Collision-induced dissociation of the lower alcohols. A thermochemical study

Collision-induced dissociation of the molecular ions and of some of the fragment ions foremed on ionization of methanol, ethanol and n-propnol have been studied at high energy resolution in a mass spectrometer. The translational energy lost upon collision and the kinetic energy releasedupon fragmentation of the collisionally excited species have been measured by the methods of ion kinetic energy spectromety. The results of the translational energy loss measurements compare well with excitation energies predicted for each reaction form breakdown curves showing the relative abundances of the ionsas a fuction of internal energy. This correspondence is evidebce that the ionic reactions following electron-impact excitation and those following collisional excitation with neutral molecules at relative traslational energies in the range of several kilovolts are at least qualitatively independent of the method of excitation. The occurrence of the corresponding spontaneous fragmentations in the alcohols has also been studied and the kinetic energy releases accompanying these reactions have been determined. In a few cases, metastable peaks were observed which did not increase in intensity when collision gas added and this phenomenon is associated with particular features of the reaction thermochemistry. Reactions which generally occur to very small extents in mass spectromety, such as methylene elimination, have been observed in highly excited ions. The methods developed in this study allow the decription of the thermochemistry of the reaction of highly excited ions, indlcuding the experimental determination of the partitioning of the nonfixed energy of the activated complex. This procedure complemets and extends energy partitioning studies made on metastable ions in which the partitioning of the reverse activation energy is the more readily accessible.     

Intramolecular aromatic substitution reactions in substituted N,N-dimethylthiobenzamide ions

The molecular ions of N,N-dimethylthiobenzamide and its ortho substituted derivatives (substituents CH₃, Cl, Br, I) lose a hydrogen atom and/or the ortho substituent. The mechanism of this process has been studied by measurements of the ionization energies, appearance energies of the product ions m/z 164 and the kinetic energy release during this process. The structure of the product ions m/z 164 and relevant reference ions have been investigated by mass analysed ion kinetic energy spectra, B/E linked scan spectra and collision induced decompositions. The results show clearly the formation of two different kinds of product ions m/z 164 depending on the substituent lost. Type a ions are formed by loss of a H atom or the CH₃ substituent and correspond to protonated 3,4-benzo-N-methylpyroline-2-thione. The formation of these ions occurs by a hydrogen rearrangement followed by an intramolecular substitution via a 5-membered cyclic intermediate and is associated with a large release of kinetic energy. In contrast, the loss of the halogeno substituents to give type b ions probably occurs via a direct displacement reaction by the sulfur atom of the thioamide group giving rise to Gaussian shaped peaks mass analysed ion kinetic energy spectra.     

Is collision-induced dissociation of low-energy carbonyl sulfide cations adversely affected by asymmetry?

We have measured relative abundances of fragment ions resulting from collision-induced dissociation of OCS(+) ions in collision with xenon neutrals as a function of ion kinetic energy and scattering angle. The lowest energy dissociation product, S(+), dominates at all energies up to 53 eV kinetic energy studied here. Surprisingly, the second most abundant dissociation channel is CS(+) and not CO(+) even though the thermochemical threshold for CO(+) is lower than that for CS(+) and CO(+) is more abundant than CS(+) in the normal mass spectrum of OCS. We do not observe any significant abundance of CO(+) in this energy range, suggesting that collision-induced excitation and dissociation of OCS(+) is significantly different to that of symmetric triatomic ions. A possible role of asymmetry in the molecular ion's collisional activation via neutral collision is suggested for the different behavior.     

