Comparison of cyclic δ-opioid peptides with non-peptide δ-agonist spiroindanyloxymorphone (SIOM) using the message-address concept: A molecular modeling study

Summary Based upon the message-address concept, this molecular modeling study used the -selective agonist spiroindanyloxymorphone (SIOM) as a molecular template for a conformational search and analysis of -selective opioid peptides. It was assumed that the tyramine moiety plays the same role for -opioid receptor recognition in both peptide and non-peptide ligands. Using 20 reported low-energy conformations of Tyr-cyclo[d-Cys-d-Pen]-OH (JOM-13) for comparison, the geometrical relationship of the two aromatic rings present in SIOM was used for the identification of potential active conformations of JOM-13, from which two -receptor-binding models (I and II) were constructed. Models I and II differ from each other in the arrangement of the peptide backbones. To evaluate the two models, a conformational search of two other known -selective ligands, [d-Pen²,d-Pen⁵]enkephalin (DPDPE) and [d-Pen²,l-Pen⁵]enkephalin (DPLPE) was performed, using the geometrical relationship of the two aromatic rings defined in the two receptor-binding models as a molecular template. Among the conformations generated from the molecular simulation, low-energy conformers of DPDPE and DPLPE conforming to models I and II were identified. Unlike model I, conformers of DPDPE and DPLPE that fit model II contain a cis amide bond in the Gly³ residue.     

The μ-and δ-opioid pharmacophore conformations of cyclic β-casomorphin analogues indicate docking of the Phe3 residue to different domains of the opioid receptors

Summary Cyclic -casomorphin analogues with a d-configured amino acid residue in position 2, such as Tyr-c[-Xaa-Phe-Pro-Gly-] and Tyr-c[-Xaa-Phe-d-Pro-Gly-] (Xaa=d-A₂bu, d-Orn, d-Lys) were found to bind to the -opioid receptor as well as to the -opioid receptor, whereas the corresponding l-Xaa² derivatives are nearly inactive at both. Low-energy conformers of both active and nearly inactive derivatives have been determined in a systematic conformational search or by molecular dynamics simulations using the TRIPOS force field. The obatained conformations were compared with regard to a model for -selective opiates developed by Brandt et al. [Drug Des. Discov., 10 (1993) 257]. Superpositions as well as electrostatic, lipophilic and hydrogen bonding similarities with the -opioid receptor pharmacophore conformation of t-Hpp-JOM-13 proposed by Mosberg et al. [J. Med. Chem., 37 (1994) 4371, 4384] were used to establish the probable -pharmacophoric cyclic -casomorphin conformations. These conformations were also compared with a -opioid agonist (SNC 80) and the highly potent antagonist naltrindole. These investigations led to a prediction of the -and -pharmacophore structures for the cyclic -casomorphins. Interestingly, for the inactive compounds such conformations could not be detected. The comparison between the -and -pharmacophore conformations of the cyclic -casomorphins demonstrates not only differences in spatial orientation of both aromatic groups, but also in the backbone conformations of the ring part. In particular, the differences in ² and ² (70°,-80°; 165°,55°) cause a completely different spatial arrangement of the cyclized peptide rings when all compounds are matched with regard to maximal spatial overlap of the tyrosine residue. Assuming that both the -and -pharmacophore conformations bind with the tyrosine residue in a similar orientation at the same transmembrane domain X of their receptors, the side chain of Phe³ as a second binding site has to dock with different domains.This paper is based on a presentation given at the 14th Molecular Graphics and Modelling Society Conference, held in Cairns, Australia, August 27–September 1, 1995.     

Charge control in the formation of complexes of phenol with unsaturated compounds containing organometallic substituents from group IV

The resonance donor effect of the , conjugation of R₃M and R₃MCH₂ (M = Si, Ge, Sn; R is an alklyl group) substituents with the triple bond in compounds R₃MC=CX and R₃MCH₂CCX (X = H, R) changes on passing from isolated molecules to their H-complexes. A partial ⁺ charge on the triple bond enhances , conjugation; a partial ^– charge on the triple bond has practically no effect on the resonance properties of R₃M substituents, whereas the , conjugation of R₃MCH₂ substituents diminishes owing to the effect of negative direct resonance interaction. The effect of , conjugation on the effective negative charges of the carbon atoms in the -CC- fragments was estimated quantitatively.Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 6, pp. 1041–1046, June, 1994.This work was supported by the Russian Fundation for Basic Research (Grant 93-03-18372).     

