Synthesis of 4‐fluoroalkyl‐2H‐pyrido [1, 2‐a] pyrimidin‐2‐ones from 2, 2‐dihydropolyfluoroalkanoic acids

In the presence of N, N′‐dicyclohexylcarbodiimide, 2‐aminopyridine and its derivatives (2) condensed with 2, 2‐di‐hydropolyfluoroalkanoic adds (1) to give the corresponding amides. Subsequent intramolecular Micheal addition‐elimination reactions of the fluorine‐containing amides under basic conditions gave 4‐fluoroalkyl‐2H‐pyrido[1,2‐a]pyrimidin‐2‐ones (3) in good yields.     

2‐benzothiazolyl phenacyl sulfoxide,a new precursor for 2‐oxo‐2‐phenylethanethial

Previously, a facile formation of a thioaldehyde by the thermolysis of a heteroaryl phenacyl sulfoxide was confirmed by the detection of a cycloadduct with 2,3‐dimethyl‐1,3‐butadiene. The usefulness of benzothiazolyl phenacyl sulfoxide as a precursor for 2‐oxo‐2‐phenylethanethial was studied under the same conditions in the presence of various dienes and anthracene. In all cases, the Diels‐Alder cycloadducts were formed in moderate to good yields, and the addition of triethylamine as external base was revealed to be effective for carrying out the thermolysis under milder reaction conditions and for the improvement of yields. © 1999 John Wiley & Sons, Inc. Heteroatom Chem 10: 363–367, 1999     

Synthesis of [1,2‐a] benzimidazolo‐1,3,5‐triazin‐2‐thione, [1,2‐a] benzimidazolo‐1,3,5‐thiadiazin‐2‐thione, [1,2‐a] benzimidazolo‐1,3,5‐triazin‐2‐amine,and [1,2‐a] benzimidazol‐2‐yl amidrazone

N‐benzimidazol‐2‐yl imidate type 1 reacts with thiourea, carbon disulfide, cyanamide, and hydrazide to give, respectively, [1,2‐a] benzimidazolo‐1,3,5‐triazin‐2‐thione 2 , [1,2‐a] benzimidazolo‐1,3,5‐thiadiazin‐2‐thione 3 , [1,2‐a] benzimidazolo‐1,3,5‐triazin‐2‐amine 4 , and [1,2‐a] benzimidazol‐2‐yl amidrazone 5 with good yields. Structures elucidation of all newly synthesized heterocyclic compounds was based on the data of IR, ¹H NMR, ¹³C NMR, elemental analysis, and MS of some products. © 2010 Wiley Periodicals, Inc. Heteroatom Chem 21:279–283, 2010; Published online in Wiley InterScience ( www.interscience.wiley.com ). DOI 10.1002/hc.20618     

2‐Hydroxyphenyl 2‐methylpyrazolo[1,5‐a]pyrimidin‐6‐yl ketone

The mol­ecules of the title compound, C₁₄H₁₁N₃O₂, form a three‐dimensional soft hydrogen‐bonded network involving C—H?N hydrogen bonds.     

Methyl 2‐acetamido‐2‐deoxy‐β‐d‐glucopyranoside dihydrate and methyl 2‐formamido‐2‐deoxy‐β‐d‐glucopyranoside

Methyl 2‐acetamido‐2‐deoxy‐β‐d ‐glucopyranoside (β‐GlcNAcOCH₃), (I), crystallizes from water as a dihydrate, C₉H₁₇NO₆·H₂O, containing two independent molecules [denoted (IA) and (IB)] in the asymmetric unit, whereas the crystal structure of methyl 2‐formamido‐2‐deoxy‐β‐d ‐glucopyranoside (β‐GlcNFmOCH₃), (II), C₈H₁₅NO₆, also obtained from water, is devoid of solvent water molecules. The two molecules of (I) assume distorted ⁴C₁ chair conformations. Values of ϕ for (IA) and (IB) indicate ring distortions towards B_C2,C5 and ^C3,O5B, respectively. By comparison, (II) shows considerably more ring distortion than molecules (IA) and (IB), despite the less bulky N‐acyl side chain. Distortion towards B_C2,C5 was observed for (II), similar to the findings for (IA). The amide bond conformation in each of (IA), (IB) and (II) is trans, and the conformation about the C—N bond is anti (C—H is approximately anti to N—H), although the conformation about the latter bond within this group varies by ∼16°. The conformation of the exocyclic hydroxymethyl group was found to be gt in each of (IA), (IB) and (II). Comparison of the X‐ray structures of (I) and (II) with those of other GlcNAc mono‐ and disaccharides shows that GlcNAc aldohexopyranosyl rings can be distorted over a wide range of geometries in the solid state.     

2‐Diazo‐2H‐indoles

2‐Diazo‐2H‐indoles were prepared by diazotization of the corresponding 1H‐indol‐2‐amines and subsequent neutralization. On the basis of NMR data and ab initio and semiempirical calculations, we suggest that the zwitterionic form A is the most representative structure for 2‐diazo‐2H‐indoles. In fact, spectral data are compatible with a 1H‐indole structure, and the fully optimized molecules gave distances in agreement with those reported for the anion obtained from 1H‐indole. The calculated charges are compatible with a zwitterionic structure in which the negative charge is mainly located at the ring N‐atom at variance with the case of diazopyrroles and 3‐diazo‐3H‐indoles where the negative charge is essentially located on the ipso C‐atom.     

