Distribution of distances in donor-acceptor pairs of cyanine dyes upon electronic excitation energy transfer in the presence of DNA

Electronic excitation energy transfer (EEET) between molecules of carbocyanine dyes, which form noncovalent complexes with DNA, has been studied by picosecond spectroscopy. Three oxacarbocyanine dyes have been used as electronic excitation energy donors, and 3,3′-diethylthiacarbocyanine iodide has served as an acceptor dye. An analysis of the kinetic dependences permitted obtaining the data on distribution of the distances in donor-acceptor pairs upon EEET. The effect of the acceptor concentration on the parameters of distribution of its molecules in the quenching microphase has been revealed.     

Electron and energy transfer in donor-acceptor systems with conjugated molecular bridges

Electron and energy transfer reactions in covalently connected donor-bridge-acceptor assemblies are strongly dependent, not only on the donor-acceptor distance, but also on the electronic structure of the bridge. In this article we describe some well characterised systems where the bridges are pi-conjugated chromophores, and where, specifically, the interplay between bridge length and energy plays an important role for the donor-acceptor electronic coupling. For any application that relies on the transport of electrons, for example molecule based solar cells or molecular scale electronics, it will be imperative to predict the electron transfer capabilities of different molecular structures. The potential difficulties with making such predictions and the lack of suitable models are also discussed.     

Effect of the functionalization of the axial phthalocyanine ligands on the energy transfer in QD-based donor-acceptor pairs.

This study examines the electronic coupling between quantum dots (QDs) and molecules on their surfaces as a function of the modality of their interaction. As a probe, the energy transfer (ET) between CdSe QDs and phthalocyanines (Pcs) was monitored and evaluated with regard to the functionalization of the axial phthalocyanine ligand, bulkiness of the functional group bridging the QD donor and Pc acceptor, and the number of the functionalized axial ligands. New silicon PCs and their conjugates with CdSe QDs were synthesized. The ET efficiency and kinetics were studied by steady state and femtosecond time-resolved absorption spectroscopy. We observed a decrease in ET efficiency with the increase in functional group bulkiness, which could be explained by increasing steric hindrance between the ET pair. In addition, a higher ET efficiency was observed for amino and thiol functionalized Pcs compared to Pcs without functional group on the axial alkyl chain.     

Informative secondary chiroptics in binary molecular organogel systems for donor-acceptor energy transfer

Pyrene-doped l-glutamide-based lipidic derivatives with different alkyl lengths (C_n-g-Pyr; n = 4, 8 and 12) were newly synthesized. All of the C_n-g-Pyr dissolved and showed thermotopically and lyotropically-induced excimer formations accompanied by induction of the positive Cotton effect in their CD spectra, indicating chirally ordered stacking. However, when C₄-g-Pyr and C₁₂-g-Pyr were mixed in a certain molar ratio, an unusual CD pattern from positive to negative ones was observed. In this study, energy transfer efficiency was investigated in a binary system of C_n-g-Pyr with C₁₂-g-TPP. The results revealed that simple modification of the alkyl length of C_n-g-Pyr enables enhancement of the energy transfer efficiency with C₁₂-g-TPP.     

Tuning energy transfer in switchable donor-acceptor systems

The synthesis and characterisation of a coumarin-dithienylcyclopentene-coumarin symmetric triad (CSC) and a perylene bisimide-dithienylcyclopentene-coumarin asymmetric triad (PSC) are reported. In both triads the switching function of the photochromic dithienylcyclopentene unit is retained. For CSC an overall 50% quenching of the coumarin fluorescence is observed upon ring-closure of the dithienylcyclopentene component, which, taken together with the low PSS (<70%), indicates that energy transfer quenching of the coumarin component by the dithienylcyclopentene in the closed state is efficient. Upon ring opening of the dithienylcyclopentene unit the coumarin emission is restored fully. The PSC triad shows efficient energy transfer from the coumarin to the perylene bisimide unit when the dithienylcyclopentene unit is in the open state. When the dithienylcyclopentene is in the closed (PSS) state a 60% decrease in sensitized perylene bisimide emission intensity is observed due to competitive quenching of the coumarin excited state and partial quenching of the perylene excited state by the closed dithienylcyclopentene unit. This modulation of energy transfer is reversible over several cycles for both the symmetric and asymmetric tri-component systems.     

