Equilibria of the 5-substituted-1,2-acylated tetrazoles and imidoyl azides

Equilibrium of acylated-5-alkyloxy (aryloxy) tetrazoles and acylated-imidoyl azides was measured by (1)H NMR and/or IR spectroscopy. In nonpolar solvents the relatively weakly electron-withdrawing acyl group (CO(2)CH(3)) favored acylation at the 2-position of the 5-substituted tetrazoles. Moderately electron-withdrawing groups (CO(2)CH(2)CCl(3), CO(2)CCl(3)) move the equilibrium to the side of 1-acyl-5-substituted tetrazole. Strong electron-withdrawing groups (CN, SO(2)CH(3), SO(2)CF(3)) favored the formation of the azide. The rate of isomerization of tetrazoles and the azide increases at higher concentrations and polarity of the solvent. In solid phase or in the nonpolar solvent (diethyl ether), only one of the three isomers is present, its structure depending on the nature of the substituents at the 1 or 2 positions of tetrazoles.     

Quantum-Chemical Study of the Structure and Reactivity of Pyrazol-5-ones and Their Thio and Seleno Analogs: VII. Electronic and Steric Structure of Radicals Derived from 4-Hydroxyimino-3-methyl-4,5-dihydropyrazol-5-ones

The structure of iminoxyl radicals formed by electrochemical oxidation of 4-hydroxyimino-3-methyl-4,5-dihydropyrazol-5-ones was characterized by nonempirical (ROHF and UHF with wide-range variation of basis sets), UB3LYP 6-31G*//UB3LYP 6-31G*, and semiempirical calculations (AM1 and PM3 involving annihilation procedures). The radicals were found to exist as two configurational isomers Z and E, the former being more stable by 6.0-7.5 kJ/mol. All heavy atoms in the radicals lie in one plane. The experimental hyperfine coupling constants are reproduced on a quantitative level only in terms of nonempirical calculations with inclusion taken of electron correlation (UB3LYP), while the effect of geometry optimization level is not strong. Both nonempirical and semiempirical calculations based on the unrestricted Hartree-Fock methods reveal qualitative similarity of all the examined radicals.     

Synthesis and structure of heterocyclic derivatives of pyran-2-ones based on the dimer of 4,6-di(<Emphasis Type="Italic">tert</Emphasis>-butyl)-3-hydroxy-1,2-benzoquinone

Acid-catalyzed reaction of 6,10a-dihydroxy-3,4a,7,9-tetra(tert-butyl)-1,2,4a,10a-tetrahydrodibenzo-[b,e][1,4]dioxine-1,2-dione with 2-methylquinoline derivatives led to the formation of a previously unknown system 6-[(Z)-2-(quinolin-2-yl)-1-hydroxyethen-1-yl]pyran-2-one. The molecular structure of 3,5-di(tert-butyl)-6-[(Z)-2-(7,8-dimethyl-4-chloroquinolin-2-yl)-1-hydroxyvinyl]pyran-2-one was established by XRD method; the energy and structural characteristics of its isomers in the gas phase and in a polar solvent were calculated by quantumchemical methods (B3LYP/6-31G**).     

Computational Studies on Intramolecular Cycloadditions of Azidoenynes and Azidobutenenitriles to Give 6H‐Pyrrolo[1,2‐c][1,2,3]triazoles and 5H‐Pyrrolo[1,2‐d]tetrazoles

Energetics of intramolecular cycloadditions of azidoenynes and azidobutenenitriles to give 6H‐pyrrolo[1,2‐c][1,2,3]triazoles and 5H‐pyrrolo[1,2‐d]tetrazoles have been calculated at the B3LYP/6.311++G(3df,3pd) level of theory in ideal gas and in H₂O as solvent. Stabilities of the corresponding anions, tautomers, and isomers are discussed. Transition states of the cyclization of parent compounds are determined at the same level of theory.     

