Concerning the phakellin substructure of palau’amine

The phakellin (6) subunit of palau’amine (1) has been synthesized and found to be devoid of antibacterial activity, resolving the question of whether 1 is simply an elaborate phakellin in terms of its antimicrobial properties.     

Donnazoles A and B from Axinella donnani sponge: very close derivatives from the postulated intermediate ‘pre-axinellamine’

Two novel dimeric pyrrole-aminoimidazole (PAI) alkaloids (−) donnazoles A-B (1-2) were isolated from the marine sponge Axinella donnani collected off the Mauritius Island. Their structures were elucidated mainly by 2D NMR. Both compounds bear the crucial substituted cyclopentane of ‘pre-axinellamine’, the hypothetical common intermediate of all dimeric PAIs. Additionally, the essential trans-6,7 ring junction of palau′amine’s congeners is already established in 1 and 2. The absolute configurations of 1 and 2 were deduced via NOE correlations in combination with the comparison of their circular dichroism data with the one of (−) sceptrin. The absolute configuration of (−) donnazoles A (1) and B (2) is coherent with the absolute configuration of the known dimeric members of PAI alkaloids.     

‘Two-point’-bound supramolecular complexes from semi-rigidified dipyridine receptors and zinc porphyrins

Two linear compounds 1 and 2 have been designed and synthesized as new receptors for zinc porphyrins. Both compounds consist of two folded aromatic amide moieties, which are connected with an acetylene linker in 1 or directly in 2. The rigid conformations of their folded moieties are stabilized by intramolecular tri-centered hydrogen bonding, while the whole molecule adopts a ‘S’- or ‘C’-styled conformation depending on the relative orientation of the two rigid moieties. Two pyridine units are introduced at the ends of 1 and 2 for the complexation of zinc porphyrin guests. Although the ¹H NMR investigation indicated that both compounds can bind two zinc porphyrin guests at high concentrations (≥5 mM) in chloroform, the UV-vis studies revealed that, at low concentration of 1 and 2 (4 μM), both compounds complex one zinc porphyrin guest to form structurally unique ‘two-point’-bound 1:1 complexes. The association constants of the 1:1 complexes have been determined with the UV-vis titration experiments.     

Diastereomeric half-sandwich Ru(II) cationic complexes containing amino amide ligands. Synthesis, solution properties, crystal structure and catalytic activity in transfer hydrogenation of acetophenone

The cationic complexes [(η⁶-arene)Ru(N,O-amino amide)X]Y (arene = p-cymene or indane; N,O-amino amide = (l)-proline amide or (l)-phenylalanine amide; X = Cl or I; Y = Cl, I or PF₆) have been synthesised and fully characterized by spectroscopic and analytical methods. In several cases (1a, 3a, 4a, 4b, 5) the metal configuration has been definitively established by X-ray analysis on single crystal. The lability of the metal center in solution has been studied by ¹H NMR and CD techniques. The highest configurational stability has been found in the complexes of the type [(η⁶-indane)Ru(N,O-proline amide)Cl]Y (4a,b). The complexes 1b, 2a-b, 3b, 4b and 5 are good precatalysts for the transfer hydrogenation of acetophenone in basic i-PrOH, with ee up to 76% at 30 °C. An ESI(+)-MS study of pre-catalytic solutions has provided useful information on the catalytic mechanism.     

Synthesis of fluorhydrins by reaction of quinidine acetate, epiquinidine, and its acetate in superacid

In HF-SbF₅, with or without H₂O₂, a source of ‘OH⁺’ equivalent, quinidine 1a yields three ethers, the preferred conformation of the substrate favoring the observed cyclization. Under similar conditions, quinidine acetate 1b, epiquinidine 2a, and its acetate 2b give fluorhydrins with or without rearrangement in different amounts according to the nature of the substrate and the acidity. At low acidity, epiquinidine 2a yields selectively a sole nonrearranged fluorhydrin 10a. Quinidine acetate 1b, at high acidity, yields only rearranged fluorhydrins 8b and 9b.     

A convergent total synthesis of a new antiepileptic ceramide and its triacetyl derivative using olefin cross metathesis

A convergent total synthesis of a new antiepileptic ceramide 1b and its triacetyl derivative 1b′ was completed by using two important C-C bond forming reactions, Wittig methylenation and olefin cross metathesis as the key steps. The easily available 3,4,6-tri-O-benzyl-d-galactal was used as a chiral pool for the synthesis of highly functionalized amide 3 and the commercially available 1,12-dodecanediol for the long chain olefin counterpart 4. The long hydrocarbon chain of the new ceramide 1b was installed by using olefin cross metathesis between amide 3 and long chain terminal olefin 4 followed by hydrogenation.     

