Single-molecule surface-enhanced Raman spectroscopy of crystal violet isotopologues: theory and experiment

Single-molecule surface-enhanced Raman spectroscopy (SMSERS) of crystal violet (CV) has been reported since 1997, yet others have offered alternative explanations that do not necessarily imply SMSERS. Recently, the isotopologue approach, a statistically significant method to establish SMSERS, has been implemented for members of the rhodamine dye family. We provide the first demonstration of SMSERS of a triphenylmethane dye using the isotopologue approach. Two isotopologues of CV are employed to create chemically identical yet vibrationally distinct probe molecules. Experimental spectra were compared extensively with computational simulations to assign changes in mode frequencies upon deuteration. More than 90 silver nanoparticle clusters dosed with a 50:50 mixture of CV isotopologues were spectroscopically characterized, and the vibrational signature of only deuterated or undeuterated CV was observed 79 times, demonstrating that the isotopologue approach for proving SMSERS is applicable to both the CV and the rhodamine systems. The use of CV, a minimally fluorescent dye, allowed direct evaluation of enhancement factors (EF), which are reported herein. Through experiment and theory, we show that molecular electronic resonance Raman (RR) and surface-enhanced Raman effects combine synergistically in SMSERS. Excluding RR effects, the EF(SERS) is ～10(9). Variations and relationships between substrate morphology and optical properties are further characterized by correlated SMSERS-localized surface plasmon resonance (LSPR)-high-resolution transmission electron microscopy (HRTEM) studies. We did not observe SMSERS from individual nanoparticles; further, SMSERS-supporting dimers are heterodimers of two disparately sized particles, with no subnanometer gaps. We present the largest collection to date of HRTEM images of SMSERS-supporting nanoparticle assemblies.     

Probing the structure of single-molecule surface-enhanced Raman scattering hot spots

We present here a detailed study of the specific nanoparticle structures that give rise to single-molecule surface-enhanced Raman scattering (SMSERS). A variety of structures are observed, but the simplest are dimers of Ag nanocrystals. We chose one of these structures for detailed study using electrodynamics calculations and found that the electromagnetic SERS enhancement factors of 10(9) are easily obtained and are consistent with single-molecule SERS activity.     

Probing ground-state single-electron self-exchange across a molecule-metal interface

We have probed single-molecule redox reaction dynamics of hemin (chloride) adsorbed on Ag nanoparticle surfaces by single-molecule surface-enhanced Raman spectroscopy (SMSERS) combined with spectroelectrochemistry. Redox reaction at the molecule/Ag interface is identified and probed by the prominent fluctuations of the Raman frequency of a specific vibrational mode, ν(4), which is a typical marker of the redox state of the iron center in a hemin molecule. On the basis of the autocorrelation and cross-correlation analysis of the single-molecule Raman spectral trajectories and the control measurements of single-molecule spectroelectochemistry and electrochemical STM, we suggest that the single-molecule redox reaction dynamics at the hemin-Ag interface is primarily driven by thermal fluctuations. The spontaneous fluctuation dynamics of the single-molecule redox reaction is measured under no external electric potential across the molecule-metal interfaces, which provides a novel and unique approach to characterize the interfacial electron transfer at the molecule-metal interfaces. Our demonstrated approaches are powerful for obtaining molecular coupling and dynamics involved in interfacial electron transfer processes. The new information obtained is critical for a further understanding, design, and manipulation of the charge transfer processes at the molecule-metal interface or metal-molecule-metal junctions, which are fundamental elements in single-molecule electronics, catalysis, and solar energy conversion.     

Single-molecule SERS detection of C60

Single-molecule Surface-Enhanced Raman Scattering (SERS) detection of buckminsterfullerene (C(60)) is achieved by using different isotopologues of the molecule with a distribution around an average isotopic substitution ((12)C → (13)C) of ~30%. The distribution of different isotopologues creates a broad (~20 cm(-1)) average SERS signal within which single-molecule SERS spectra of individual isotopic realizations of the molecule can be distinguished. The SERS enhancement factors for SM-SERS C(60) events are typically in the range of ~10(8), suggesting a limitation imposed by either photobleaching or surface interactions with the (Ag) metallic colloids to reach the highest SERS hot-spots (which can typically have larger maximum enhancements). SM-SERS signals of isotopically substituted C(60) also show broader peaks (FWHM ≈ 4 cm(-1)) than equivalent signals in natural C(60). The latter feature suggests a contribution to the homogeneous broadening coming from isotopic disorder in the molecule; a feature that can only be observed with the ability to detect single-molecule spectra.     