1H- und 13C-NMR-Untersuchungen zur Struktur N-substituierter Tetrazole—Die Strukturen des N-Methoxycarbonyl-, N-Acetyl- und N-(Tri-n-butylstannyl)-tetrazols sowie Substituenteneffekte auf δ13C und 1J(CH)

The ¹H and ¹³C NMR spectra of several isomeric N-substituted tetrazoles have been investigated. ¹³C NMR is shown to be more useful for distinguishing between structural isomers of N-substituted tetrazoles except for those carrying electropositive substituents like SnBu₃. Correlations of δC-5 (inverse) and ¹J(C-5,H) with s?₁ found for 1-substituted tetrazole allowed the identification of the N SnBu₃ derivative as 1-(tri-n-butylstannyl)tetrazole. The phenyl carbon chemical shift difference ΔC′ = δC-3′-δC-2′ is insignificant for structure elucidation and conformational studies of N-substituted 5-phenyltetrazoles; ΔH′ from ¹H NMR spectra seems to be more useful.     

Ab initio and molecular mechanics calculations on imine derivatives: A study of the rotational barriers and the development of MM2 parameters

The application of molecular mechanics methods for the study of structures has become a standard approach to conformational analysis. The MM2 force field has been extended to include imines. In general, a diverse group of aliphatic and aromatic imine structures can now be treated. The rotational energy profiles and barriers to N-substituted imines about the C_sp2? C_sp2 single bonds adjacent to C?N functional group were calculated via ab initio MO theory. Information obtained from the quantum mechanical calculations at the 3-21G, 6-31G*, and MP4/6-31G* //6-31G* levels was used both to study the phenomena involved and to parameterize MM2. The syn-anti isomerization was also studied, and the mechanistic pathways have been evaluated. In cases where the comparison with experimental data can be made, the agreements are good.     

Double Bond Migration Mechanism in Allyl Systems Involving the Hydroxide Ion. 1. Gas-Phase and Born–Onsager Models

The reaction profile of the 1,3-prototropic rearrangement of propene involving the hydroxide ion was studied by the RHF/6-31+G*, MP2/6-31+G*, and B3LYP/6-31+G* ab initio methods within the framework of the gas-phase and Born–Onsager models (the latter including solvent effects). Propene isomerization in the presence of the hydroxide ion in the gas phase may occur with participation of a base proton with the intermediate formation of a water complex of the allyl ion. The transition state energy of this transformation is lower than the total energy of the starting hydroxide ion and propene and much lower than the sum of the energies of the isolated propenide ion and water molecule. An activation barrier arises when the solvent effect is included in calculation within the framework of the Born–Onsager model; the intermediate complex is much less stable than the complex considered in the gas-phase model. As in the latter, the mechanism of multiple bond migration is energetically preferable to the mechanism involving proton transfer to the reaction medium.     

Quantum chemical studies on structure, conformation and isomerization of nitroso, nitro substituted benzene and 1,3-cyclopentadiene

The molecular structure, conformational stability and isomerization of nitroso, nitro substituted benzene and 1,3-cyclopentadiene in gas phase have been investigated using ab initio and density functional theory methods. The molecular geometries and energetics of possible conformers were obtained by employing MP2, B3LYP and B3PW91 levels of theory implementing 6-31G* basis set. The relative stabilities of the conformations were evaluated from the energy differences of the structure. Chemical hardness (η) and chemical potential (μ) were calculated at HF/6-31G* level of theory for all the positional and geometrical isomers to study the maximum hardness principle. Each optimized structure has been tested against the imaginary frequencies at MP2/6-31G* level of theory in order to be sure they are located at energy minimum.     