A logic gate-based fluorogenic probe for Hg detection and its applications in cellular imaging

A new colorimetric and fluorogenic probe (RN₃) based on rhodamine-B has been successfully designed and synthesized. It displays a selective response to Hg²⁺ in the aqueous buffer solution over the other competing metals. Upon addition of Hg²⁺, the solution of RN₃ exhibits a ‘naked eye’ observable color change from colorless to red and an intensive fluorescence with about 105-fold enhancement. The changes in the color and fluorescence are ascribed to the ring-opening of spirolactam in rhodamine fluorophore, which is induced by a binding of the constructed receptor to Hg²⁺ with the association and dissociation constants of 0.22 × 10⁵ M⁻¹ and 25.2 μM, respectively. The Job's plot experiment determines a 1:1 binding stoichiometry between RN₃ and Hg²⁺. The resultant “turn-on” fluorescence in buffer solution, allows the application of a method to determine Hg²⁺ levels in the range of 4.0–15.0 μM, with the limit of detection (LOD) calculated at 60.7 nM (3σ/slope). In addition, the fluorescence ‘turn-off’ and color ‘fading-out’ happen to the mixture of RN₃-Hg²⁺ by further addition of I⁻ or S²⁻. The reversible switching cycles of fluorescence intensity upon alternate additions of Hg²⁺ and S²⁻ demonstrate that RN₃ can perform as an INHIBIT logic gate. Furthermore, the potential of RN₃ as a fluorescent probe has been demonstrated for cellular imaging.     

The first stereoselective total synthesis of antiviral antibiotic, xanthocillin X dimethylether and its stereoisomer

Xanthocillin X dimethylether (1) has been stereoselectively synthesized from the propiolic acid 6 through an oxidative rearrangement of the stannyl vinyl amide 27 to give the vinyl isocyanate 30 and a homocoupling of the stannyl N-formylenamine 31.     

Synthesis of the anionic fluororeceptors based on thiourea and amide groups and recognition property for α,ω-dicarboxylate

Three new neutral receptors (1, 2 and 3) containing thiourea and amide groups were synthesized by simple steps in good yields. The binding properties for anions of 1, 2 and 3 were examined by UV-vis, fluorescence, and ¹H NMR spectroscopy. Receptors 1, 2 and 3 all had a better adipate anion selectivity by comparison with other dicarboxylate anions. The association constants of 1, 2 and 3 with adipate were higher as compared to other anions (malonate, succinate, glutarate). In particular, a distinct color change was observed from light yellow to orange-red upon addition of adipate to the solution of 1 in DMSO. The UV-vis and fluorescence data indicate that a 1:1 stoichiometry complex is formed between compound 1, 2 or 3 and dicarboxylate anions through hydrogen bonding interactions.     

Penicillones A and B, two novel polyketides with tricyclo [5.3.1.0] undecane skeleton, from a marine-derived fungus Penicillium terrestre

Two novel polyketides, penicillones A (1) and B (2), with tricyclo [5.3.1.0^3,8] undecane skeleton, were isolated from Penicillium terrestre. Their structures and relative stereochemistries were determined on the basis of spectroscopic methods. The absolute configuration of 2 was established by the modified Mosher’s method, while that of 1 was deduced from the similar CD absorptions of 1 and 2. Compound 1 showed weak cytotoxicities against P338 and A-549 cell lines, while 2 was inactive against P388.     

Aromaticity of anthranil and its isomers, 1,2-benzisoxazole and benzoxazole

Direct computation of the π-current density, that is, the ‘ring current’, of anthranil (1) and its isomers 1,2-benzisoxazole (2) and benzoxazole (3) reveals different patterns of current flow: isomers 2 and 3 sustain strong benzene-like currents in the six-membered and bifurcated flow in the five-membered ring, whereas, in keeping with its lower thermodynamic stability, 1 has only a perimeter circulation without separate monocycle currents. Although the ring current criterion does not offer a sharp distinction between 2 and 3, their difference in thermodynamic stability is identical to that between isoxazole (4) and oxazole (5) suggesting an aromaticity order 1 < 2 ≈ 3.     

Regioselectivity in the 1,3-dipolar cycloaddition of adamantylidenefulvene and its modification by inclusion in cyclodextrins' solutions