A New 2H‐Azirin‐3‐amine as a Synthon for 2‐Methylaspartate

The synthesis of a novel 2,2‐disubstituted 2H‐azirin‐3‐amine 3a as a building block for racemic Asp(2Me) is described. This synthon contains an ester group in the side chain. The reaction of 3a with thiobenzoic acid and the amino acid Z‐Val‐OH yielded the racemic monothiodiamide 10a and the dipeptide 11 as a mixture of diastereoisomers, respectively (Scheme 2). In 11 , each of the protecting groups was removed selectively (Scheme 3). First attempts toward the preparation of enantiomerically pure synthons for Asp(2Me) with a chiral auxiliary group in the side chain are described. Synthons 3b with a 1‐(naphthalen‐1‐yl)ethyl ester group and 3c with a menthyl ester group were prepared and reacted with thiobenzoic acid to form monothiodiamides 10b and 10c (Scheme 2). However, the diastereoisomers of the synthons 3b and 3c could not be separated by chromatography.     

Microwave‐assisted from synthesis of 2‐arylamino‐2‐imidazolines on a solid support

An efficient synthesis of 2‐arylamino‐2‐imidazolines from dimethyl N‐aryldithioimidocarbonates and ethylenediamine on solid support under microwave irradiation has been developed. The reaction time has been reduced from hours to minutes with improved yields as compared to conventional heating. Their piperidin‐4‐ylmethyl and morpholin‐4‐ylmethyl derivatives were synthesized by treatment with formaldehyde and piperidine or morpholine. © 2005 Wiley Periodicals, Inc. Heteroatom Chem 16:142–222, 2005; Published online in Wiley InterScience ( www.interscience.wiley.com ). DOI 10.1002/hc.20081     

Synthesis of 2‐amino‐s‐triazino[1,2‐a]benzimidazoles as potential antifolates from 2‐guanidino‐ and 2‐guanidino‐5‐methylbenzimidazoles

The syntheses of 2‐amino‐s‐triazino[1,2‐a]benzimidazoles from 2‐guanidinobenzimidazoles were successfully carried out by a ring annelation reaction. The regiochemistry of the ring closure of 5‐methyl‐2‐guanidinobenzimidazole with diethyl azodicarboxylate, aldehydes, acetone, diethyl ethoxymethylenemalonate and orthoesters, leading to the formation of s‐triazine ring was studied. High regioselectivity was not observed in any of these reactions. However, the synthesis of s‐triazino[1,2‐a]benzimidazole system was found to be more regioselective than its 3,4‐dihydro analogue. NOESY experiment indicated that the compound, 2‐amino‐4,4‐dimethyl‐3,4‐dihydro‐s‐triazino[1,2‐a]benzimidazole existed predominantly as the 3,4‐dihydro tautomer in dimethyl sulfoxide. It was found to inhibit bovine dihydrofolate reductase with IC₅₀ 10.9 μM.     

2‐Allenyl‐2H‐benzotriazole

In the title compound, C₉H₇N₃, the allenyl form of the side chain (–CH=C=CH₂) is found in preference to the propargyl form (–CH₂—C[triple‐bond]CH). The bond distances between the C atoms in the side chain are 1.303 (3) and 1.289 (3) Å.     

2‐(2‐Pyridyl­imino)‐2H‐1,2,4‐thia­diazo­lo­[2,3‐a]­pyridine

The title compound, C₁₁H₈N₄S, is found to have a symmetrical resonance structure in which both pyridyl‐N atoms interact with the S atom forming hemi‐bonds. This also results in the formation of a delocalized di­imine region and disturbance of the aromaticity in the pyridyl rings.     

2‐(2‐Oxoimidazolidinyl)ethyl 2‐methyl­prop‐2‐enoate

In the crystal structure of the title compound, C₉H₁₄N₂O₃, the molecules are linked by N—H?O=C bonds into chains parallel to [001]. Large crystals are readily obtained, presumably because of the hydrogen bonds and an energetically stable conformation of the mol­ecule.     

(2E)‐N‐(2‐Iodo‐4,6‐dimethylphenyl)‐2‐methylbut‐2‐enamide

The title compound, C₁₄H₁₈INO, crystallizes as +sc/+sp/+sc 2‐iodoanilide molecules (and racemic opposites) and shows significant intermolecular I...O interactions in the solid state, forming dimeric pairs about centres of symmetry. Under asymmetric Heck conditions, the S enantiomer of the dihydroindol‐2‐one was obtained using (R)‐(+)‐2,2′‐bis(diphenylphosphino)‐1,1′‐binaphthyl [(R)‐BINAP], suggesting a mechanism that proceeds by oxidative addition to give the title (P) enantiomer of the compound and pro‐S coordination of the Re face of the alkene in a conformation similar to that defined crystallographically, except that rotation about the C—C bond of the butenyl group is required.     

