Pressure tuning between NH...N hydrogen-bonded ice analogue and NH...Br polar dabcoHBr complexes

At normal conditions 1,4-diazabicyclo[2.2.2]octane hydrobromide [C(6)H(13)N(2)](+.)Br(-) forms centrosymmetric crystals, space group Pm2, NH(+)...N hydrogen-bonded linear polycationic chains with disordered protons in the structure. As in H(2)O ice Ih, the protons in [C(6)H(13)N(2)](+.)Br(-) crystals remain disordered at low temperatures. Above 0.4 GPa the [C(6)H(13)N(2)](+.)Br(-) crystals transform into a new polar NH(+)...Br(-) hydrogen bonded complex, space group Cmc2. It has been crystallized in-situ in a diamond anvil cell and its structure determined by X-rays. The low-pressure triggering of this transformation indicates that it is a possible source of defects in the real structure at normal conditions, where, along with disproportionation defects, they can be responsible for anomalous dielectric properties, including relaxor-like behavior of NH...N hydrogen-bonded compounds.     

Base-pair interactions in the gas-phase proton-bonded complexes of C+G and C+GC

Interactions involved in the formation of gas-phase proton-bonded molecular complexes of cytosine (C) and guanine (G) were theoretically investigated for the case of C(+)G and C(+)GC using B3LYP density functional theory. In this study, particular focus was on the dimeric interaction of proton-bonded C(+)G, where a proton bond and a hydrogen bond are cooperatively involved. The dimer interaction energy in terms of dissociation energy (D(e)) was predicted to be 41.8 kcal/mol. The lowest (frozen) energy structure for the C(+)G dimeric complex was found to be CH(+)...G rather than C...H(+)G in spite of the lower proton affinity of the cytosine moiety, which was more stable by 3.3 kcal/mol. The predicted harmonic vibrational frequencies and bond lengths suggest that the combined contributions of proton and hydrogen bonding may determine the resultant stability of each complex structure. In contrast to the dimer case, in the case of the isolated C(+)GC triplet, the two minimum energy structures of CH(+)...GC and C...H(+)GC were predicted to be almost equivalent in total energy. The dissociation energy (D(e)) for the C(+)G pairing in the C(+)GC triplet was 43.7 kcal/mol. Other energetics are also reported. As for the proton-transfer reaction in the proton-bond axis, the forward proton-transfer barriers for the dimer and trimer complexes were also predicted to be very low, 3.6 and 1.5 kcal/mol (DeltaE(e)(PT)), respectively.     

Moving protons with pendant amines: proton mobility in a nickel catalyst for oxidation of hydrogen

Proton transport is ubiquitous in chemical and biological processes, including the reduction of dioxygen to water, the reduction of CO(2) to formate, and the production/oxidation of hydrogen. In this work we describe intramolecular proton transfer between Ni and positioned pendant amines for the hydrogen oxidation electrocatalyst [Ni(P(Cy)(2)N(Bn)(2)H)(2)](2+) (P(Cy)(2)N(Bn)(2) = 1,5-dibenzyl-3,7-dicyclohexyl-1,5-diaza-3,7-diphosphacyclooctane). Rate constants are determined by variable-temperature one-dimensional NMR techniques and two-dimensional EXSY experiments. Computational studies provide insight into the details of the proton movement and energetics of these complexes. Intramolecular proton exchange processes are observed for two of the three experimentally observable isomers of the doubly protonated Ni(0) complex, [Ni(P(Cy)(2)N(Bn)(2)H)(2)](2+), which have N-H bonds but no Ni-H bonds. For these two isomers, with pendant amines positioned endo to the Ni, the rate constants for proton exchange range from 10(4) to 10(5) s(-1) at 25 °C, depending on isomer and solvent. No exchange is observed for protons on pendant amines positioned exo to the Ni. Analysis of the exchange as a function of temperature provides a barrier for proton exchange of ΔG(?) = 11-12 kcal/mol for both isomers, with little dependence on solvent. Density functional theory calculations and molecular dynamics simulations support the experimental observations, suggesting metal-mediated intramolecular proton transfers between nitrogen atoms, with chair-to-boat isomerizations as the rate-limiting steps. Because of the fast rate of proton movement, this catalyst may be considered a metal center surrounded by a cloud of exchanging protons. The high intramolecular proton mobility provides information directly pertinent to the ability of pendant amines to accelerate proton transfers during catalysis of hydrogen oxidation. These results may also have broader implications for proton movement in homogeneous catalysts and enzymes in general, with specific implications for the proton channel in the Ni-Fe hydrogenase enzyme.     