Dissociative scattering of hyperthermal energy CF3+ ions from modified surfaces

Dissociative scattering of CF3+ ions in collision with a self-assembled monolayer surface of fluorinated alkyl thiol on a gold 111 crystal has been studied at low ion kinetic energies (from 29 to 159 eV) using a custom built tandem mass spectrometer with a rotatable second stage energy analyzer and mass spectrometer detectors. Energy and intensity distributions of the scattered fragment ions were measured as a function of the fragment ion mass and scattering angle. Inelastically scattered CF3+ ions were not observed even at the lowest energy studied here. All fragment ions, CF2+, CF+, F+, and C+, were observed at all energies studied with the relative intensity of the highest energy pathway, C+, increasing and that of the lowest energy pathway, CF2+, decreasing with collision energy. Also, the dissociation efficiency of CF3+ decreased significantly as the collision energy was increased to 159 eV. Energy distributions of all fragment ions from the alkyl thiol surface showed two distinct components, one corresponding to the loss of nearly all of the kinetic energy and scattered over a broad angular range while the other corresponding to smaller kinetic energy losses and scattered closer to the surface parallel. The latter process is due to delayed dissociation of collisionally excited ions after they have passed the collision region as excited parent ions. A similar study performed at 74 eV using a LiF coated surface on a titanium substrate resulted only in one process for all fragment ions; corresponding to the delayed dissociation process. The intensity maxima for these fragmentation processes were shifted farther away from the surface parallel compared to the thiol surface. A new mechanism is proposed for the delayed dissociation process as proceeding via projectile ions' neutralization to long-lived highly excited Rydberg state(s), reionization by the potential field between the collision region and entrance to the energy analyzer, and subsequent dissociation several microseconds after collisional excitation. A kinematic analysis of experimental data plotted as velocity Newton diagrams demonstrates that the delayed dissociation process results from the collisions of the ion with the bulk surface; i.e., the self-assembled monolayer surface acts as a bulk surface. A similar analysis for the highly inelastic collision processes shows that these are due to stronger collisions with a fraction of the thiol molecular chain, varying in length (mass) with the ion energy.     

The mechanism of proton exchange: guided ion beam studies of the reactions, H(H2O)n+ (n=1-4)+D2O and D(D2O)n+ (n=1-4)+H2O

Reactions of protonated water clusters, H(H(2)O)(n) (+) (n=1-4) with D(2)O and their "mirror" reactions, D(D(2)O)(n) (+) (n=1-4) with H(2)O, are studied using guided-ion beam mass spectrometry. Absolute reaction cross sections are determined as a function of collision energy from thermal energy to over 10 eV. At low collision energies, we observe reactions in which H(2)O and D(2)O molecules are interchanged and reactions where H-D exchange has occurred. As the collision energy is increased, the H-D exchange products decrease and the water exchange products become dominant. At high collision energies, processes in which one or more water molecules are lost from the reactant ions become important, with simple collision-induced dissociation processes, i.e., those without H-D exchange, being dominant. Threshold energies of endothermic channels are measured and used to determine binding energies of the proton bound complexes, which are consistent with those determined by thermal equilibrium measurements and previous collision-induced dissociation studies. A kinetic scheme that relies only on the ratio of isomerization and dissociation rate constants successfully accounts for the kinetic energy dependence observed in the branching ratios for H-D and water exchange products in all systems. Rice-Ramsperger-Kassel-Marcus theory and ab initio calculations confirm the feasibility and establish the details of this kinetic model.     

Collision Energetics in a Tandem Time-of-Flight (TOF/TOF) Mass Spectrometer with a Curved-Field Reflectron

Collisions of fullerene ions (C(60) (+)) with helium and neon were carried out over a range of laboratory energies (3-20 keV) on a unique tandem time-of-flight (TOF/TOF) mass spectrometer equipped with a curved-field reflectron (CFR). The CFR enables focusing of product ions over a wide kinetic energy range. Thus, ions extracted from a laser desorption/ionization (LDI) source are not decelerated prior to collision, and collision energies in the laboratory frame are determined by the source extraction voltages. Comparison of product ion mass spectra obtained following collisions with inert gases show a time (and apparent mass) shift for product ions relative to those observed in spectra obtained by metastable dissociation (unimolecular decay), consistent with impulse collision models, in which interactions of helium with fullerene in the high energy range are primarily with a single carbon atom. In addition, within a narrow range of kinetic energies an additional peak corresponding to the capture of helium is observed for fragment ions C(50) (+), C(52) (+), C(54) (+), C(56) (+) and C(58) (+).     

Kinetic energy release in ionic fragmentations: Use as an ion structure probe

The kinetic energy released in unimolecular reactions, as measured from the width of the corresponding metastable peak, shows only a small dependence on such parameters as source temperature, ion-source residence time and ion acceleration voltage. Similarly, fragmenting ions generated from different members of an homologous series of molecular ions have been found to release the same kinetic energy and hence do not exhibit a degrees-of-freedom effect analogous to that for metastable abundances. In general, molecular ions formed by electron-impact have been found to release slightly less kinetic energy on fragmentation than the corresponding ions formed via a fragmentation sequence. These observations suggest that kinetic energy release is a useful method of structural characterization of metastable ions; while increase in the average internal energies of the ions sample lead to larger energy releases, this effect is usually small. The use of a very narrow energy resolving (β) slit and a procedure in which the metastable peak width is extrapolated to zero slit width has been found to improve the accuracy of measurement of the kinetic energy release, particularly when the metastable and main beam peak widths are of comparable magnitude.     