Internal reorganization energy in return electron transfer within geminate radical ion pairs

The internal reorganization energies λ_v for return electron transfer (ET) reactions within geminate radical ion pairs were studied using the extended Nelsen method. In the ET systems studied, the common acceptor was 9,10-dicyanoanthracene (DCA). The donors were methyl-substituted compounds of benzene, biphenyl, naphthalene and phenanthrene. The calculated results indicated that the λ_v values were associated mainly with the carbon atoms of the aromatic rings and the atoms linked directly to the aromatic rings. Systems with similar substituted conditions are expected to have similar internal reorganization energies. For systems in which the two aromatic rings of the donor can rotate relative to each other, the calculated λ_v values include a contribution from the change in torsional angle in the ET process. Compared with the system in which the donor is a fluorene molecule, the contributions of the torsional angles (low-frequency vibration) to λ_v were estimated.     

Photoinduced intramolecular electron transfer reactions within donor-acceptor linked compounds in solution and within donor-acceptor ion-pairs in crystal

Intramolecular electron transfer (ET) processes within donor-acceptor linked compounds in solution and donor-acceptor ion-pairs in crystal have been investigated by means of laser photolysis kinetic spectroscopy. An excited Ru(II)-moiety of donor-acceptor compounds undergoes intramolecular electron-transfer to either ruthenium(III) ion, rhodium(III) ion or a cobalt(III) ion, followed by back ET to regenerate the original reactant. An Arrhenius plot of the ET rate gave a straight line with an intercept (frequency factor) and a slope (activation energy) for the photoinduced ET and the back ET. Mixed-valence isomer states produced via photoinitiated ET rapidly decayed via back ET. A common and large frequency factor observed for Ru(II)-Rh(III) compounds is accounted for in terms of solvent-relaxation dynamics. For the back ET in the Ru(II)-Co(III) compounds, the frequency factors are reduced because of negative entropy change. ET within donor-acceptor ion-pair of Ru(bpy)₂³ and Co(CN)₃⁶ in crystal took place very rapidly compared with in water.     

Materials for fluorescence resonance energy transfer analysis: beyond traditional donor-acceptor combinations

The use of F?rster or fluorescence resonance energy transfer (FRET) as a spectroscopic technique has been in practice for over 50 years. A search of ISI Web of Science with just the acronym "FRET" returns more than 2300 citations from various areas such as structural elucidation of biological molecules and their interactions, in vitro assays, in vivo monitoring in cellular research, nucleic acid analysis, signal transduction, light harvesting and metallic nanomaterials. The advent of new classes of fluorophores including nanocrystals, nanoparticles, polymers, and genetically encoded proteins, in conjunction with ever more sophisticated equipment, has been vital in this development. This review gives a critical overview of the major classes of fluorophore materials that may act as donor, acceptor, or both in a FRET configuration. We focus in particular on the benefits and limitations of these materials and their combinations, as well as the available methods of bioconjugation.     

Ultrafast photoinduced electron transfer within a self-assembled donor-acceptor system

A photoactive supramolecular assembly that is based on the hydrogen-bonded system H1.G2, consisting of a methyl viologen-functionalized barbiturate host (H1) (1-(N-(3,5-bis[[(6-tert-butylacetylamino-2-pyridyl)amino]carbonyl])-phenylacetamide)-1'-methyl-4,4'-bipyridium) and a [Re(Br)(CO)3(barbi-bpy)] (barbi-bpy = 5-[4-(4'-methyl)-2,2'-bipyridyl]methyl-2,4,6-(1H,3H,5H)-pyrimidinetrione) complex as the guest (G2) is described. The host molecule contains a well-known electron accepting group (methyl viologen), whereas the guest system can act as an efficient electron donor in the excited state. Upon self-assembly, the resulting adduct (H1.G2) represents an interesting noncovalently linked donor-acceptor system. The H1.G2 complex has been characterized in acetonitrile-d3 using 1H NMR and diffusion-ordered NMR spectroscopy (DOSY). The photophysical properties of the components and of the assembly have been studied in dichloromethane, in which the assembly has a high binding constant (Kass > or = 2 x 10(5) M(-1)), using time-resolved fluorescence and transient absorption spectroscopy. A detailed investigation of the hydrogen-bonded complex H1.G2 revealed that, upon excitation of the rhenium compound G2, an ultrafast electron-transfer process occurs from the metal-based component to the acceptor unit. The kinetics of the forward and back electron-transfer processes have been determined.     