Inverse potassium hydride: a theoretical study

Results of an experimental study on the unusual "inverse" charge state (H(+)Na(-)) in salts where the H(+) ion is sequestered, combined with our earlier theoretical calculations on an unsequestered model compound (Me(3)N-H(+)...Na(-)), prompted us to further investigate such systems. In particular, we examined Et(3)N-H(+)...K(-) because considerations of the proton affinity of the amine and of the metal-hydride bond strength suggested that this ion-pair complex might be more stable to proton abstraction than was Me(3)N-H(+)...Na(-). In the present work, the ground-state potential energy surface of the Et(3)N-H(+)...K(-) ion pair was examined using second-order M?ller-Plesset perturbation theory and 6-311++G basis sets. We found Et(3)N-H(+)...K(-) to be metastable to dissociation with a barrier of 8 kcal mol(-1) (computed at the CCSD(T) level of theory). This barrier indeed is substantially larger than that found earlier for (Me(3)N-H(+)...Na(-)) and suggests that unsequestered inverse-charged H(+)M(-) ion-pair salts may offer a reasonable route to creating high-energy materials if a means for synthesizing them in the laboratory can be designed.     

Ferroelectricity induced by ordering of twisting motion in a molecular rotor

A novel mononuclear metal-organic compound, [Cu(Hdabco)(H(2)O)Cl(3)] (1, dabco = 1,4-diazabicyclo[2.2.2]octane) in which the Cu(II) cation adopts a slightly distorted bipyramidal geometry where the three Cl anions constitute the equatorial plane and the Hdabco cation and H(2)O molecule occupy the two axial positions, was synthesized. Its paraelectric-to-ferroelectric phase transition at 235 K (T(c)) and dynamic behaviors were characterized by single crystal X-ray diffraction analysis, thermal analysis, dielectric and ferroelectric measurements, second harmonic generation experiments, and solid-state nuclear magnetic resonance measurements. Compound 1 behaves as a molecular rotor above room temperature in which the (Hdabco) part rotates around the N···N axis as a rotator and the [Cu(H(2)O)Cl(3)] part acts as a stator. In the temperature range 235-301 K, a twisting motion of the rotator is confirmed. Below the T(c), the motions of the rotor are frozen and the molecules become ordered, corresponding to a ferroelectric phase. Origin of the ferroelectricity was ascribed to relative movements of the anions and cations from the equilibrium position, which is induced by the order-disorder transformation of the twisting motion of the molecule between the ferroelectric and paraelectric phases. Study of the deuterated analogue [Cu(Ddabco)(D(2)O)Cl(3)] (2) excludes the possibility of proton ordering as the origin of the ferroelectricity in 1.     

Liquid structure of room-temperature ionic liquid, 1-Ethyl-3-methylimidazolium bis-(trifluoromethanesulfonyl) imide

The liquid structure of 1-ethyl-3-methylimidazolium bis-(trifluoromethanesulfonyl) imide (EMI(+)TFSI(-)) has been studied by means of large-angle X-ray scattering (LAXS), (1)H, (13)C, and (19)F NMR, and molecular dynamics (MD) simulations. LAXS measurements show that the ionic liquid is highly structured with intermolecular interactions at around 6, 9, and 15 A. The intermolecular interactions at around 6, 9, and 15 A are ascribed, on the basis of the MD simulation, to the nearest neighbor EMI(+)...TFSI(-) interaction, the EMI(+)...EMI(+) and TFSI(-)...TFSI(-) interactions, and the second neighbor EMI+...TFSI(-) interaction, respectively. The ionic liquid involves two conformers, C(1) (cis) and C(2) (trans), for TFSI(-), and two conformers, planar cis and nonplanar staggered, for EMI(+), and thus the system involves four types of the EMI(+)...TFSI(-) interactions in the liquid state by taking into account the conformers. However, the EMI(+)...TFSI(-) interaction is not largely different for all combinations of the conformers. The same applies alsoto the EMI(+)...EMI(+) and TFSI(-)...TFSI(-) interactions. It is suggested from the 13C NMR that the imidazolium C(2) proton of EMI(+) strongly interacts with the O atom of the -SO(2)(CF(3)) group of TFSI(-). The interaction is not ascribed to hydrogen-bonding, according to the MD simulation. It is shown that the liquid structure is significantly different from the layered crystal structure that involves only the nonplanar staggered EMI(+) and C(1) TFSI(-) conformers.     