Isomerization and fragmentation of methyl benzofuran ions and chromene ions in the gas phase

The rearrangement of the molecular ions of the isomeric 2- and 3-methyl benzofurans (1 and 2), 2H-chromene (3) and 4H-chromene (4) has been studied as a further example of the isomerization of oxygen-heteroaromatic radical cations via a ring expansion/ring contraction mechanism well documented for molecular ions of alkyl benzenes. The ions 1⁺˙?4⁺˙ fragment mainly by H loss into identical chromylium ions a. The process exhibits consistently a large kinetic energy release and an isotope effect k_H/k_D, which arise from a rate-determining energy barrier of the last dissociation step. Differences of the kinetic energy releases, the isotope effects and the appearance energies of the methyl benzofuran ions and the chromene ions indicate a large energy barrier also for the initial hydrogen migration during the rearrangement of the methyl benzofuran ions. This is substantiated by an MNDO calculation of the minimum energy reaction path. In contrast to the behaviour of alkyl benzene ions, a unidirectional isomerization of the methyl benzofuran ions by ring expansion takes place but no mutual interconversion of the molecular ions of methyl benzofurans and chromenes.     

The gas phase structure of some protonated and ethylated aromatic amines

The fundamental processes of protonation and ethylation, occurring in a methane chemical ionization source, have been investigated for a variety of aromatic amines. The positions of protonation and ethylation on the substrate amines were determined by generating isomeric ions either by protonation of neutral ethyl substituted amines or by ethylation of the amines themselves. The product ions were investigated for structural differences via collision induced dissociation and subsequent analysis via mass analysed ion kinetic energy spectrometry. Similarities and differences between mass analysed ion kinetic energy/collision induced dissociation spectra of these isomeric ions were used to determine protonation and ethylation sites for imidazole, benzimidazole, indazole, pyrrole, pyridine and aniline.     

Investigating ion-surface collisions with a niobium superconducting tunnel junction detector in a time-of-flight mass spectrometer

The performance of an energy sensitive, niobium superconducting tunnel junction (STJ) detector is investigated by measuring the pulse height produced by impacting molecular and atomic ions at different kinetic energies. Ions are produced by laser desorption and matrix-assisted laser desorption in a time-of-flight mass spectrometer. Our results show that the STJ detector pulse height decreases for increasing molecular ion mass, passes through a minimum at around 2000 Da, and then increases with increasing mass of molecular ions above 2000 Da. The detector does not show a decline in sensitivity for high mass ions as is observed with microchannel plate ion detectors. These detector plus height measurements are discussed in terms of several physical mechanisms involved in an ion-surface collision.     

Sulphonylium ions in the gas phase

Electron impact mass spectrometry was used to investigate the fragmentation of a series of arenesulphonyl chlorides. Sequential losses of a chlorine atom and sulphur dioxide from the molecular ions occurred and the reverse of these reactions had small critical energies that were generally unaffected by the ring substituent. However, an interesting intramolecular cyclization reaction occurring on the ortho-nitro derivative is discussed with the aid of kinetic energy release measurements on this derivative and on a model compound. Appearance energy measure ments combined with multiple scattering Xα calculations led to an estimate of the sulphur-chlorine bond strength in benzenesulphonyl chloride.     

On the use of scans at a constant ratio of B/E for studying decompositions of peptide metal(II)-ion complexes formed by electrospray ionization

The use of sector mass spectrometers to study metastable ion decompositions of peptide metal-ion complexes formed by electrospray ionization is discussed. Products that are formed by charge-separation reactions are characterized by large kinetic energy release distributions. This causes scans at a constant B/E to give incorrect product ion abundances and possibly incorrect mass assignments. Two instrumental methods exist that can be used either to detect the ions or to estimate relative ion abundances: a floated collision cell or mass-analyzed ion kinetic energy spectrometry (MIKES) scans. The floated collision cell, by virtue of an altered B/E scan law, however, discriminates against important metastable ion reactions that occur outside the cell. MIKES scans provide a clearer estimate of product ions that arise by metastable ion charge-separation reactions. Problems with pseudotandem (first field-free region) experiments are also discussed.     