A uniform molecular model of δ opioid agonist and antagonist pharmacophore conformations

On the basis of a model of the pharmacophore conformations of agonist of the -opioid receptor the corresponding -antagonist conformations were determined by means of force field calculations. The results explain the unusual behavior of several cyclic -casomorphin analogues on the molecular level. Thus, for instance, the model helps to understand why Tyr-c[D-Orn-2-Nal-D-Pro-Gly] is a mixed -agonist and -antagonist. Furthermore, the model is consistent with low energy conformations of other -antagonists such as Tyr-Tic-Phe, Tyr-Tic-Phe-Phe, naltrindole and BNTX. The occupation of a special spatial area by bulky groups close to the protonated N-terminus of opioid peptides is assumed to be highly critical for the switch from agonist to antagonist behavior.     

Bromination of polyfluorinated α,β-enones

Polyfluoroalkyl-,-enones readily add Br₂ to give ,ß-dibromoketones. The latter are readily and regioselectively dehydrobrominated to -bromo-,-enones on treatment with K₂CO₃ or NEt₃ Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 12, pp. 2134–2136, December, 1993.     

Solubility Study of Nimodipine Inclusion Complexation with α- and β-Cyclodextrin and some Substituted Cyclodextrins

The solubility of nimodipine was measured in aqueous solutions of the following cyclodextrins: -cyclodextrin (-CD), hydroxypropyl--CD (HP--CD), -cyclodextrin (-CD), random substituted methyl--CD (M--CD), three hydroxypropyl--CDs (HP--CD) with mutually different average degree of substitution, and hydroxypropyl--cyclodextrin (HP--CD). From the determined linear solubility diagrams the values of the binding constant K₁₁ of the inclusion complexes of nimodipine with the respective CDs were evaluated. The -CDs efficiently solubilized sparingly soluble nimodipine, the highest value of K₁₁ was found for M--CD (1680 M^-1), followed by -CD (550 M^-1) and HP--CDs, where the higher degree of substitution lowered K₁₁. Only slight solubilization of nimodipine was observed in the solutions of the -CDs and HP--CD.     

Reaction of aminals of conjugated unsaturated ω-dimethylaminoaldehydes with 1,2-, 1,3-, 1,4-, 1,5-, and 1,6-diketones

The condensation of aminals of -dimethylaminoacrolein and 5-dimethylaminopenta-2,4-dienal with cyclic and acyclic 1,2-, 1,3-, 1,4-, 1,5-, and 1,6-diketones was studied. A series of previously unknown bis(,-dimethylaminopolyenyl)diketones was synthesized; their structures were established by means of¹H and¹³C NMR spectroscopies. The electron absorption spectra were employed to study the mutual influence of -aminopolyene chromophores separated by two C=O groups.Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 7, pp. 1235–1241, July, 1993.     

Development of a common 3D pharmacophore for δ-opioid recognition from peptides and non-peptides using a novel computer program

A unified three-dimensional (3D) pharmacophore for recognition of the -opioid receptorby families of structurally diverse -opioid ligands, including peptides and non-peptides,has been determined. An additional structural feature required for -selectivity was alsocharacterized using a subset of these ligands that are highly selective for the -opioidreceptor. To obtain these pharmacophores, we have used a recently developed computerprogram that performs systematic and automated comparisons of molecules to determinewhether any common 3D relationships exist among candidate recognition moieties in high-affinity analogs. All the low-energy conformations of each ligand are included in thesecomparisons. The program developed should be applicable in general to molecular super-imposition problems in rational drug design and to develop both 3D recognition and activationpharmacophores for any receptor for which high- and low-affinity analogs and agonists andantagonists have been identified.     