Theoretical Study of Molecular Structure, Tautomerism, and Geometrical Isomerism of N-Methyl- and N-Phenyl-Substituted Cyclic Imidazolines, Oxazolines, and Thiazolines

The geometries of various tautomers and isomers of 2-methylamino-2-imidazoline, 2-methylamino-2-oxazoline, 2-methylamino-2-thiazoline, 2-phenylamino-2-imidazoline, 2-phenylamino-2-oxazoline, and 2-phenylamino-2-thiazoline have been studied using the Becke3LYP/6–31+G(d,p) DFT, ONIOM(Becke3LYP/6–31+G(d,p):HF/3–21G^*) and ONIOM(Becke3LYP/6–31+G(d,p):AM1) methods. The optimized geometries indicate that these molecules show a distinctly nonplanar configuration of the cyclic moieties. In the gas phase, the amino tautomers (with exception of 2-phenylamino-2-imidazoline) are computed to be more stable than the imino tautomers. Of the two possible (E and Z) isomers of methyl and phenyl derivatives of imino-oxazolidine and imino-thiazolidine species, the (Z) isomers have the lowest energy. The iminozation free energies in the gas phase were found to be 5 – 15 kJ/mol. Absolute values of K _T depend strongly on the accuracy of the method used for calculation of free energy. Solvation (using the MD simulations) causes, in most cases, a shift in tautomeric preference toward the imino species.     

Conformational analysis of 1,3,2-dioxathiane and its oxides

Computer simulation of the routes of conformational isomerization of 1,3,2-dioxathiane and its Soxides by nonempirical quantum-chemical method RHF/6-31G(d) revealed the main and local minima and transition states of this process. It was shown that the barrier of ring inversion is reduced in going from 1,3,2-dioxathiane to its oxides. The established ΔG ⁰ (300 K) value of S=O group in cyclic sulfite (−15.0 kJ mol⁻¹) is in good agreement with the experimental data.     

α-羟基化吡咯烷亚硝胺代谢及形成DNA加合物反应机理的理论研究

采用密度泛函理论, 在B3LYP/6-31G**水平上, 研究了气相和水溶剂中, α-羟基化吡咯烷亚硝胺(α-hydroxylation-NPYR, A)代谢为终致癌物重氮氢氧化物(B)、重氮烷阳离子(C)和氧离子(D), 以及C与鸟嘌呤碱基相互作用的反应机理. 化合物A代谢为终致癌物, 涉及异构化和质子化过程, 是相对容易进行的放热反应. 终致癌物C与鸟嘌呤在N7位形成DNA加合物F和G的反应, 遵循S_N2机理. 加合物G由F异构形成, 且有相对高的异构化能(气相: 244.77 kJ/mol; 水溶剂中: 234.83 kJ/mol), 这与实验上得到加合物G是主要癌变物的结果一致.     

The site of protonation of bifunctional bases with competing basic centers. I. Aromatic nitriles

The experimental values of the gas-phase proton affinities for a variety of 4-substituted benzonitriles, 4-substitutedN, N-dimethylanilines, and 4-substituted benzaldehydes have been examined by means of correlation analysis techniques and by ab initio quantum mechanical methods (MP2/ 6-31G(d) level). From this study it is concluded that in the gas phase, 4-(dimethylamino)-benzonitrile essentially protonates on the dimethylamino group, while protonated 4-cyanobenzaldehyde is very nearly a 21 mixture of the carbonyl- and cyano-protonated forms.This work is dedicatedin memoriam to Professor Robert W. Taft.     

Ab initio studies of RO− … HOR′ complexes. Solvent effects on the relative acidities of water and methanol

Ab initio molecular orbital calculations are reported for complexes of hydroxide and methoxide anions with water and methanol. The basis set dependence of the results is carefully considered for HO^? ? H₂O. 4-31G and 6-31G* calculations yield similar geometrical predictions; however, the 6-31G* basis set is superior for computing dissociation energies. Further extension to the 6-31G** level provides little change. The dissociation energies for the complexes range from 25 to 37 kcal/mole with hydroxide ion and methanol acting as the strongest base and acid. The difference in gas phase acidities of water and methanol is halved by the introduction of one solvent molecule.     