Energy deposition in iron pentacarbonyl ions undergoing surface-induced dissociation in a Fourier transform mass spectrometer

Internal energy deposition into iron pentacarbonyl positive ions undergoing surface-induced dissociation (SID) in a Fourier transform mass spectrometer is estimated from the abundances and known critical energies of the product fragment ions. A narrow energy distribution, comparable to that reported in earlier BQ and tandem quadrupole SID studies of the same compound, is observed. As judged by the ratio of fragment ions to incident parent ions observed, SID of iron pentacarbonyl in the 3 T Fourier transform mass spectrometer is more efficient, but results in lower conversion of laboratory to internal energy. This may be a result of the more shallow collision incidence angle employed in the Fourier transform mass spectrometer measurements (a few degrees), which contrasts with the 32–60° collision angles used in the earlier BQ and tandem quadrupole mass spectrometry studies. Collision-induced dissociation with He under single collision conditions is also reported, Not unexpectedly, conversion of kinetic to internal energy was lower than found in a previous Fourier transform mass spectrometer study of the iron pentacarbonyl cation employing argon as collision gas under multiple collision conditions.     

Hydride transfer reaction dynamics of OD+ +C3H6

The hydride transfer reaction between OD+ and C3H6 has been studied experimentally and theoretically over the center of mass collision energy range from 0.21 to 0.92 eV using the crossed beam technique and density functional theory calculations. The center of mass flux distributions of the product ions at three different energies are highly asymmetric, with maxima close to the velocity and direction of the precursor propylene beam, characteristic of direct reactions. In the hydride transfer process, the entire reaction exothermicity is transformed into product internal excitation, consistent with mixed energy release in which the hydride ion is transferred with both the breaking and forming bonds extended. At higher collision energies, at least 85% of the incremental translational energy appears in product translation, providing a clear example of induced repulsive energy release. Compared to the related reaction of OD+ with C2H4, reaction along the pathway initiated by addition of OD+ to the C=C bond in propylene has a critical bottleneck caused by the torsional motion of the methyl substituent on the double bond. This bottleneck suppresses reaction through an intermediate complex in favor of direct hydride abstraction. Hydride abstraction appears to be a sequential process initiated by electron transfer in the triplet manifold, followed by rapid intersystem crossing and subsequent hydrogen atom transfer to form ground state allyl cation and HOD.     

Collision induced dissociations of radical cations

The collision induced dissociation spectra of ions generated by ionization or fragmentation of various samples reveal at least five non-decomposing structures. In contrast, the kinetic energy release measurements for the loss of carbon monoxide from the metastable ions are in agreement with the occurrence of a common reactive species. Isomerization into an ‘α,β-unsaturated aldehyde-like’ structure prior to fragmentation is proposed to accommodate these collision induced dissociation and mass analysed ion kinetic energy data. Some resuts suggest also that carbon monoxide loss from the phenol molecular ion may not occur via the cyclohexadienone tautomer.     

Collision energy transfer in collision of NH(4) (+)(NH(3))(n-1) (n=3-9) with ND(3)

An incorporation of ND(3) into protonated ammonia cluster ions NH(4)(+)(NH(3))(n-1) (n=3-9), together with a dissociation of the cluster ions, was observed in the collision of the cluster with ND(3) at collision energies ranging from 0.04 to 1.4 eV in the center-of-mass frame. The branching fractions of the cluster ion species produced in the reactions were obtained as a function of the collision energy. The branching fractions of the incorporation products were successfully explained in terms of the Rice-Ramsperger-Kassel (RRK) theory at collision energies lower than the binding energy of the cluster ion. In addition, the internal energy distributions of the parent cluster ions were determined, and found to be in good agreement with those predicted using the evaporative ensemble model. In incorporations at collision energies lower than the binding energy of the cluster ion, all of the collision energy was transferred to the internal energy of the cluster ions; subsequently, an evaporation of ammonia molecules occurred in an equilibrium process after a complete energy redistribution in the clusters. In contrast, at collision energies higher than the binding energy of the cluster ion, a release of an ammonia molecule from the incorporation products occurred in a nonequilibrium process. The transition from the complex mode to the direct mode in the incorporation was observed at collision energies approximately equal to the binding energy. On the other hand, the collision energy dependence of the cross sections for the dissociation and for a nonreactive collision were estimated by a RRK simulation in which the collision energy transfer was interpreted by using the classical hard-sphere collision model. A relationship between reactivity and reaction modes in the collision of NH(4)(+)(NH(3))(4) with ND(3) is discussed via a comparison of the experimental results with the RRK simulation.     