Photocycloaddition of Cyclohex‐2‐enones to 2‐Alkylprop‐2‐enenitriles

The outcome of the photocycloaddition of cyclohex‐2‐enones to 2‐alkylprop‐2‐enenitriles differs basically from that of the corresponding 2‐alkylbut‐1‐en‐3‐ynes. While the latter afford mainly products resulting from 1,6‐cyclization of the intermediate triplet alkyl‐(prop‐2‐ynyl) 1,4‐biradical, the former give only cyclobutanecarbonitriles resulting from 1,4‐cyclization of the singlet alkyl‐cyanoalkyl 1,4‐biradical.     

4‐Benzoyl‐3,4‐dihydro‐2H‐1,4‐benzoxazine‐2‐carbonitrile: refinement using a multipolar atom model

The structural model for the title compound, C₁₆H₁₂N₂O₂, was refined using a multipolar atom model transferred from an experimental electron‐density database. The refinement showed some improvements of crystallographic statistical indices when compared with a conventional spherical neutral‐atom refinement. The title compound adopts a half‐chair conformation. The amide N atom lies almost in the plane defined by the three neighbouring C atoms. In the crystal structure, molecules are linked by weak intermolecular C—H...O and C—H...π hydrogen bonds.     

Methyl 2,3‐dideoxy‐2‐S‐methylmercurio‐2‐thio‐β‐d‐manno‐oct‐2‐ulo­pyranosonate‐(2,6)

The hexo­pyran­osyl ring of the title compound, [Hg(CH₃)(C₉H₁₅O₇S)], adopts the ⁴C₁ chair conformation, and the anomeric configuration of the thio­methyl­mercury linkage is β. The compound exists as two symmetry‐independent conformers, A and B, within the unit cell, and each shows an almost linear S—Hg—C arrangement. Most of the bond distances and angles in A and B are similar, although a marked difference exists in the side‐chain conformation. Weak secondary intramolecular (between Hg and ring O) and intermolecular (between A and B conformers) interactions are documented.     

Nucleosides XIII. Facile Synthesis of 4‐Amino‐1‐(2‐deoxy‐β‐D‐ribofuranosyl)quinazolin‐2‐one as a 2′‐Deoxycytidine Analog for Oligonucleotide Synthesis

4‐Amino‐1‐(2‐deoxy‐β‐D‐ribofuranosyl)quinazolin‐2‐one (4) was prepared by Barton deoxygenation from 4‐amino‐1‐(β‐D‐ribofuranosyl)quinazolin‐2‐one (3) as a 2′‐deoxycytidine analog.     

2‐Amino‐8‐(2‐deoxy‐2‐fluoro‐β‐D‐arabinofuranosyl)imidazo[1,2‐a]‐1,3,5‐triazin‐4(8H)‐one: Synthesis and Conformation of a 5‐Aza‐7‐deazaguanine Fluoronucleoside

Nucleobase‐anion glycosylation of 2‐[(2‐methyl‐1‐oxopropyl)amino]imidazo[1,2‐a]‐1,3,5‐triazin‐4(8H)‐one ( 6 ) with 3,5‐di‐O‐benzoyl‐2‐deoxy‐2‐fluoro‐α‐D ‐arabinofuranosyl bromide ( 8 ) furnishes a mixture of the benzoyl‐protected anomeric 2‐amino‐8‐(2‐deoxy‐2‐fluoro‐D ‐arabinofuranosyl)imidazo[1,2‐a]‐1,3,5‐triazin‐4(8H)‐ones 9 / 10 in a ratio of ca. 1 : 1. After deprotection, the inseparable anomeric mixture 3 / 4 was silylated. The obtained 5‐O‐[(1,1‐dimethylethyl)diphenylsilyl] derivatives 11 and 12 were separated and desilylated affording the nucleoside 3 and its α‐D anomer 4 . Similar to 2′‐deoxy‐2′‐fluoroarabinoguanosine, the conformation of the sugar moiety is shifted from S towards N by the fluoro substituent in arabino configuration.     

2‐Amino‐8‐(2‐deoxy‐2‐fluoro‐β‐d‐arabinofuranosyl)imidazo[1,2‐a][1,3,5]triazin‐4(8H)‐one monohydrate,a 2′‐deoxyguanosine analogue with an altered Watson–Crick recognition site

The title compound, C₁₀H₁₂FN₅O₄·H₂O, shows an anti glycosyl orientation [χ = −123.1 (2)°]. The 2‐deoxy‐2‐fluoroarabinofuranosyl moiety exhibits a major C2′‐endo sugar puckering (S‐type, C2′‐endo–C1′‐exo, ²T₁), with P = 156.9 (2)° and τ_m = 36.8 (1)°, while in solution a predominantly N conformation of the sugar moiety is observed. The conformation around the exocyclic C4′—C5′ bond is −sc (trans, gauche), with γ = −78.3 (2)°. Both nucleoside and solvent molecules participate in the formation of a three‐dimensional hydrogen‐bonding pattern via intermolecular N—H...O and O—H...O hydrogen bonds; the N atoms of the heterocyclic moiety and the F substituent do not take part in hydrogen bonding.