Insertion of 5-methyl-N-(1-pyrenylmethyl)cytidine into DNA. Duplex, three-way junction and triplex stabilities

5′-O-(4,4′-dimethoxytrityl)-5-methyl-N⁴-(1-pyrenylmethyl)cytidine(5) was prepared by reaction of 1-pyrenylmethylamine with an appropriate protected 4-(1,2,4-triazolyl)thymidine derivative which was synthesized from 5-O-DMT protected thymidine by acetylation with acetic anhydride and subsequent reaction with triethylamine, 1,2,4-triazole and POCl₃. Stabilities are reported for DNA duplexes, three-way junctions and triplexes when 5 is inserted. Most interestingly, the three-way junctions are stabilized when 5 is used for insertion into the junction region. This break-through for recognizing the foot of a stem could have far-reaching importance because new targets for antisense oligos is now rendered possible on intact secondary structures.     

3-exo,3′-exo-(1R,1′R)-Bithiocamphor — a versatile source for functionally different 3,3′-bibornane derivatives, II. 1 An access to 3-exo,3′-exo-(1r,1′r)-bicamphor and related compounds

3-exo,3′-exo-(1R,1′R)-bicamphor (12) is obtained from 3-exo,3′-exo-(1R,1′R)-bithtiocamphor (3) by condensation with hydrazine hydrate followed by hydrolysis of the resulting dihydropyridazine 11. Deprotonation of 12 with NaH and subsequent treatment with potassium hexacyanoferrate (III) furnishes the 2,2′-dioxo-3,3′-bibornanylidene 13, whilst reduction of 12 with L1AlH₄ affords the 3,3′-biisoborneol 16. Further related transformations to various 2,2′-difunctional 3,3′-bibornane derivatives are described, which are could be of interest as chiral ligands     

Synthesis, spectra and crystal structures of two Ru complexes with polypyridyl ligands: cis-[Ru(bpy)2(4,4′-bpy)Cl](PF6)·H2O and cis-[Ru(phen)2(CH3CN)2](PF6)2

Two mononuclear Ru^II complexes of polypyridyl ligands, cis-[Ru(bpy)₂(4,4′-bpy)Cl](PF₆)·H₂O (1) and cis-[Ru(phen)₂(CH₃CN)₂](PF₆)₂ (2) (bpy=2,2′-bipyridyl, 4,4′-bpy=4,4′-bipyridyl, and PHEN=1,10-phenanthroline), have been synthesized and characterized by elemental analyses, IR and UV–vis spectra. The crystal structures of both complexes have been determined by X-ray diffraction, indicating that each Ru^II center is hexa-coordinated (RuN₅Cl for 1 and RuN₆ for 2) and takes a distorted octahedral geometry. The favored feature of both complexes is that they are quite useful complex precursors for further constructing new functional architectures.     

Oligoribonucleotide synthesis by the use of 1-(2-cyanoethoxy)ethyl (CEE) as a 2′-hydroxy protecting group

A novel method for the synthesis of oligoribonucleotides using 1-(2-cyanoethoxy)ethyl (CEE) as a 2′-hydroxy protecting group has been developed. A CEE group was introduced to the 2′-position of N-acyl-3′,5′-O-silyl-protected ribonucleosides under acidic conditions in good yields. The 2′-O-CEE group was found to be stable in an aqueous or ethanolic ammonia and was quickly removed by treatment with anhydrous tetrabutylammonium fluoride (TBAF). A combination of the use of N-acyl and 2′-O-CEE protecting groups enabled a reliable and complete two-step deprotection, first with NH₃–EtOH, then with TBAF in THF, without cleavage of internucleotidic linkages.     

Unusual cytotoxic sulfated cadinene-type sesquiterpene glycosides from cottonseed (Gossypium hirsutum)

Two new sulfated cadinene-type sesquiterpene glycosides, 13-hydroxy-7-O-(6′-O-sulfate-β-d-glucopyranosyl)-desoxyhemigossypol (1) and 13,15-dihydroxy-7-O-(6′-O-sulfate-β-d-glucopyranosyl)-desoxyhemigossypol (2), have been isolated from whole cottonseed (Gossypium hirsutum). Their structures, which possess an unusual 6-O-sulfate-glucopyranosyl moiety, were determined through the interpretation of 2D NMR spectral data and H/D exchange ESI-MS experiments. Compounds 1 and 2 were screened for their toxicity on Jurkat cells. Both compounds inhibited cellular proliferation with IC₅₀ values of 8.1 and 4.2 μg, respectively.     