Studies of the energy spectrum of α, ω- substituted polymethine chains. II. Polymethine chains with odd number of methine groups

The analysis of the experimental data for the energy of the longest wavelength optical transitions _n,opt of substituted polymethines X (CH)_2n+1 X shows that in the asymptotic case (n) _,opt does not tend to zero, as it follows from the empirically established correlations, but has a finite, non-zero value. It is shown that the energy gap of odd polymethines is the same as that of the even polymethines - the polyenes (E 2 eV). The substituents (X N, O, B) are responsible for the appearance of levels in the gap. These, depending on the substituent character, are vacant (X B) or occupied (X N, O). The transition from or to such a level determines the longest wavelength optical transition energy of polymethines.     

Charge-transfer complexes betweenp-toluidine and iodine in solution: A kinetic study

The kinetics of charge-transfer interaction betweenp-toluidine and iodine in methylene chloride was investigated in depth. Thethermal process of formation of theinner complex was found to proceed to an equilibrium. Thephotochemical process follows a different reaction coordinate, going through the formation of an exciplex between the excitedouter complex and the amine ground state. In both cases the same ionic complex (Am ₂I⁺I ₃ ^– , whereAm stands forp-toluidine) was detected as the final product.

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Kinetische Untersuchung der Charge-Transfer-Komplexe zwischenp-Toluidin und Jod

Zusammenfassung Die Kinetik der Charge-Transfer-Wechselwirkung zwischenp-Toluidin und Jod in Methylenchlorid wurde ausführlich untersucht. Derthermische Prozeß, der zur Bildung desinner-Komplexes führt, geht bis zu einem Gleichgewicht. Derphotochemische Prozeß folgt einer unterschiedlichen Reaktionskoordinate und verläuft über die Bildung eines Exziplexes zwischen dem angeregtenouter-Komplex und dem Amin im Grundzustand. In beiden Fällen wurde derselbe ionische Komplex (Am ₂I⁺I ₃ ^– , wobeiAm fürp-Toluidin steht) als Endprodukt festgestellt.

     

Transformed steroids

A preparative method for 9a-hydroxylation of ⁵-3-hydroxysteroids using the fungi ofCircinella sp. 10Kh-1220 not capable of modifying theA ring has been developed. It is established that the yields of the main and the side products greatly depend on the transformation conditions, mycelium age, and the structure of the steroid substrate. Under the optimal transformation conditions novel 9-hydroxysubstituted derivatives of androstenolone, pregnenolone, 16-dehydro-16,17-epoxy-, and-16-methoxypregnenolone have been obtained in 36–80 % yields.Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 4, pp. 737–743, April, 1994.     

Convergent synthesis of 2′,3′-dideoxy-3′-mercapto nucleosides — Potential anti-HIV agents

Summary Methyl 3-benzoylthio-5-O-tert-butyldiphenylsilyl-2,3-dideoxy--D-erythro-pentofuranoside (4) and its corresponding anomer5 were synthesized in four steps from 2-deoxy-D-ribose and used as substrates for the synthesis of nucleosides by condensation with silylated thymidine and N⁶-isobutyryladenine. The nucleosides were deprotected by treatment with Bu₄NF inTHF followed by reaction with MeONa in MeOH to give 3-deoxy-3-mercaptothymidine (8), 2,3-dideoxy-3-mercaptoadenosine (15) and its corresponding anomer16. In the latter reactions it was important to use degassed solvents to minimize formation of the corresponding disulfides of purine nucleosides. Using Bu₄NF, without subsequent reaction with MeONa in the deprotection reaction, resulted in intermolecular transesterification reactions.On leave from Chemistry Department, Faculties of Science and Education, Tanta University, Tanta, Egypt     

Kinetics and mechanism of the hydrolysis of sodium carboxymethylcellulose (Na-CMC) by a cellulase complex

TheSomogyi-Nelson colorimetric method is applied in a new manner more suitable for evaluating the kinetics of the enzyme hydrolysis of sodium carboxymethylcellulose (Na-CMC) catalyzed by the cellulase complex. By means of selective inhibition of a chosen enzyme from the cellulase complex it became possible to trace the effect of the other enzymes included in its composition.