Applications of collision dynamics in quadrupole mass spectrometry

Some applications of collision dynamics in the field of quadrupole mass spectrometry are presented. Previous data on the collision induced dissociation of ions in triple quadrupole mass spectrometers is reviewed. A new method to calculate the internal energy distribution of activated ions directly from the increase in the cross section for dissociation with center of mass energy is presented. This method, although approximate, demonstrates explicitly the high efficiency of transfer of translational to internal energy of organic ions. It is argued that at eV center of mass energies, collisions between protein ions and neutrals such as Ar are expected to be highly inelastic. The discovery and application of collisional cooling in radio frequency quadrupoles is reviewed. Some previously unpresented data on fragment ion energies in triple quadrupole tandem mass spectrometry are shown that demonstrate directly the loss of kinetic energy of fragment ions in the cooling process. The development of the energy loss method to measure collision cross sections of protein ions in triple quadrupole instruments is reviewed along with a new discussion of the effects of inelastic collisions in these experiments and related ion mobility experiments.     

Delayed dissociation spectra of survivor ions from high-energy collisional activation

Collisional activation (CA) of large ions at kiloelectronvolt energies is accompanied by unexpectedly large losses of translational energy, which vary with the nature of the collision gas. Previous investigations have concentrated upon subsequent fragmentations occurring within a time window covering a few fis immediately following collision, using massanalyzed ion kinetic energy spectrometry. In the present work, survivor ions were selected for specified values of translational energy loss, and their internal energy contents assessed via their subsequent unimolecular fragmentation reactions within a later time window. Beam collimation was also applied when circumstances permitted to impose angular selection, thus minimizing cross talk between effects of collisional scattering and energy dispersion. It was shown that internal excitation of the reactant ion can account for only a small fraction of the observed loss of translational energy. The recoil energy of the target is thus the principal sink for the translational energy loss, since the latter was always chosen to be less than the lowest excitation energy of the target. This conclusion is shown to be consistent with theoretical models of the CA process. The practical implications of these conclusions for CA of large ions at kiloelectronvolt energies are discussed.     

Translational energy release and stereochemistry of steroids. 14. Epimeric dihydroxy steroids of the androstane series

The stereochemistry of dihydroxy steroids, both the mode of the A/B ring junctions and the configuration of OH groups, may be determined from translational energy (T50%) measurements for the loss of a CH.3 radical, from the ratios of metastable-ion peak heights to those of the main beam (determined for the dehydration reactions), and by comparing unimolecular and collision-induced, mass-analysed ion kinetic energy spectra of the new main beam of [M-H2O]+ ions (i.e. those formed via dehydration of metastable molecular ions of epimeric hydroxy steroids in the first field-free region of a double-focusing mass spectrometer.     

On the formation and decomposition of the [M ? HNO]+ ion from o-nitrobenzaldoxime

The molecular ion of o-nitrobenzaldoxime appears to eliminate a molecule of HNO, the latter as shown by deuterium labelling containing the hydroxyl hydrogen atom. This reaction may be followed either by loss of CO2 or C2O2 (2 × CO), which requires complicated skeletal rearrangements. To determine the structure of the [M ? HNO]+ ion, the kinetic energies, released in the loss of CO2 and of C2O2 from this ion, have been measured. Similar measurements have been made on the appropriate metastable ions from o-nitrosobenzaldehyde, 2,1-benzisoxazoline-3-one, 2-benzoxazolinone and 3-hydroxy-1,2-benzisoxazole, whose molecular ions have the same elemental composition as the [M ? HNO]+ ion from o-nitrobenzaldoxime. In the loss of HNO from the molecular ions of o-nitrobenzaldoxime o-nitrosobenzaldehyde molecular ions are generated first, which then, at least upon decomposition, rearrange further to 2,1-benzisoxazoline-3-one molecular ions. Part of the latter finally rearrange to 2-benzoxazolinone molecular ions, which eliminate CO via two routes. One of these corresponds to a low energy process and the other to a higher energy path whose excess energy induces the subsequent rapid loss of a second CO molecule. The observed effect of the rate-determining isomerizations of the molecular ions of o-nitrobenzaldoxime, o-nitrosobenzaldehyde, 2,1-benzisoxazoline-3-one and 3-hydroxy-1,2-benzisoxazole to 2-benzoxazolinone on the intensity and shape of the metastable peak for the low energy process for CO expulsion from the molecular ions of 2-benzoxazolinone supports the proposed rearrangements.