1H and (17)O NMR detection of a lanthanide-bound water molecule at ambient temperatures in pure water as solvent

Lanthanide complexes of a tetra-amide derivative of DOTA (structure 4 in text) with four extended carboxymethyl esters have been characterized by X-ray crystallography and multinuclear NMR spectroscopy. [Eu(4)(H(2)O)](triflate)(3) crystallized from water in the monoclinic, P(21/)(c) space group (a = 10.366 A, b = 22.504 A, c = 23.975 A, and beta = 97.05 degrees ). The Eu(3+) cation is bound to four macrocyclic nitrogen atoms (mean Eu-N = 2.627 A) and four amide oxygen atoms (mean Eu-O(amide) = 2.335 A) in a square antiprismatic geometry with a twist angle of 38.5 degrees between the N4 and O4 planes. A single bound water molecule (Eu-O(W) = 2.414 A) occupies a typical monocapped position on the O4 surface. In pure water, resonances corresponding to a single Eu(3+)-bound water molecule were observed in the (1)H (53 ppm) and (17)O (-897 ppm) NMR spectra of [Eu(4)(H(2)O)](triflate)(3) at 25 degrees C. A fit of the temperature-dependent Eu(3+)-bound (1)H and (17)O water resonance line widths in acetonitrile-d(3) (containing 4% v/v (17)O enriched water) gave identical lifetimes (tau(m)(298)) of 789 +/- 50 micros (in water as solvent; a line shape analysis of the Eu(3+)-bound water resonance gave a tau(m)(298) = 382 +/- 5 micros). Slow water exchange was also evidenced by the water proton relaxivity of Gd(4) (R(1) = 2.2 mM(-1) s(-1), a value characteristic of pure outer-sphere relaxation at 25 degrees C). With increasing temperature, the inner-sphere contribution gradually increased due to accelerated chemical exchange between bound water and bulk water protons. A fitting of the relaxation data (T(1)) to standard SBM theory gave a water proton lifetime (tau(m)(298)) of 159 micros, somewhat shorter than the value determined by high-resolution (1)H and (17)O NMR of Eu(4). Exchange of the bound water protons in Gd(4) with bulk water protons was catalyzed by addition of exogenous phosphate at 25 degrees C (R(1) increased to 10.0 mM(-1) s(-1) in the presence of 1500-fold excess HPO(4)(2-)).     

First observation of ultrafast intramolecular proton transfer rate between electronic ground states in solution

Despite the importance of ultrafast (time scale exceeding 10(-11) s) intramolecular proton transfer (PT) events between electronic ground states in solution, experimental determination of the rates of such reactions has not yet been accomplished because of the limitations of the utilized methods. The objective of this study was to evaluate the PT rates of intramolecular O···H···O hydrogen-bonded systems in solution through the (1)H spin-lattice relaxation times of the hydroxyl protons, induced by the (1)H-(17)O dipolar interactions (T(1dd)(OH)), taking into account the contribution of the OH reorientational motion to T(1dd)(OH). Solutions of the benzoic acid dimer (BA dimer), 1-benzoyl-6-hydroxy-6-phenylfulvene (Fulvene), and dibenzoylmethane (DBM) were chosen as test systems. For Fulvene in CCl(4), the PT time, τ(PT), was deduced to be 7 × 10(-11) s. In the case of the BA dimer in CCl(4), the τ(PT) value was considerably greater than the OH reorientational correlation time, τ(R(OH)) = 4.3 × 10(-11) s. In contrast, the experimental results for DBM in CCl(4) indicated that the proton is located about midway between the two oxygen atoms, that is, the PT potential energy surface is a single well or a double well with a PT barrier near or below the zero-point energy.     