The 1,3-dipolar cycloaddition of adamantylidenefulvene (1) with 2 equiv of nitrile oxides 2a-d gave 1/1 cycloadducts, 3a-d and 4a-d, as the major products, and four other 1/2 minor cycloadducts 5-8a,b. The ratios of 1/1 cycloadducts 3a-d to 4a-d in THF solution were about 1/1 in the four different nitrile oxides 2a-d studied and microwave was found to accelerate the reactions and enhance their yields. It is noteworthy that the regioselectivity of 3a/4a was enhanced to 71/29 in β-cyclodextrin (β-CD) aqueous solution compared to that of 40/60 in the absence of β-CD. The regioselectivity of 3b/4b was further enhanced to 99/1 when 4-tert-butylphenyl hydroximinoyl chloride (9b) was complexed with β-CD and then proceeded to react with 1; this is in sharp contrast with that of 33/67 in the absence of β-CD. The binding constant of 1·β-CD in acetone-d₆/D₂O (1/1) was determined to be 188±9 M⁻¹ by ¹H NMR titration experiments. The binding mode of 1·β-CD was further determined by ROESY experiment. Furthermore, molecular dynamic simulations were carried out to provide information of the complexation modes of 1·β-CD, 3a·β-CD, 4a·β-CD, 9a·β-CD, and 9b·β-CD. It was found that both steric and electrostatic effects play important roles in determining the regio- and stereochemistry of 1,3-dipolar cycloaddition of 1. Finally, β-CD is shown to serve as a chiral shift reagent to differentiate the enantiomers of 4a in ¹H NMR.     

Novel phthalocyanines bearing four 4-phenyloxyacetic acid functionalities

Metal-free (2) and Co(II), Zn(II), Ni(II), Cu(II) metallophthalocyanines (2a–d) with four 4-phenyloxyacetic acid groups on the periphery were prepared by cyclotetramerization of new p-(3,4-dicyanophenoxy)phenylacetic acid (1) and the corresponding divalent metal salts. Further reactions of these products with thionylchloride and then benzylamine in tetrahydrofuran, and octanol in pyridine gave amide (3, 3a–d) and ester (4, 4a–d) derivatives, respectively. The new compounds have been characterized by elemental analyses, IR, UV–Vis, mass and ¹H NMR spectroscopy. The redox properties of compounds 2 and 2a–d were identified by cyclic voltammetry.     

Synthesis, characterization and ion transportation studies of some novel cyclophane amides

Various novel cyclophane amides with a large cavity have been synthesized. The structures of cyclophane amides 14 and 15 were resolved using XRD studies. Cyclophane amide 28 shows a shift in λ_max in the UV/Vis. spectra when treated with Cu (II) ion as well as with Pb (II) ion. Ion transportation studies were carried out with cyclophane amide 14 which proved that the Na⁺ ion passes through the cavity while K⁺ ions are retained.     

The dimerization and photochemical rearrangement of pentacyclo-[5.4.0.0.0.0]undecane-8-thione

Pentacyclo[5.4.0.0^2,6.0^3,10.0^5,9]undecan-8-one 1 is readily sulfurated into pentacyclo[5.4.0.0^2,6.0^3,10.0^5,9]undecane-8-thione 2 with Lawesson’s reagent in dry THF. Upon standing at ambient temperature the thione 2 formed the corresponding thio-dimer 3 within 10 days. When the thio-dimer 3 was exposed to oxygen and ultraviolet light an unexpected photochemical oxidation and rearrangement took place to form the stable disulfenate 5.     

Platinum-catalyzed double silylations of alkynes with bis(dichlorosilyl)methanes

Bis(dichlorosilyl)methanes 1 undergo the two kind reactions of a double hydrosilylation and a dehydrogenative double silylation with alkynes 2 such as acetylene and activated phenyl-substituted acetylenes in the presence of Speier’s catalyst to give 1,1,3,3-tetrachloro-1,3-disilacyclopentanes 3 and 1,1,3,3-tetrachloro-1,3-disilacyclopent-4-enes 4 as cyclic products, respectively, depending upon the molecular structures of both bis(dichlorosilyl)methanes (1) and alkynes (2). Simple bis(dichlorosilyl)methane (1a) reacted with alkynes [R¹-CC-R²: R¹ = H, R² = H (2a), Ph (2b); R¹ = R² = Ph (2c)] at 80 °C to afford 1,1,3,3-tetrachloro-1,3-disilacyclopentanes 3 as the double hydrosilylation products in fair to good yields (33-84%). Among these reactions, the reaction with 2c gave a trans-4,5-diphenyl-1,1,3,3-tetrachloro-1,3-disilacyclopentane 3ac in the highest yield (84%). When a variety of bis(dichlorosilyl)(silyl)methanes [(Me_nCl_3 − nSi)CH(SiHCl₂)₂: n = 0 (1b), 1 (1c), 2 (1d), 3 (1e)] were applied in the reaction with alkyne (2c) under the same reaction conditions. The double hydrosilylation products, 2-silyl-1,1,3,3-tetrachloro-1,3-disilacyclopentanes (3), were obtained in fair to excellent yields (38-98%). The yields of compound 3 deceased as follows: n = 1 > 2 > 3 > 0. The reaction of alkynes (2a-c) with 1c under the same conditions gave one of two type products of 1,1,3,3-tetrachloro-1,3-disilacyclopentanes 3 and 1,1,3,3-tetrachloro-1,3-disilacyclopent-4-enes (4): simple alkyne 2a and terminal 2b gave the latter products 4ca and 4cb in 91% and 57% yields, respectively, while internal alkyne 2c afforded the former cyclic products 3cc with trans form between two phenyl groups at the 3- and 4-carbon atoms in 98% yield, respectively. Among platinum compounds such as Speier’s catalyst, PtCl₂(PEt₃)₂, Pt(PPh₃)₂(C₂H₄), Pt(PPh₃)₄, Pt[ViMeSiO]₄, and Pt/C, Speier’s catalyst was the best catalyst for such silylation reactions.     