An unexpected [2+2]-cycloaddition reaction of 4-methyldithieno-[3,4-b:3′,2′-d]pyridinium iodide with dimethyl acetylenedicarboxylate

An unexpected [2+2]-cycloaddition occured in the reaction of 4-methyldithieno-[3,4-6:3′,2′-d]pyridinium iodide (3)with two equivalents of DMAD, giving 4-(trans-1,2-dicarbomethoxy-2- iodovinyl)-5-methyl-6,7-dicarbomethoxy-4,5-dihydrothieno [23-c]quinoline (4) in 54% yield. 4 is formed via 4-methyl-5-(trans-1,2-dicarbomethoxy-2-iodo-4,5-dihydrothieno [3,4-b:3′,2′-d]pyridine (16), followed by [2+2]-cycloaddition. The primary adduct rearranges via a thiepin to an episulfide which eliminates sulfur to give 4.     

Synthesis of 1,1′-methylenedi[(1R,1′R,3R,3′R,5R,5′R)-8-oxabicyclo[3.2.1]oct-6-en-3-ol] and derivatives: precursors of long-chain polyketides

Racemic 1,1′-methylene[(1RS,1′RS,3RS,3′RS,5RS,5′RS)-8-oxabicyclo[3.2.1]oct-6-en-3-ol] ((±)-6) derived from 2,2′-methylenedifuran has been resolved kinetically with Candida cyclindracea lipase-catalysed transesterification giving 1,1′-methylenedi[(1R,1′R,3R,3′R,5R,5′R)-8-oxabicyclo[3.2.1]oct-6-en-3-ol] (−)-6 (30% yield, 98% ee) and 1,1′-methylenedi[(1S,1′S,3S,3′S,5S,5′S)-8-oxabicyclo[3.2.1]oct-6-en-3-yl] diacetate (+)-8, (40% yield, 98% ee). These compounds have been converted into 1,1′-methylenedi[(4S,4′S,6S,6′S)- and (4R,4′R,6R,6′R)-cyclohept-1-en-4,6-diyl] derivatives.     

Preliminary studies on the synthesis of rancinamycins from nitrosugars: first total synthesis of (3S,4S,5S,6R)-5-benzyloxy-6-hydroxy-3,4-(isopropylidendioxy)-cyclohex-1-enecarbaldehyde

The first total synthesis of (3S,4S,5S,6R)-5-benzyloxy-6-hydroxy-3,4-(isopropylidendioxy)-cyclohex-1-enecarbaldehyde from d-glucose is described. The key steps of this synthesis are the stereoselective Michael addition of 2-lithio-1,3-dithiane to 3-O-benzyl-5,6-dideoxy-1,2-O-isopropylidene-6-nitro--d-xilo-hex-5-enofuranose followed by the enantioselective two-step transformation of 3-O-benzyl-5,6-dideoxy-5-C-(1,3-dithian-2-yl)-6-nitro-β-l-idofuranose into (1S,2S,3S,4S,5S,6R)-5-benzyloxy-6-hydroxy-3,4-(isopropylidendioxy)-2-nitro-cyclohexanecarbaldehyde propylene dithioacetal, which was finally converted into the target compound.     

A rapid efficient microwave-assisted synthesis of a 3′,5′-pentathymidine by copper(I)-catalyzed [3+2] cycloaddition

Starting from 5′-O-tosylthymidine, sequential azidation and Cu-catalyzed [3+2] azide–alkyne 1,3-dipolar cycloaddition led to the formation of a 3′,5′-pentathymidine in high yield. The whole process needed only work-up/precipitation steps and was completed within just 18 min, thanks to microwave activation.     