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Kinetik und Mechanismus der Hydrolyse von Natriumcarboxymethylcellulose (Na-CMC) durch einen Cellulase-Komplex

Zusammenfassung Die kolorimetrische Methode nachSomogyi undNelson wird nach einem neuen Verfahren zur Verfolgung der Kinetik der hydrolytischen Spaltung von Natriumcarboxymethylcellulose (Na-CMC), katalysiert durch den Cellulase-Komplex, angewandt. Durch selektive Inhibierung eines bestimmten Enzyms des Cellulase-Komplexes kann man die Wirkung der anderen zu seiner gesamten Zusammensetzung gehörenden Enzyme verfolgen.

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Symbols Used E enzyme (E—cellulase;E—exo-cellobiohydrolase;E—-glucosidase) - [E] _w weight concentration of enzymeE - S substrate (Na-CMC—sodium carboxymethylcellulose) - [S]₀ weight concentration of substrateS - I inhibitor (I—lactose;I—calcium chloride;I—condurrite-B-epoxide) - P product (P—oligosaccharides;P—cellobiose;P—D-glucose) - P end product (K , K , K ) - DP degree of polymerization - DS degree of substitution - ES enzyme-substrate complex (E S, E S, E S) - EP enzyme-product complex (E P, E P) - EI enzyme-inhibitor complex (E I, E I, E I) - M _s molecular mass of substrateS - K _s substrate constant (K _s , K _s , K _s ) - K _I inhibitor constant (K _I , K _I , K _I ) - K _m Michaelis-Menten constant - k ₊₁,k ₊₂ (k ₊₂ ,k ₊₂ ,k ₊₂ ) forward rate constants - k _–1 reverse rate constant - ₀ initial rate of reaction - V maximal reaction rate - A change in absorbance - molar absorption coefficient - wavelength Herrn Prof. Dr.Hans Tuppy zum 60. Geburtstag herzlichst gewidmet.     

2,2′-Diphenyl-Δ3,3′-bi-3H-indole-1,1′-dioxide: Molecular interactions and crystal structure

The Dinitrone 2,2-diphenyl-^3,3-bi-3H-indole-1,1-dioxide acts as a demethylating and dehydrogenating agent. The mechanism of interaction of the dinitrone with donors and acceptors does not involve intermediate charge-transfer complexes probably due to a self association between dinitrone molecules (as supported by X-ray determinations). The crystal structure of the dinitrone was obtained by direct methods;a=9.967 (2),b=19.817 (3),c=10.875 (2) Å, =111.2 (2)°, space group P2₁/n. The finalR andR _w were 0.089 and 0.063 for all measured reflexes.

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2,2-Diphenyl-^3,3-bi-3H-indol-1,1-dioxid: Molekulare Wechselwirkungen und Kristallstruktur

Zusammenfassung Das Dinitron 2,2-Diphenyl-^3,3-bi-3H-indol-1,1-dioxid wirkt als Demethylierungs- und Oxydationsmittel. Die Wechselwirkung des Dinitrons mit Elektronen-Acceptoren und Elektronen-Donatoren geht wegen der Selbstassoziation zwischen den Dinitron-Molekülen ohne die dazwischenliegende Bildung eines Charge-Transfer-Komplexes vor sich; das wird auch von Röntgenstrukturuntersuchungen gestützt. Die Kristallstruktur wurde mit direkten Methoden ermittelt:a=9.967 (2),b=19.817 (3),c=10.875 (2) Å; =111.2 (2)°. P2₁/n. Die endgültigen WerteR undR _w waren 0.089 und 0.063 für alle gemessenen Reflexe.

     

Intercalation of α,ω-Alkanediamines in Layered Aluminium Dihydrogen Triphosphate Dihydrate

Intercalation of ,-alkanediamines, NH₂(CH₂) _n NH₂ (n = 3–10), into layered aluminium dihydrogen triphosphate dihydrate, AlH₂(P₃(O₁₀... 2H₂O, was investigated by XRD, DTA-TG, elemental analysis, and solid-state ³¹P, ¹³C and ²⁷Al NMR. ,-Alkanediamines are intercalated to form a monomolecular layer in the interlayer region, in which the alkanediamines incline at 57 ± 5° to the phosphate layers, whereas n-alkylamines form a bilayer structure with the same inclination angle. Two amino groups in an ,-alkanediamine molecule bridge the layered sheets of phosphates.     