Excited-state proton-coupled electron transfer within ion pairs

The use of light to drive proton-coupled electron transfer (PCET) reactions has received growing interest, with recent focus on the direct use of excited states in PCET reactions (ES-PCET). Electrostatic ion pairs provide a scaffold to reduce reaction orders and have facilitated many discoveries in electron-transfer chemistry. Their use, however, has not translated to PCET. Herein, we show that ion pairs, formed solely through electrostatic interactions, provide a general, facile means to study an ES-PCET mechanism. These ion pairs formed readily between salicylate anions and tetracationic ruthenium complexes in acetonitrile solution. Upon light excitation, quenching of the ruthenium excited state occurred through ES-PCET oxidation of salicylate within the ion pair. Transient absorption spectroscopy identified the reduced ruthenium complex and oxidized salicylate radical as the primary photoproducts of this reaction. The reduced reaction order due to ion pairing allowed the first-order PCET rate constants to be directly measured through nanosecond photoluminescence spectroscopy. These PCET rate constants saturated at larger driving forces consistent with approaching the Marcus barrierless region. Surprisingly, a proton-transfer tautomer of salicylate, with the proton localized on the carboxylate functional group, was present in acetonitrile. A pre-equilibrium model based on this tautomerization provided non-adiabatic electron-transfer rate constants that were well described by Marcus theory. Electrostatic ion pairs were critical to our ability to investigate this PCET mechanism without the need to covalently link the donor and acceptor or introduce specific hydrogen bonding sites that could compete in alternate PCET pathways.

Electrostatic ion pairs provide a general method to study excited-state proton-coupled electron transfer. A PT_aET_b mechanism is identified for the ES-PCET oxidation of salicylate within photoexcited cationic ruthenium–salicylate ion pairs.     

Intrachain energy transfer in silylene-spaced alternating donor-acceptor divinylarene copolymers

Silylene-spaced donor-acceptor divinylarene copolymers are synthesized by hydrosilylation of bisalkynes 7 with bisvinylsilanes 3; efficient intrachain energy transfer between donor-acceptor chromophores is observed.     

Probing molecular wires: synthesis, structural, and electronic study of donor-acceptor assemblies exhibiting long-range electron transfer

A series of donor-acceptor arrays (C60-oligo-PPV-exTTF; 16-20) incorporating pi-conjugated oligo(phenylenevinylene) wires (oligo-PPV) of different length between pi-extended tetrathiafulvalene (exTTF) as electron donor and C60 as electron acceptor has been prepared by multistep convergent synthetic approaches. The electronic interactions between the three electroactive species present in 16-20 were investigated by UV-visible spectroscopy and cyclic voltammetry (CV). Our studies clearly show that, although the C60 units are connected to the exTTF donors through a pi-conjugated oligo-PPV framework, no significant electronic interactions are observed in the ground state. Interestingly, photoinduced electron-transfer processes over distances of up to 50 Angstroms afford highly stabilized radical ion pairs. The measured lifetimes for the photogenerated charge-separated states are in the range of hundreds of nanoseconds (approximately 500 ns) in benzonitrile, regardless of the oligomer length (i.e., from the monomer to the pentamer). A different lifetime (4.35 micros) is observed for the heptamer-containing array. This difference in lifetime has been accounted for by the loss of planarity of the oPPV moiety that increases with the wire length, as established by semi-empirical (PM3) theoretical calculations carried out with 19 and 20. The charge recombination dynamics reveal a very low attenuation factor (beta = 0.01 +/- 0.005 Angstroms(-1)). This beta value, as well as the strong electron coupling (V approximately 5.5 cm(-1)) between the donor and the acceptor units, clearly reveals a nanowire behavior for the pi-conjugated oligomer, which paves the way for applications in nanotechnology.     

Concatenation of reversible electronic energy transfer and photoinduced electron transfer to control a molecular piston

Reversible electronic energy transfer and photoinduced electron transfer conspire in the light-driven dethreading of a molecular piston, showing the potential of combining these processes in supramolecular systems.     

Artificial light-harvesting antennae: electronic energy transfer by way of molecular funnels

Electronic energy transfer (EET) plays a critical role in many biological processes and is used by nature to direct energy to a site where chemical reactions need to be initiated. Such EET can occur over large distances and can involve many individual molecules of identical, similar or disparate chemical identity. Advances in spectroscopy and data processing have allowed the rates of EET to be measured on extremely fast timescales such that improved mechanistic insight becomes feasible. At the same time, highly sophisticated synthetic operations have been devised that facilitate the isolation and purification of elaborate multi-component molecular arrays. A key feature of these arrays concerns the logical positioning of individual units in a way that favours directed EET along the molecular axis or along some other preferred pathway. The availability of these novel molecular materials allows close examination of popular theoretical models and paves the way for the development of advanced molecular sensors, artificial light harvesters, fluorescent labels and sensitizers. Of particular interest is the spectacular growth in the application of boron dipyrromethene dyes as basic reagents in such artificial photon collectors and these compounds have dominated the market in recent years because of their synthetic versatility and valuable photophysical properties. In this article, recent developments in the field are highlighted in terms of synthesis and subsequent spectroscopic exploration.     