Structural, spectral and thermal studies of N-2-(4-picolyl)- and N-2-(6-picolyl)-N′-(2-chlorophenyl)thioureas and N-2-(6-picolyl)-N′-(2-bromophenyl)thiourea

N-2-(4-picolyl)-N′-2-chlorophenylthiourea, 4PicTu2Cl, monoclinic, P2₁/c, a=10.068(5), b=11.715(2), β=96.88(4)°, and Z=4; N-2-(6-picolyl)-N′-2-chlorophenylthiourea, 6PicTu2Cl, triclinic, P-1, a=7.4250(8), b=7.5690(16), c=12.664(3) Å, =105.706(17), β=103.181(13), γ=90.063(13)°, V=665.6(2) ų and Z=2 and N-2-(6-picolyl)-N′-2-bromophenylthiourea, 6PicTu2Br, triclinic, P-1, a=7.512(4), b=7.535(6), c=12.575(4) Å, a=103.14(3), β=105.67(3), γ=90.28(4)°, V=665.7(2) ų and Z=2. The intramolecular hydrogen bonding between N′H and the pyridine nitrogen and intermolecular hydrogen bonding involving the thione sulfur and the NH hydrogen, as well as the planarity of the molecules, are affected by the position of the methyl substituent on the pyridine ring. The enthalpies of fusion and melting points of these thioureas are also affected. ¹H NMR studies in CDCl₃ show the NH′ hydrogen resonance considerably downfield from other resonances in their spectra.     

Photophysics of 6-(2′-hydroxy-4′-methoxyphenyl)-s-triazine photostabilizers

The room temperature photophysical properties of several sulphonated and unsulphonated 6-(2′-hydroxy-4′-methoxyphenyl)-s-triazines were investigated in a range of solvents by means of steady state and picosecond fluorescence spectroscopy. Compounds possessing phenyl or p-tolyl groups in the s-triazinyl ring exhibit only a very weak normal Stokes-shifted fluorescence, arising from the initially excited chromophore. Substitution of phenoxy groups into the s-triazinyl ring results in the appearance of an additional longer-wavelength fluorescence which is assigned to the keto tautomer, formed following excited state intramolecular proton transfer (ESIPT). The rate constant for the (ESIPT) process that occurs in sodium 3-(3′,5′-diphenoxy-2′,4′,6′-triazinyl)-4-hydroxy-2-methoxybenzene sulphonate in water is estimated to be greater than 10¹¹ s⁻¹.     

A new three-dimensional supramolecular network, [Cd(Hbic)2(H2O)]·(4,4′-bpy)·H2O (H2bic = 1-H-benzimidazole-5-carboxylic acid; 4,4′-bpy = 4,4′-bipyridine): Synthesis, crystal structure and luminescence property

A photoluminescent supramolecular compound [Cd(Hbic)₂(H₂O)]·(4,4′-bpy)·H₂O, H₂bic = 1-H-benzimidazole-5-carboxylic acid, has been synthesized and structurally characterized. With CH–π stacking and hydrogen bond, the 4,4′-bipyridine is used as template to construct the neighboring layers into a three-dimensional supramolecular architecture. Solid-state emission spectrum of compound 1 shows luminescence with emission peak at 565 nm.     

Preparation and enantiomer separation behavior of selectively methylated β-cyclodextrin-bonded stationary phases for high performance chromatography

Native and three selectively methylated β-cyclodextrin (β-CD)-bonded stationary phases without an unreacted spacer arm for liquid chromatography were prepared, where heptakis(2-O-methyl)-β-CD, heptakis(3-O-methyl)-β-CD and heptakis(2,3-di-O-methyl)-β-CD were used as the methylated β-CDs. The enantiomer separation abilities of the resulting β-CD stationary phases for 12 pairs of dansylamino acid enantiomers and six pairs of N-3,5-dinitrobenzoyl amino acid methyl esters as model solutes were investigated. The effects of pH and methanol content of the mobile phase on the retention and resolution were examined to optimize the mobile phase conditions. The optimum resolution for the dansylamino acids was achieved using a mobile phase consisting of 1.0% triethylammonium acetate buffer (pH 5.0)–methanol (v/v 4/6) on the β-CD stationary phase. Heptakis(3-O-methyl)- and heptakis(2,3-di-O-methyl)-β-CD-bonded stationary phases showed little enantiomer separation abilities for the dansylamino acids. The heptakis(2-O-methyl)-β-CD-bonded stationary phase exhibited no enantioselectivities for those solutes.

