We are able to alter their algorithm and analysis to obtain a 28-approximation algorithm, improving the performance guarantee by an order of magnitude. We use concepts from α-point scheduling to obtain our improvements.     

Approximation algorithms for <Emphasis Type="Italic">k</Emphasis>-echelon extensions of the one warehouse multi-retailer problem

In this paper, we consider k-echelon extensions of the deterministic one warehouse multi-retailer problem. We give constant factor approximation algorithms for some of these extensions when k is fixed. We focus first on the case without backorders and we give a \((2k-1)\)-approximation algorithm under general assumptions on the evolution of the holding costs as products move toward the final customers. We then improve this result to a k-approximation when the holding costs are monotonically non-increasing or non-decreasing (which is a natural situation in practice). Finally we address problems with backorders: we give a 3-approximation for the one-warehouse multi-retailer problem with backlog and a k-approximation algorithm for the k-level Joint Replenishment Problem with backlog (a variant where inventory can only be kept at the final retailers). Ours results are the first constant approximation algorithms for those problems. In addition, we demonstrate the potential of our approach on a practical case. Our preliminary experiments show that the average optimality gap is around 15%.     

带惩罚的容错设施布局问题的近似算法

在带惩罚的容错设施布局问题中, 给定顾客集合、地址集合、以及每个顾客和各个地址之间的连接费用, 这里假设连接费用是可度量的. 每位顾客有各自的服务需求, 每个地址可以开设任意多个设施, 顾客可以被安排连接到某些地址的一些开设的设施上以满足其需求, 也可以被拒绝, 但这时要支付拒绝该顾客所带来的惩罚费用. 目标是确定哪些顾客的服务需求被拒绝并开设一些设施, 将未被拒绝的顾客连接到不同的开设设施上, 使得开设费用、连接费用和惩罚费用总和最小. 给出了带惩罚的容错设施布局问题的线性整数规划及其对偶规划, 进一步, 给出了基于其线性规划和对偶规划舍入的4-近似算法.     

带有异常点的平方度量设施选址问题

传统的设施选址问题一般假设所有顾客都被服务,考虑到异常点的存在不仅会增加总费用（设施的开设费用与连接费用之和）,也会影响到对其他顾客的服务质量。研究异常点在最终方案中允许不被服务的情况,称之为带有异常点的平方度量设施选址问题。该问题是无容量设施选址问题的推广。问题可描述如下：给定设施集合、顾客集,以及设施开设费用和顾客连接费用,目标是选择设施的子集开设以满足顾客的需求,使得设施开设费用与连接费用之和最小。利用原始对偶技巧设计了近似算法,证明了该算法的近似比是9。     

Approximation algorithms for the test cover problem

In the test cover problem a set of m items is given together with a collection of subsets, called tests. A smallest subcollection of tests is to be selected such that for each pair of items there is a test in the selection that contains exactly one of the two items. It is known that the problem is NP-hard and that the greedy algorithm has a performance ratio O(log m). We observe that, unless P=NP, no polynomial-time algorithm can do essentially better. For the case that each test contains at most k items, we give an O(log k)-approximation algorithm. We pay special attention to the case that each test contains at most two items. A strong relation with a problem of packing paths in a graph is established, which implies that even this special case is NP-hard. We prove APX-hardness of both problems, derive performance guarantees for greedy algorithms, and discuss the performance of a series of local improvement heuristics. Partially supported by the Future and Emerging Technologies Programme of the EU under contract number IST-1999-14186 (ALCOM-FT).Partially supported by a Merck Computational Biology and Chemistry Program Graduate Fellowship from the Merck Company Foundation.Also Iceland Genomics CorporationPartially supported by subcontract No. 16082-RFP-00-2C in the area of ``Combinatorial Optimization in Biology (XAXE),' Los Alamos National Laboratories, and NSF grant CCR-0105548.Mathematics Subject Classification: 90B27     

A primal-dual approximation algorithm for stochastic facility location problem with service installation costs

We consider the stochastic version of the facility location problem with service installation costs. Using the primal-dual technique, we obtain a 7-approximation algorithm.     

Complexity and approximation of an area packing problem

Motivated by an application in mobile telecommunication systems, we investigate a packing problem in which items are specified in terms of area constraints. We establish strong _boxclose{{\mathcal {NP}}}-hardness of this problem, provide a linear time 3-approximation algorithm, and discuss the combinatorics of a special case.     

Scheduling Reclaimer Operations in the Stockyard to Minimize Makespan

This paper considers a reclaimer scheduling problem in which one has to collect bulk material from stockpiles in the quay in such a way that the time used is minimized. When reclaimers are allowed to work on the same stockpile simultaneously, a fully polynomial time approximation scheme (FPTAS) is designed. Further, we present a 2-approximation algorithm in the case that any stockpile can be handled by only one reclaimer at a time. When the number of reclaimers is two, we give a 3/2-approximation algorithm. Numerical experiments show that the algorithms perform much better than our worst case analysis guarantees.     

Approximation algorithms for the single allocation problem in hub-and-spoke networks and related metric labeling problems

This paper deals with a single allocation problem in hub-and-spoke networks. We present a simple deterministic 3-approximation algorithm and randomized 2-approximation algorithm based on a linear relaxation problem and a randomized rounding procedure. We handle the case where the number of hubs is three, which is known to be NP-hard, and present a (5/4)-approximation algorithm.The single allocation problem includes a special class of the metric labeling problem, defined by introducing an assumption that both objects and labels are embedded in a common metric space. Under this assumption, we can apply our algorithms to the metric labeling problem without losing theoretical approximation ratios. As a byproduct, we also obtain a (4/3)-approximation algorithm for an ordinary metric labeling problem with three labels.     