DFT investigation of the tri(amino)amine N(NH(2))(3)(2+) and the tri(azido)amine N(N(3))(3)(2+) dications and related mixed amino(azido)ammonium ions (N(3))(x)N(NH(2))(4-x)(+) (x = 0-4)(1)

Structures of the tri(amino)amine N(NH(2))(3)(2+) and the tri(azido)amine N(N(3))(3)(2+) dications were calculated at the density functional theory (DFT) B3LYP/6-311+G level. The tri(amino)amine dication (NH(2))(3)N(2+) (1) was found to be highly resonance stabilized with a high kinetic barrier for deprotonation. The structures of diamino(azido)amine dication (NH(2))(2)N(N(3))(2+) (2), amino(diazido)amine dication (NH(2))N(N(3))(2)(2+) (3), and tri(azido)amine dication (N(3))(3)N(2+) (4) were also found to be highly resonance stabilized. The structures and energetics of the related mixed amino(azido)ammonium ions (N(3))(x)N(NH(2))(4-x)(+) (x = 0-4) were also calculated.     

Microsolvation of HCl within cold NH3 clusters

The solid state solvation of HCl molecules with small ammonia clusters at an average temperature of 100 K was investigated by on-the-fly molecular dynamics methodology. Structures close to the proton jump from HCl molecule to the ammonia have been further checked with the MP2/aug-cc-pvDZ calculations. Ionization of HCl and/or sharing of the proton were found. Two Zundel-type ions were observedone with proton being shared between ammonium ion and Cl (-) anion (Cl (-)...H (+)...NH 3) in all complexes, and the second, between hydrogen chloride and Cl (-) anion in the HCl...Cl (-)...NH 4 (+)...(NH 3) 2 complex. However, in contrast to methanol clusters, ammonia clusters are not good for the proton wires since once the proton moves to ammonia, it is localized on the ammonium ion units.     

Fluorescence excitation and excited state intramolecular proton transfer of jet-cooled naphthol derivatives: part 2. 2-Hydroxy-1-naphthaldehyde

The S(1)← S(0) fluorescence excitation spectrum of jet-cooled 2-hydroxy-1-naphthaldehyde (2H1N) with origin at 26,668 cm(-1) has been measured. Nine totally symmetric modes and three non-totally symmetric modes have been assigned in the excitation spectrum. Ab initio calculations indicate that 2H1N undergoes a planarity change upon excitation, which may account for the unusual intensity of non totally symmetric vibrational modes in the excitation spectrum. A number of low intensity features were observed on the low energy side of the origin which have been assigned to the 2H1N dimer rather than different ground state confomers of 2H1N. The origin of the S(1)← S(0) electronic transition of the dimer lies at ~26,401 cm(-1); combinations of two low frequency intermolecular modes of the dimer (59 cm(-1) and 17 cm(-1)) were also observed. The occurrence of excited state intramolecular proton transfer (ESIPT) in 2H1N cannot be proven on the basis of this work. A comparison of the (photo)physical properties of 2H1N with 1-hydroxy-2-naphthaldehyde (1H2N) [A. McCarthy and A.A. Ruth, PCCP, 2011, 13, 7485-7499 (Part 1)], however, indicate the plausibility of an ESIPT process in 2H1N. The strength of the intramolecular hydrogen bond (IMHB) in 2H1N was computed as ~10.6 kcal/mol, a value comparable to the IMHB strength of 1H2N. The establishment of a lower limit on the state lifetimes of 2H1N, of ~1.8 ps, indicates that any proposed ESIPT reaction in 2H1N may not proceed barrierlessly. Above an excess energy of ~1000 cm(-1), the intensity of the fluorescence excitation spectrum reduces significantly, indicating the onset of a non-radiative decay mechanism.     