Conformational analysis of 2,4-dialkyl-1,3,2-dioxaborinanes

Computer modeling using the quantum-chemical empirical MM+ method and nonempirical RHF//6-31G(d), MP2//6-31G(d), and, in individual cases, RHF//3-21G methods was employed to study the potential energy surface of 2,4-dialkyl-1,3,2-dioxaborinanes. The optimal geometry and ¹H NMR spectral data gave values for ∆G ⁰ of the methyl and hexyl substituents at C-4 of the heterocyclic ring equal to 0.6 and 1.6 kcal/mol, respectively.     

Conformational isomerization of 4-methyl-1,3-dioxane

The whole possible course of conformational isomerization of 4-methyl-1,3-dioxane has been established using empirical (MM+) and nonempirical [STO-3G, 3-21G, 6-31G(d) and 6-31G(d,p)] approximations within the limits of the Hartree-Fock method. It was shown that the potential energy surface of this compound contains a principal (equatorial chair conformer) and local minima corresponding to the axial chair conformer and series flexible forms.     

Ab initio Study on Structures and Isomerization of Magnesium Fluorosilylenoid H2SiFMgF

The structures and isomerization of magnesium fluorosilylenoid H2SiFMgF were investigated by ab initio molecular orbital theory. Four equilibrium structures and three isomeric transition states were located and fully optimized at the B3LYP/6-31G(d,p) and G3MP2B3 levels, respectively. Based on the B3LYP/6-31G(d,p) optimized geometries, harmonic frequencies of various structures were obtained and 29Si chemical shifts were calculated. The solvent effects were investigated by means of the polarizable continuum model using THF as a solvent at B3LYP/6-31G(d,p) level. Isomerization paths for isomers were confirmed by intrinsic reaction coordinate calculations. The calculated results show that tetrahedral structure has the lowest energy and is the most stable; tetrahedral, three-membered ring, and p-complex structures are suggested to be the experimentally detectable ones; and σ-complex structure has the highest energy and will not exist.     

Conformational preference and cis-trans isomerization of 4(R)-substituted proline residues

We report here the conformational preference and prolyl cis-trans isomerization of 4(R)-substituted proline dipeptides, N-acetyl-N'-methylamides of 4(R)-hydroxy-L-proline and 4(R)-fluoro-L-proline (Ac-Hyp-NHMe and Ac-Flp-NHMe, respectively), studied at the HF/6-31+G(d), B3LYP/6-31+G(d), and B3LYP/6-311++G(d,p) levels of theory. The 4(R)-substitution by electron-withdrawing groups did not result in significant changes in backbone torsion angles as well as endocyclic torsion angles of the prolyl ring. However, the small changes in backbone torsion angles phi and psi and the decrease of bond lengths r(Cbeta-Cgamma) or r(Cgamma-Cdelta) appear to induce the increase of the relative stability of the trans up-puckered conformation and to alter the relative stabilities of transition states for prolyl cis-trans isomerization. Solvation free energies of local minima and transition states in chloroform and water were calculated using the conductor-like polarizable continuum model at the HF/6-31+G(d) level of theory. The population of trans up-puckered conformations increases in the order Ac-Pro-NHMe < Ac-Hyp-NHMe < Ac-Flp-NHMe in chloroform and water. The increase in population for trans up-puckered conformations in solution is attributed to the increase in population for the polyproline-II-like conformations with up puckering. The barriers DeltaGct++ to prolyl cis-to-trans isomerization for Ac-Hyp-NHMe and Ac-Flp-NHMe increase as the solvent polarity increases, as seen for Ac-Pro-NHMe. In particular, it was identified that the cis-trans isomerization proceeds through the clockwise rotation about the prolyl peptide bond for Ac-Hyp-NHMe and Ac-Flp-NHMe in chloroform and water, as seen for Ac-Pro-NHMe.     