Derivation of saddle shaped cyclooctatetrathiophene: increasing conjugation and fabricating pentamer

With cyclooctatetrathiophene (COTh) as building block, two α,α,α,α-tetraaryl COThs, COThP and COThTh have been efficiently synthesized. Phenyl and thienyl were employed as end-capping groups to introduce to COTh and increase its conjugation. For enlarging the special ‘saddle’ shaped structure, a pentamer of COTh was synthesized via Negishi reaction and CuCl₂-promoted oxidative coupling reaction. The pentamer (COThF) is a new type of dendrimer with COTh as dendron, which presents an artistic configuration possessing a large saddle shape. All compounds were fully characterized by ¹H NMR, ¹³C NMR, HRMS and IR. The crystal structures of COThP and COThTh were confirmed by X-ray analysis. The molecular configuration of COThF was optimized by theoretical calculations. Their UV–vis properties, electrochemical behaviours and thermo-gravimetric analysis of COThP, COThTh and COThF were also described.     

Synthesis and structural characterisation of redox-responsive N-ferrocenoyl amino acid esters; the X-ray crystal structure of N-ferrocenoyl alanine methyl ester; electrochemical anion recognition and H NMR complexation studies

The N-ferrocenoyl amino acid ester derivatives FcCOR {Fc=(η⁵-C₅H₅)Fe(η⁵-C₅H₄)} where R=Gly(OMe) 1, Gly(OEt) 2, Gly(OBn) 3, l-Ala(OMe) 4, l-Ala(OEt) 5, l-Leu(OMe) 6, l-Leu(OEt) 7, l-Leu(OBn) 8, l-Phe(OMe) 9 and l-Phe(OEt) 10, were prepared by coupling ferrocene carboxylic acid with the appropriate amino acid ester starting materials using the 1,3-dicyclohexylcarbodiimide (DCC), 1-hydroxybenzotriazole (HOBt) protocol and these have been characterised by spectroscopic techniques. The electrochemical anion sensing behaviour of compounds 1-10 with several anions using a platinum microdisk working electrode is described, together with ¹H NMR anion complexation studies. The X-ray single crystal structure of N-ferrocenoyl-l-alanine methyl ester 4 has been determined and contains two molecules which differ slightly in conformation in the asymmetric unit of space group P2₁ (No. 4); principal dimensions are amide N(H)CO 1.224(6) and 1.231(6) Å, ester CO 1.220(10) and 1.190(7) Å, with N-H?OC(amide) as the primary intermolecular hydrogen bond, N?O 2.992(6) and 2.971(6) Å and with graph set C(4).     

Structure and reactions of photothebainehydroquinone

The structure of photothebainehydroquinone, which was obtained by unsensitized irradiation with UV light of thebainequinone (1) or thebainehydroquinone (2) has been shown by X-ray crystallography to be 3a, which arises from 2 through a di-π-methane to vinylcyclopropane rearrangement. Treatment of 3a with acid gave 5a, 6a, 5b and probably 6b. Studies using DCl showed that the opening of the cyclopropane in 3a to give 5a, 5b, and 6a involved ‘end-on’ approach of the D⁺. The mechanisms of the reactions are discussed.     

A convenient synthesis of pyridine and 2,2′-bipyridine derivatives

α-Chloro-α-acetoxy-β-keto-esters 9 were readily prepared from β-keto-esters 6 in good overall yields. These compounds reacted as α,β-diketo-ester equivalents 2 with amidrazones 1 yielding triazines 3, generally in good yields. Picolinates 10 provided an alternative source of α,β-diketo-ester equivalents 2 when treated with copper(II) acetate. A ‘one-pot’ reaction of the α,β-diketo-ester equivalents 2 with amidrazones 1 in the presence of 2,5-norbornadiene 5 in boiling ethanol yielded the pyridines 4 and 2,2′-bipyridines 4 (R¹=2-pyridyl) directly without the need to isolate the corresponding triazines 3. Triazine 3c reacted with the aza-dienophiles 13 and 17 affording the products 16 and 18, respectively, in good yields.