DFT energy surfaces for aminopurine homodimers and their conjugate acid ions

Dimers of free nucleobases with their conjugate acid ions can be assigned to either of two categories: protonated dimers or proton-bound dimers. In the former, the extra proton attaches to a lone pair of a neutral dimer. In the latter, the extra proton is situated between two lone pairs and participates in a proton bridge. In general, proton-bound dimers are found to be more tightly held together than protonated dimers. While neutral adenine and its isomer 8-aminopurine (C(5)H(5)N(5)) are substantially more stable than their 7H tautomers, their conjugate acid ions and those of their respective 7H tautomers have nearly the same heats of formation. Correspondingly, the most stable (C(5)H(5)N(5))2H+ structures contain 7H tautomers as the neutral partner. Proton transit from one partner to the other within the most stable protonated dimer of 8-aminopurine has a low barrier (6 kJ mol(-1)). The potential energy curve for the NH stretch in that case is better fitted as a double minimum rather than as a harmonic potential. Purine-purine mismatches have been observed in nucleic acids, to which calculated (C(5)H(5)N(5))2H+ dimer geometries appear nearly isosteric.     

Quantum dynamics of proton migration in H2O dications: H2+ formation on ultrafast timescales

Irradiation of isolated water molecules by few-cycle pulses of intense infrared laser light can give rise to ultrafast rearrangement resulting in formation of the H(2) (+) ion. Such unimolecular reactions occur on the potential energy surface of the H(2)O(2+) dication that is accessed when peak laser intensities in the 10(15) W cm(-2) range and pulse durations as short as 9-10 fs are used; ion yields of ~1.5% relative to the H(2)O(+) ion are measured. We also study such reactions by means of time-dependent wavepacket dynamics on an ab initio potential energy surface of the dication and show that a proton, generated from O-H bond rupture, migrates towards the H-atom, and forms vibrationally excited H(2)(+) in a well-defined spatial zone.     

A method for dynamical characterization and high resolution 1H-NMR in dipolar coupled systems: application to liquid crystals

We study the variation of 13C spectra as function of off-resonances in protons during decoupling, for continuous wave (cw) and small phase incremental alternation with 64-step (SPINAL-64) schemes in the liquid crystals 4-n-octyl-4'-cyanobiphenyl (8CB) and 4-n-pentyl-4'-cyanobiphenyl (5CB). The self-decoupling mechanism induced by the strong homonuclear dipolar interactions provides a method to study the dynamics of the proton system through the 13C spectra. In the n-cyanobiphenyl (nCB) liquid crystals each nonquaternary carbon is coupled through dipolar interactions to more than one proton constituting a SI(N) group (with N> or =2). We extend the analytical treatment of the variation of the 13C spectrum with the off-resonance, described for SI groups, to SI(N) under cw decoupling. The dependence of the maxima of the 13C spectra as a function of proton off-resonance follows a Lorentzian line that depends on the rate of exchange among proton spin states. From the fitting parameters of this curve and the heteronuclear interaction measured in cross-polarization experiments, we extract dynamical information of the intramolecular 1H-1H interactions. In the case of SPINAL-64 we experimentally observe the same behavior. Under both kinds of decouplings, we characterize the chemical shift of the protons through the NMR spectra of carbons. The resulting values are in very good agreement with those obtained by other methods.     

Crystal structures and spectroscopic characterization of radical cations and dications of oligothiophenes stabilized by annelation with bicyclo[2.2.2]octene units: sterically segregated cationic oligothiophenes