平方度量动态设施选址问题的近似算法

研究了单阶段度量设施选址问题的推广问题平方度量动态设施选址问题. 研究中首先利用原始对偶技巧得到 9-近似算法, 然后利用贪婪增广技巧将近似比改进到2.606, 最后讨论了该问题的相应变形问题.     

Approximating the balanced minimum evolution problem

We prove a strong inapproximability result for the Balanced Minimum Evolution Problem. Our proof also implies that the problem remains NP-hard even when restricted to metric instances. Furthermore, we give a MST-based 2-approximation algorithm for the problem for such instances.     

Efficient algorithms for wavelength assignment on trees of rings

A fundamental problem in communication networks is wavelength assignment (WA): given a set of routing paths on a network, assign a wavelength to each path such that the paths with the same wavelength are edge-disjoint, using the minimum number of wavelengths. The WA problem is NP-hard for a tree of rings network which is well used in practice. In this paper, we give an efficient algorithm which solves the WA problem on a tree of rings with an arbitrary (node) degree using at most 3L wavelengths and achieves an approximation ratio of 2.75 asymptotically, where L is the maximum number of paths on any link in the network. The 3L upper bound is tight since there are instances of the WA problem that require 3L wavelengths even on a tree of rings with degree four. We also give a 3L and 2-approximation (resp. 2.5-approximation) algorithm for the WA problem on a tree of rings with degree at most six (resp. eight). Previous results include: 4L (resp. 3L) wavelengths for trees of rings with arbitrary degrees (resp. degree at most eight), and 2-approximation (resp. 2.5-approximation) algorithm for trees of rings with degree four (resp. six).     

线形网络上单台车辆分群调度问题

本文研究线形网络上单台车辆分群调度问题:若干客户分布在一条直线上,它们被划分成若干个连续子集,其中每个子集称为一个群;每个客户有一个释放时间和一个服务时间;一台机器服务所有客户,且要求每个群内的客户连续服务;目标为极小化时间表长。该问题分两种形式:返回型和不返回型。返回型的时间表长定义为机器服务完所有客户后返回其初始位置的时间;不返回型的时间表长则定义为所有客户的最大完工时间。我们的结果是:对每个客户服务时间为零的情形,证明了两种形式均可在O(n²) 时间内解决;对每个客户服务时间任意的情形,就返回型和不返回型,分别给出了16/9和13/7近似算法。     

On the Minimum Sum Coloring of P 4-Sparse Graphs

In this paper, we study the minimum sum coloring (MSC) problem on P ₄-sparse graphs. In the MSC problem, we aim to assign natural numbers to vertices of a graph such that adjacent vertices get different numbers, and the sum of the numbers assigned to the vertices is minimum. Based in the concept of maximal sequence associated with an optimal solution of the MSC problem of any graph, we show that there is a large sub-family of P ₄-sparse graphs for which the MSC problem can be solved in polynomial time. Moreover, we give a parameterized algorithm and a 2-approximation algorithm for the MSC problem on general P ₄-sparse graphs.     

Reoptimizing the 0-1 knapsack problem

In this paper we study the problem where an optimal solution of a knapsack problem on n items is known and a very small number k of new items arrive. The objective is to find an optimal solution of the knapsack problem with n+k items, given an optimal solution on the n items (reoptimization of the knapsack problem). We show that this problem, even in the case k=1, is NP-hard and that, in order to have effective heuristics, it is necessary to consider not only the items included in the previously optimal solution and the new items, but also the discarded items. Then, we design a general algorithm that makes use, for the solution of a subproblem, of an α-approximation algorithm known for the knapsack problem. We prove that this algorithm has a worst-case performance bound of , which is always greater than α, and therefore that this algorithm always outperforms the corresponding α-approximation algorithm applied from scratch on the n+k items. We show that this bound is tight when the classical Ext-Greedy algorithm and the algorithm are used to solve the subproblem. We also show that there exist classes of instances on which the running time of the reoptimization algorithm is smaller than the running time of an equivalent PTAS and FPTAS.     

Server allocation for zero buffer tandem queues

In this paper we consider the problem of allocating servers to maximize throughput for tandem queues with no buffers. We propose an allocation method that assigns servers to stations based on the mean service times and the current number of servers assigned to each station. A number of simulations are run on different configurations to refine and verify the algorithm. The algorithm is proposed for stations with exponentially distributed service times, but where the service rate at each station may be different. We also provide some initial thoughts on the impact on the proposed allocation method of including service time distributions with different coefficients of variation.     

An approximating polynomial algorithm for a sequence partitioning problem

We consider a strongly NP-hard problem of partitioning a finite sequence of vectors in Euclidean space into two clusters using the criterion of minimum sum-of-squares of distances from the elements of clusters to their centers. We assume that the cardinalities of the clusters are fixed. The center of one cluster has to be optimized and is defined as the average value over all vectors in this cluster. The center of the other cluster lies at the origin. The partition satisfies the condition: the difference of the indices of the next and previous vectors in the first cluster is bounded above and below by two given constants. We propose a 2-approximation polynomial algorithm to solve this problem.     

Batch sizing and job sequencing on a single machine

We study a single-machine scheduling problem in which the items to be processed have to be batched as well as sequenced. Since processed items become available in batches, flow times are defined to be the same for all items in the same batch. A constant set-up delay is incurred between consecutive batches. For any fixed, but arbitrary item sequence, we present an algorithm that finds a sequence of batches such that the total flow time of the items is minimized; we prove that for a set ofn items, the algorithm runs inO(n) time. We show that, among all sequences, the one leading to the minimum flow time has the items in non-decreasing order of running times. Thus, the optimal algorithm for the combined problem, called thebatch-sizing problem, runs inO(n logn) time. We also prove that this algorithm yields an improved solution to a scheduling problem recently studied by Baker [1].