Dynamics of photoinduced electron transfer in a molecular donor-acceptor quartet

The electronic structures and dynamics of photoinduced charge separation and recombination in a new donor/acceptor quartet molecule with bis-oligothiophene (BOTH) and bis-perylenediimide (BPDI) blocks attached to a benzene ring were described. Detailed transient spectroscopic studies were carried out on this compound and reference compounds at isolated molecular levels in solution. Two different dynamics of charge separation and recombination associated with two types of donor/acceptor pair conformations in solution were observed. These results were discussed based on Marcus theory and ascribed to both through-bond and through-space electron-transfer processes associated with two different orientations of the acceptors relative to the donor group. This molecular system exhibits a more efficient charge separation than charge recombination processes in both polar and nonpolar organic solvents, indicating that the material is an interesting candidate for photovoltaic studies in solid state.     

Electron transfer within self-assembling cyclic tetramers using chlorophyll-based donor-acceptor building blocks

The synthesis and photoinduced charge transfer properties of a series of Chl-based donor-acceptor triad building blocks that self-assemble into cyclic tetramers are reported. Chlorophyll a was converted into zinc methyl 3-ethylpyrochlorophyllide a (Chl) and then further modified at its 20-position to covalently attach a pyromellitimide (PI) acceptor bearing a pyridine ligand and one or two naphthalene-1,8:4,5-bis(dicarboximide) (NDI) secondary electron acceptors to give Chl-PI-NDI and Chl-PI-NDI(2). The pyridine ligand within each ambident triad enables intermolecular Chl metal-ligand coordination in dry toluene, which results in the formation of cyclic tetramers in solution, as determined using small- and wide-angle X-ray scattering at a synchrotron source. Femtosecond and nanosecond transient absorption spectroscopy of the monomers in toluene-1% pyridine and the cyclic tetramers in toluene shows that the selective photoexcitation of Chl results in intramolecular electron transfer from (1*)Chl to PI to form Chl(+?)-PI(-?)-NDI and Chl(+?)-PI(-?)-NDI(2). This initial charge separation is followed by a rapid charge shift from PI(-?) to NDI and subsequent charge recombination of Chl(+?)-PI-NDI(-?) and Chl(+?)-PI-(NDI)NDI(-?) on a 5-30 ns time scale. Charge recombination in the Chl-PI-NDI(2) cyclic tetramer (τ(CR) = 30 ± 1 ns in toluene) is slower by a factor of 3 relative to the monomeric building blocks (τ(CR) = 10 ± 1 ns in toluene-1% pyridine). This indicates that the self-assembly of these building blocks into the cyclic tetramers alters their structures in a way that lengthens their charge separation lifetimes, which is an advantageous strategy for artificial photosynthetic systems.     

Ground-state degeneracy and slip energy in fractional-valency donor-acceptor molecular crystals

Slip energies have been calculated as the differences of the Madelung energies for Wigner lattices with identical values for the ionic valences for highly conducting TTF-TCNQ and NMP-TCNQ donor-acceptor molecular crystals in the region of the observed ionic valences. It is found that these energies are small, i.e., there are degenerate Wigner structures, which allow the occurrence of specific electronic excitations (kinks) responsible for the high electronic conductivities of molecular crystals with fractional valences.Translated from Teoreticheskaya i Éksperimental'naya Khimiya, Vol. 22, No. 4, pp. 464–469, July–August, 1986.     

Phonon-mediated path-interference in electronic energy transfer

We present a formalism to quantify the contribution of path-interference in phonon-mediated electronic energy transfer. The transfer rate between two molecules is computed by considering the quantum mechanical amplitudes associated with pathways connecting the initial and final sites. This includes contributions from classical pathways, but also terms arising from interference of different pathways. We treat the vibrational modes coupled to the molecules as a non-Markovian harmonic oscillator bath, and investigate the correction to transfer rates due to the lowest-order interference contribution. We show that depending on the structure of the harmonic bath, the correction due to path-interference may have a dominant vibrational or electronic character, and can make a notable contribution to the transfer rate in the steady state.