The remarkably stable SbF(6)(-) salts of the radical cations of bithiophene 1(2T) and terthiophene 1(3T), completely surrounded by bicyclo[2.2.2]octene (BCO) units, were obtained by one-electron oxidation of the neutral precursors with NO(+)SbF(6)(-), and their solid-state structures were determined by X-ray crystallography. In these radical cations, the presence of quinoidal character was apparent, as shown by the increased planarity and by comparison of the bond lengths with those of the neutral precursors. The shortest intermolecular pi-pi distances in the crystal structure of 1(2T)(*)(+)SbF(6)(-) (distance between two sp(2) carbon atoms, 4.89 A) and 1(3T)(*)(+)SbF(6)(-) (distance between an sp(2) carbon and a sulfur atom, 3.58 A) were found to be longer than the sums of the van der Waals radii of the corresponding atoms. In accord with this, no apparent change was observed in ESR and UV-vis-NIR spectra of solutions of 1(2T)(*)(+) and 1(3T)(*)(+) upon lowering the temperature, indicating that the pi- (or sigma-) dimer formation is inhibited in solution as well as in the solid state. The dications 1(2T)(2+) and 1(3T)(2+) were generated with the stronger oxidant SbF(5) in CH(2)Cl(2) at -40 degrees C and characterized by NMR spectroscopy. In the (1)H NMR spectra, two conformers were observed for each dication of both 1(2T)(2+) (transoid (t) and cisoid (c)) and 1(3T)(2+) (t,t and c,t) at room temperature due to the high rotational barrier around the inter-ring bond(s) between thiophene rings, which was caused by the enhanced double bond character of these bonds following two-electron oxidation. This is supported by DFT calculations (B3LYP/6-31G(d)), which predicted the rotational barriers in the dications of unsubstituted bithiophene and terthiophene to be 27.6 and 22.9 kcal mol(-)(1), respectively. In the case of quaterthiophene and sexithiophene surrounded by BCO frameworks 1(4T) and 1(6T), oxidation with even one molar equivalent of NO(+)SbF(6)(-) afforded the dication salts 1(4T)(2+)2SbF(6)(-) and 1(6T)(2+)2SbF(6)(-), which were isolated as stable single crystals and allowed the X-ray crystallography. In their crystal structures, the cationic pi-systems became planar again due to the great contribution of quinoidal resonance structures, and the pi-systems, which were arrayed in a parallel geometry, were also segregated by the steric effect of BCO units. The degree and tendency of changes in the bond lengths of thiophene rings of 1(4T)(2+) and 1(6T)(2+) as compared with neutral precursors were similar to those of 1(2T)(*)(+)SbF(6)(-) and 1(3T)(*)(+)SbF(6)(-), respectively, implying that the contribution of quinoidal character is modulated by the amount of positive charge per thiophene unit.     

Reactivity of the CHBr2+ dication toward molecular hydrogen

Structural aspects as well as the stability and reactivity of the CHBr(2+) dication are studied both experimentally and theoretically. Translational energy distributions of the CHBr(+) products from charge transfer between CHBr(2+) and Kr indicate that the dication exists in two isomeric forms, H-C-Br(2+) and C-Br-H(2+). In the reaction of CHBr(2+) with H(2), the dominant channel corresponds to proton transfer leading to CBr(+) + H(3)(+). Other reaction channels involve the formation of the intermediates CH(3)Br(2+) and CH(2)BrH(2+), respectively. Both of the latter dications can either lose a proton to form CH(2)Br(+) or undergo a spin-isomerization followed by cleavage of the C-Br bond. The proposed mechanisms are supported by DFT calculations and deuterium labeling experiments.     

Comparative ab initio study of the structures and stabilities of the ethane dication C2H6(2+) and its silicon analogues Si2H6(2+) and CSiH6(2+)

Ab initio MP2/6-311G and QCISD(T)/6-311G levels as well as Gaussian-2 theory were used to perform a comparative study of the structures and stabilities of the ethane dication C(2)H(6)(2+) and its silicon analogues Si(2)H(6)(2+) and CSiH(6)(2+). Similar to previous HF/6-31G results, our present calculations also indicate that the two-electron three-center (2e-3c) bonded carbonium-carbenium structure 1 is more stable than the doubly hydrogen bridged diborane-type structure 2 by about 12 kcal/mol. For the silicon analogue Si(2)H(6)(2+) the calculations, however, indicate that the 2e-3c bonded siliconium-silicenium structure 8 is about 9 kcal/mol less stable than doubly hydrogen bridged structure 9. Similar results were also computed for carbon-silicon mixed CSiH(6)(2+) dication structures. These studies are in agreement with the more electropositive character of silicon compared to carbon. Possible dissociation paths of the minimum structures were also calculated.     

Synthesis of [(MeCyt)2H]I-structure and stability of a dimeric threefold hydrogen-bonded 1-methylcytosinium 1-methylcytosine cation