For the N-3,5-dinitrobenzoyl amino acid methyl esters, the optimum resolution was achieved using a mobile phase consisting of 1.0% triethylammonium acetate buffer (pH 5.0)–methanol (v/v 9/1) on a heptakis(2-O-methyl)-β-CD stationary phase. The heptakis(2,3-di-O-methyl)-β-CD-bonded stationary phases exhibited no enantioselectivities for the N-3,5-dinitrobenzoyl amino acid methyl esters. β-CD and heptakis(3-O-methyl)-β-CD-bonded stationary phases had no enantiomer separation abilities for those solutes except for the N-3,5-dinitrobenzoyl phenylalanine methyl ester.     

Synthesis, characterization, and electrochemical, and electrical measurements of novel 4,4′-isopropylidendioxydiphenyl bridged bis and cofacial bis-metallophthalocyanines (Zn, Co)

4,4′-Isopropylidendioxydiphenyl bridged bis-metallophthalocyanines Zn(II) (5) and Co(II) (6) were synthesized from the compound 4,4′-isopropylidendioxydiphthalonitrile (3) and 4,5-bis(hexylthio)phthalonitrile (4). The new cofacial bis-phthalocyanines Zn(II) (7) and Co(II) (8) were synthesized from the corresponding 3 which can be obtained by the reaction of 4,4′-isopropylidendiphenol (1) with 4-nitrophthalonitrile (2). These complexes have been characterized by elemental analysis, UV/Vis, FT-IR, ¹H NMR and MALDI-TOF mass spectroscopies. The electrochemical properties of the complexes were examined by cyclic voltammetry, differential pulse voltammetry and controlled potential coulometry in nonaqueous media. Electrochemical results showed that while there is not any considerable interaction between the two phthalocyanine rings in bisphthalocyanine complexes 5 and 6, the splitting of the molecular orbitals occurs as a result of the strong interaction between the phthalocyanine rings in cofacial complexes 7 and 8.

Measurements of capacitance showed a well defined decrease with increasing frequency and an increase with increasing temperature at lower frequencies.     

Total synthesis of the antimalarial naphthylisoquinoline alkaloid 5-epi-4′-O-demethylancistrobertsonine C by asymmetric Suzuki cross-coupling

The first total synthesis of the antimalarial naphthylisoquinoline alkaloid 5-epi-4′-O-demethylancistrobertsonine C (1a) and its—as yet unnatural—atropo-diastereomer, 1b, is described. The key step of the synthesis is the construction of the rotationally hindered and thus stereogenic biaryl axis, which was built up by a Suzuki reaction. The use of chiral ligands in the palladium-catalyzed cross-coupling permitted to increase the low internal asymmetric induction up to a diastereomeric ratio of 74:26. The assignment of the axial configurations of the atropo-diastereomers was achieved by 2D NMR experiments and corroborated by quantum chemical CD calculations.     

Synthesis and X-ray crystal structures of rac- and meso-2,2′-propylidene-bis(1-indenyl) zirconium dichlorides

An improved synthesis of 2,2′-bis(1-indenyl)propane and the corresponding ansa-complexes of zirconium are reported. Synthesis of a mixture of rac- and meso-2,2′-propylidene-bis(1-indenyl)zirconium dichlorides involves a treatment of ZrCl₄ with bis[3-(trialkyltin)inden-1-yl]propane, where alkyl = ethyl, butyl, in toluene. This reaction gives the products in 92% yield and might be a convenient synthetic pathway to a number of straightforward ansa-metallocenes. Both rac- and meso-2,2′-propylidene-bis(1-indenyl)zirconium dichlorides were separated and isolated using simple work-up processes, and characterized by X-ray crystal structure analysis (rac:C2/c; a = 15.903(3) Å, b = 11.105(2) Å and c = 11.520(2) Å; β = 121.61(3)°; Z = 4; V = 1732.6(5) ų; R = 0.0350; meso-: P1¯; a = 9.739(2) Å, b = 12.798(4) Å and c = 15.322(4) Å; = 101.18(2)°; β = 121.61(2)°; γ = 90.54(2)°, Z = 4; V = 1795.4(8) ų; R = 0.0417).     