A theoretical insight into the role of counter anions and their interactions in nitropentaamminecobalt(III) toward linkage isomerism-induced photochemical motion

Density functional theory (B3LYP, B3LYP-D3, wB97XD, M062X, and M06L) and ab initio methods (MP2 and CCSD(T)) in conjunction with 6-31+G(d,p) and LanL2DZ were employed to investigate the interaction energies between [Co(NH₃)₅NO₂]²⁺ linkage isomers and chloride and nitrate in both gas phase and solid state. The nature of the chemical bonding has been analyzed by means of the atoms in molecules, electron density shift, natural bond orbitals, symmetry adapted perturbation theory, and energy decomposition analysis. The electronic structures of the two lowest laying singlet states (S_o and S₁) of [Co(NH₃)₅NO₂](NO₃)Cl isomers were also investigated using CASSCF(6,6) with LanL2DZ and 6-31G(d) basis sets. Our results show that [Co(NH₃)₅NO₂]²⁺ linkage isomers interact more strongly with chloride than nitrate. The structures of [Co(NH₃)₅NO₂](NO₃)Cl linkage isomers and their relative stabilities were examined in gas phase and in solid state and confirmed the nitro-complex as the most stable following by a viable intermediate endo-complex. Study of the nitro-nitrito linkage isomerization in [Co(NH₃)₅NO₂](NO₃)Cl revealed that anions form strong electrostatic bonds with [Co(NH₃)₅NO₂]²⁺ leading to decrease in an activation energy compared to the [Co(NH₃)₅ONO]²⁺ isomers. A concerted action of ionic interactions and hydrogen bonds are suspected of regulating the isomerization in solid state. Assessment of various DFT methods with respect to CCSD(T) suggests M062X suitable method for [Co(NH₃)₅NO₂](NO₃)Cl linkage-isomerization study. Potential energy surface calculations at the CASSCF/6-31G(d) level of theory shows that the conical intersection (S₁/S_o) might play an important role in the photoisomerization of [Co(NH₃)₅NO₂](NO₃)Cl.     

Solvent influence on the rotational isomerism in terephthalaldehyde

Experimental and theoretical studies were carried out in order to investigate the rotational isomerism of terephthalaldehyde. The dipole moment measurements and infrared spectroscopy in Ar matrix and using various solvents were performed experimentally. In order to supplement the experimental study, both static and dynamical theoretical calculations were performed. IR spectra and potential energy distribution (PED) were calculated for both cis and trans isomers of terephthalaldehyde in gas phase using B3LYP/6-31G(d,p) level of theory. Further calculations consisted of conformational analysis were performed in order to estimate the rotational barrier and relative stabilities of isomers. The DFT theory with B3LYP functional and four double-zeta and triple-zeta basis sets served as framework for this part of calculations. Semiempirical AM1 and PM3 methods were also used for gas-phase modeling. Molecular dynamics using MM3 force field was applied to study the preferences of solvent molecules’ orientation around the studied molecule. Additionally, the effect of solvent polarity on the Gibbs energy of the trans ⇌ cis equilibrium was analyzed in terms of the continuum dielectric medium models.     

Calculated structures and relative stabilities of furoxan,some 1,2-dinitrosoethylenes and other isomers

The structures and relative stabilities of furoxan and some of its isomers, e.g., the 1,2-dinitrosoethylenes, have been determined by means of ab initio Hartee–Fock and Møller–Plesset calculations. Geometries were optimized at the HF/3-21G, HF/6-31G* and MP2/6-31G* levels, and subsequently used for computing MP2/6-31G*, MP3/6-31G*, and MP4/6-31G* energies. The results are markedly affected by the inclusion of electronic correlation, which renders three of the isomers unstable. It also emphasizes the importance of a zwitterionic contribution to the structure of furoxan, which promotes ring-opening through a cis 1,2-dinitrosoethylene intermediate/transition state that has an MP4/6-31G*//MP2/6-31G* energy that is 31.6 kcal/mol above furoxan.