Reaction of trimethylsilyl-protected cytosine with methyl iodide afforded N1-methylated product. Subsequent treatment with ethanol resulted in cleavage of the protection group forming [(MeCyt)2H]I (4). Identity of was confirmed by microanalysis, mass spectrometry, 1H and 13C NMR spectroscopy and by single-crystal X-ray diffraction analysis. Crystals of consist of dimeric [(MeCyt)2H]+ cations and I- anions. These ions are arranged in the crystal such that there is a strong base stacking (mean stacking distance 3,467 angstroms) and, furthermore, pi interactions between I- and cytosine rings (mean distance 3,737 angstroms). The dimeric [(MeCyt)2H]+ cations are centrosymmetric having three strong hydrogen bonds, namely two terminal N4-H...O' ones (N4...O' 2.815(4) angstroms) and a central N3-H...N3' (N3...N3' 2.813(4) angstroms) one. Quantum chemical calculations on the DFT level of theory show that the gas phase structure of the dimeric cation exhibits two different terminal N-HO hydrogen bonds, a stronger (N4...O' 2.722 angstroms) and a weaker one (N4'...O 2.960 angstroms). The central N3-HN3[prime or minute] hydrogen bond (N3...N3' 2.852 angstroms) was characterized to have an unsymmetrically located proton and a typical double minimum potential with a very low activation barrier. The interaction energy between [(MeCyt)H]+ and MeCyt yielding [(MeCyt)2H]+ was calculated to be -42.4 kcal mol(-1)(ZPE and BSSE corrected). Comparison with the interaction energy (calculated on the same level of the theory) between cytosine and guanine yielding the triply hydrogen-bonded Watson-Crick dimer (-24.2 kcal mol(-1)) revealed a much higher stability of the hydrogen bonds in [(MeCyt)2H]+.     

Bifurcated hydrogen-bonding effect on the shielding and coupling constants in trifluoroacetyl pyrroles as studied by 1H, 13C and 15N NMR spectroscopy and DFT calculations

According to the (1)H, (13)C and (15)N NMR spectroscopic data and DFT calculations, bifurcated N--H...N and N--H...O intramolecular hydrogen bond is shown to be present in 2-trifluoroacetyl-5-(2'-pyridyl)-pyrrole. This bifurcated hydrogen bond causes an increase in the absolute size of the (1)J(N,H) coupling constant by about 6 Hz, and the deshielding of the bridge proton by 2 ppm. DFT calculations show that the influence of the N--H...N and N--H...O intramolecular hydrogen bonds on the (1)J(N,H) coupling and proton shielding is almost additive, although the components of the bifurcated hydrogen bond slightly weaken each other. In 2-trifluoroacetyl-5-(2'-pyridyl)-pyrrole, the coupling constants involving the fluorine and the N--H covalent bond nuclei depend dramatically on the spatial position of the pyridine ring. The pyridine ring rotation operates as a quantum switch controlling the spin information transfer between the (19)F and (15)N nuclei, as well as the proton.     

Dihydrogen trioxide clusters, (HOOOH)n (n = 2-4), and the hydrogen-bonded complexes of HOOOH with acetone and dimethyl ether: implications for the decomposition of HOOOH

Hydrogen-bonded gas-phase molecular clusters of dihydrogen trioxide (HOOOH) have been investigated using DFT (B3LYP/6-311++G(3df,3pd)) and MP2/6-311++G(3df,3pd) methods. The binding energies, vibrational frequencies, and dipole moments for the various dimer, trimer, and tetramer structures, in which HOOOH acts as a proton donor as well as an acceptor, are reported. The stronger binding interaction in the HOOOH dimer, as compared to that in the analogous cyclic structure of the HOOH dimer, indicates that dihydrogen trioxide is a stronger acid than hydrogen peroxide. A new decomposition pathway for HOOOH was explored. Decomposition occurs via an eight-membered ring transition state for the intermolecular (slightly asynchronous) transfer of two protons between the HOOOH molecules, which form a cyclic dimer, to produce water and singlet oxygen (Delta (1)O 2). This autocatalytic decomposition appears to explain a relatively fast decomposition (Delta H a(298K) = 19.9 kcal/mol, B3LYP/6-311+G(d,p)) of HOOOH in nonpolar (inert) solvents, which might even compete with the water-assisted decomposition of this simplest of polyoxides (Delta H a(298K) = 18.8 kcal/mol for (H 2O) 2-assisted decomposition) in more polar solvents. The formation of relatively strongly hydrogen-bonded complexes between HOOOH and organic oxygen bases, HOOOH-B (B = acetone and dimethyl ether), strongly retards the decomposition in these bases as solvents, most likely by preventing such a proton transfer.