The chemistry of phenalenium system—II 7,8,2′,3′,4′,5′-Hexachloro-11-methoxy-6H-cyclopenta[a]pyrene-6-spiro-1′-cyclopenta-2′,4′-diene

7,8,2′,3′,4′,5′-Hexachloro-11-methoxy-6H-cyclopenta[a]pyrene-6-spiro-1′-cyclopenta-2′,4′-diene 5 has been obtained by the reaction of phenalenone and 1,2,3,4-tetrachlorocyclopentadiene. The gross structure of 5 has been determined by the X-ray analysis. The ground-state properties of 5were discussed from the spectroscopic data, dipole moment and bond lengths.     

Synthesis and characterization of dinuclear p-, m- and o-xylyl bridged complexes of molybdenum and tungsten. The crystal structures of μ-p-xylyl- bis(η-pentamethyl-cyclopentadienyltri- carbonylmolybdenum) and μ-m-xylyl-bis(η- pentamethylcyclopentadienyltricarbonyltungsten)

The reactions of η⁵-Cp^*M(CO)₃Na (M = Mo, W) with ,′-p-, m- and o-dichloro-xylenes yielded p-, m- and o-xylyl bridged dinuclear complexes of η⁵-Cp^*M(CO)₃ in high yields. All of such new complexes are stable to air and water, even stable in dilute acids and bases.     

Investigation on lanthanide binuclear complexes of 1,5-bis-(1′-phenyl-3′-methyl-5′-pyrazolone-4′)-1,5-pentanedione and 2,2′-bipyridine

The coordination of 1,5-bis-(1′-phenyl-3′-methyl-5′-pyrazolone-4′)-1,5-pentanedione (BPMPPD) and 2,2′-bipyridine (bipy) with lanthanide ions in water-alcohol solution has been studied. Binuclear complexes of the types : Ln₂(BPMPPD)₃(bipy)₂·nH₂O (n = 2 for Y, n = 4 for Eu, Gd, Dy, Ho, Er, Tm and Yb); Ln₂(BPMPPD)₃bipy·nH₂O (n = 10 for La, n = 3 for Pr, Nd, Sm and Tb) were formed. The compounds were characterized by elemental analysis, molar conductance, IR, UV, ¹H NMR spectroscopy, thermogravimetric analysis and fluorescence spectra.     

Rhenium(I) methoxo carbonyl complexes containing tetraphosphine or triphosphine ligands; facile separation and X-ray crystallographic studies of d/l- and meso-[{Re2(μ-OMe)2(CO)6}2(μ,μ′-1,1,4,7,10,10-hexaphenyl-1,4,7,10-tetra-phosphadecane)]

Reaction of the activated mixture of Re₂(CO)_10, Me₃NO and MeOH with a 1:1 mixture of rac (d/l)- and meso-1,1,4,7,10,10-hexaphenyl-1,4,7,10-tetraphosphadecane (hptpd) yields a mixture of (d/l)- and meso-[{Re₂(μ-OMe)₂(CO)₆}₂(μ,μ′-hptpd)] 1. The diastereomers can be easily separated by selective dissolution of d/l-1 in benzene, and give clearly distinguishable ¹H- and ³¹P-NMR spectra. The fluxional behavior of d/l-1 in solution has been studied by variable-temperature ¹H- and ³¹P-{¹H}-NMR spectroscopy. The crystal structures of both d/l- and meso-1 have been determined. Both molecules consist of two {Re₂(μ-OMe)₂(CO)₆} moieties which are bridged by the two P---CH₂---CH₂---P moieties of the hptpd ligand. Whilst the molecules of meso-1 possess crystallographic i-symmetry, those of d/l-1 do not have any crystallographic symmetry. These diastereomers therefore give clearly distinguishable Raman spectra in the solid state. Reaction of tris[2-(diphenylphosphino)ethyl]phosphine (tdppep) with the activated mixture affords the complex [{Re₂(μ-OMe)₂(CO)₆}(μ,η²-tdppep)] 2, and the analogous reaction involving bis[2-diphenylphospinoethyl)phenylphosphine (triphos) gives [{Re₂(μ-OMe)₂(CO)₆}(μ,μ′,η³-triphos){Re₂(CO)₉}] 3 and [{Re₂(μ-OMe)₂(CO)₆}(μ,η²-triphos)] 4.