O-Heterocycles by the cyclization of side-chain bromomethoxylated 2′-acetoxychalcones

Summary The title chalcone derivatives react with aqueous sodium hydroxide of various concentrations to form aurones as the major product, together with small amounts of flavones. However, the introduction of 4-nitro or 4-chloro substituents resulted in the formation of flavones as the major product.

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O-Heterocyclen mittels Cyclisierung von an der Seitenkette brommethoxylierten 2-Acetoxychalconen

Zusammenfassung Die im Titel genannten Chalconderivate reagieren mit Natronlauge in verschiedenen Konzentrationen, wobei Aurone zusammen mit geringen Mengen an Flavonen entstehen. Die Einführung von 4-Nitro- oder 4-Chlor-Substituenten führte jedoch zur bevorzugten Bildung von Flavonen.

     

Nitrosation of mefenorex in the presence of cyclodextrins

- and -Cyclodextrin (CD) and heptakis-2,6-di-O-methyl--cyclodextrin (DIMEB) form soluble inclusion compounds with mefenorex (MEF); with -CD a partial inclusion occurs. No solid inclusion compound could be obtained with the four CDs. -, -CD and DIMEB, but not -CD, enhance the nitrosation rate of MEF if the nitrosation assay procedure (NAP test) is applied. During this reaction with - and -CD, solid inclusion compounds of the CDs and nitrosomefenorex (NMEF) precipitate.Part of the Ph.D. thesis of V. Wedelich, Freie Universität Berlin, 1985.     

Quantum-chemical study of allylic compounds with two bonded heavy atoms

It has been shown by the CNDO method that the bathochromic shift of the long-wave absorption band in the transition from allylstannane to compounds of the type C=C-C-Sn-X and C=C-Sn-X (where X is a heavy atom) is connected with the formation of a low-energy vacant *_S-X orbital, localized mainly in the region of the Sn-X chemical bond, and of an occupied _Sn-X orbital, the energy of which is somewhat higher than of the _C-Sn orbital. The dependence of the position of the long-wave absorbance region on conformation is related to the fact that, in planar and nonplanar conformers, the long-wave transitions are of a different type ( * and *, respectively); the bathochromic shift is determined to a large degree by the difference in the energies of the highest occupied MO ( - ) in the s-trans form. In the nonplanar conformers the heavy atom orbitals interact with the -orbital of the ethylene moiety through the bridge group; this leads to a significant delocalization of the HOMO and to a considerable change in its energy. On the other hand, their interaction with the *-orbital in compounds of the C=C-C-Sn-X type is very low and does not favor the delocalization of lower vacant MO. In vinyldistannane the *-orbital is noticeably delocalized, due to the interaction with the *_Sn-Sn orbital in planar and with the *_Sn-Sn orbital in nonplanar conformers.N. D. Zelinskii Institute of Organic Chemistry, Russian Academy of Sciences, 117913 Moscow. Translated from Izvestiya Akademii Nauk, Seriya Khimicheskaya, No. 3, pp. 636–641, March, 1992.     

Zur Chemie des „Dinaphthyldichinhydron”

Dinaphthyldiquinhydrone (4) first obtained byStenhouse andGroves ² reacts as well as 4,4-bi-(1,2-naphthoquinone)¹ with aniline and substituted anilines to give anilinoquinones2 a-h. However, yields of2 are considerable higher if4 is used. The IR-Spectrum of4 is very similar to that of 2,11-dihydroxy-3,10-perylenquinone, therefore we suggest for4 a the structure of a 3,3-dihydroxy-4,4-dioxo-1,1, 4,4-tetrahydro-1,1-binaphthylidene, at least in the solid state.

Herrn Prof. Dr.G. Zigeuner in traditionsverbundener Freundschaft zum 60. Geburtstag gewidmet.     

Selective reduction of the acyl group in cyclic α-acyl-β-dicarbonyl compounds with sodium cyanoborohydride. Efficient synthesis of cyclic α-alkyl-β-dicarbonyl compounds

Efficient synthesis of cyclic -alkyl--dicarbonyl compounds of the cyclopentane, cyclohexane, tetronic acid, and -pyrone series from the corresponding cyclic -acyl--dicarbonyl compounds under the action of NaBH₃(CN) in a THF--HCl system is described.