New infrared bands of nonpolar OCS dimer and experimental frequencies for two intermolecular modes

Spectra of the nonpolar carbonyl sulfide dimer in the region of the OCS ν(1) fundamental band were observed in a slit-jet supersonic expansion. The jet was probed using radiation from a tunable diode laser employed in a rapid-scan signal averaging mode. Six new bands were observed and analyzed, all of which originate from the dimer ground vibrational state. Three were vibrational fundamentals involving the ((18)OCS)(2) and (16)OCS-(18)OCS isotopologues. They enabled an estimate to be made of the frequency of the infrared-forbidden mode corresponding to in-phase vibration of the OCS monomers in the dimer, a value needed to obtain an intermolecular vibrational frequency from one of the observed combination bands. A relatively weak b-type dimer band centered at 2103.105 cm(-1) was assigned to the OCS 4ν(2) (l = 0) bending overtone. Combination bands were observed involving the geared bend and van der Waals stretch intermolecular modes. The resulting experimental frequencies of 37.5(20) cm(-1) for the bend and 42.9727(1) cm(-1) for the stretch are in good agreement with a recent high level theoretical calculation.     

Resonant infrared laser-induced desorption of methane condensed on NaCl(100): isotope mixture experiments

Resonantly enhanced infrared laser-induced desorption of methane condensed on a single-crystal NaCl(100) surface is observed after excitation with the widely tunable infrared laser output of the free-electron laser at the free-electron laser for infrared experiments facility using mass spectroscopic detection and time-of-flight analysis. Desorption of methane is observed only when the exciting light is in resonance with an internal vibrational mode of the molecule. Different intramolecular modes of the three methane isotopologues under study--CH(4), CD(4), and CD(3)H--are excited; the degenerate deformation mode nu(4) is observed for CH(4) and CD(4) at 7.69 and 10.11 microm, respectively, as well as the nu(2) and nu(4) modes of CD(3)H at 7.79, 9.75, and 9.98 microm. The desorption signals for the pure layers of these different methane isotopologues as well as for different mixtures of two of these are investigated as a function of the infrared wavelength and the laser fluence. The desorption behavior for pure and mixed layers is compared and the underlying desorption mechanism is discussed.     

Single-molecule pump-probe experiments reveal variations in ultrafast energy redistribution

Single-molecule pump probe (SM2P) is a novel, fluorescence-based technique that allows the study of ultrafast processes on the single-molecule level. Exploiting SM2P we have observed large variations (from 1 ps to below 100 fs) in the energy redistribution times of chemically identical molecules in the same sample. Embedding the molecules in a different matrix or changing the excitation wavelength does not lead to significant changes in the average redistribution time. However, chemically different molecules exhibit different characteristic redistribution times. We therefore conclude that the process measured with the SM2P technique is dominated by intramolecular energy redistribution and not intermolecular transfer to the surrounding matrix. The matrix though is responsible for inducing conformational changes in the molecule, which affect the coupling between electronic and vibrational modes. These conformational changes are the main origin of the observed broad distribution of redistribution times.     

Bias-controlled selective excitation of vibrational modes in molecular junctions: a route towards mode-selective chemistry

We show that individual vibrational modes in single-molecule junctions with asymmetric molecule-lead coupling can be selectively excited by applying an external bias voltage. Thereby, a non-statistical distribution of vibrational energy can be generated, that is, a mode with a higher frequency can be stronger excited than a mode with a lower frequency. This is of particular interest in the context of mode-selective chemistry, where one aims to break specific (not necessarily the weakest) chemical bond in a molecule. Such mode-selective vibrational excitation is demonstrated for two generic model systems representing asymmetric molecular junctions and/or scanning tunneling microscopy experiments. To this end, we employ two complementary theoretical approaches, a nonequilibrium Green's function approach and a master equation approach. The comparison of both methods reveals good agreement in describing resonant electron transport through a single-molecule contact, where differences between the approaches highlight the role of non-resonant transport processes, in particular co-tunneling and off-resonant electron-hole pair creation processes.     

Rotational spectrum and internal dynamics of tetrahydrofuran-krypton

The rotational spectrum of the tetrahydrofuran-krypton van der Waals complex has been investigated by pulsed-jet Fourier transform microwave spectroscopy. The spectra of the (84)Kr and (86)Kr isotopologues have been assigned and the krypton atom is located nearly over the oxygen atom, almost perpendicular to the COC plane. Each rotational transition is split into two component lines due to, according to the observed Coriolis coupling term between the tunneling states, the residual pseudorotational effects of the ring in the complex. The splitting between the two vibrational sublevels is 87.462(2) and 87.062(2) MHz for the (84)Kr and (86)Kr isotopologues, respectively. These splittings have been used to determine the barrier to inversion, B(2) = 67 cm(-1). The dissociation energy has been estimated to be 3.7 kJ mol(-1) from centrifugal distortion effects.     

Completing the 3d metal fluoride series: the pure rotational spectrum of ZnF (X2Sigma+)

The pure rotational spectrum of the ZnF radical has been recorded in the range of 176-527 GHz using millimeter/submillimeter direct absorption techniques. This study is the first gas-phase spectroscopic investigation of this species. Between 5 and 11 transitions were measured for each of five isotopologues of this radical (64ZnF, 66ZnF, 67ZnF, 68ZnF, and 70ZnF) in the ground and several excited vibrational (v=1, 2, and 3) states. Each transition consists of spin-rotation doublets with a splitting of approximately 150 MHz, indicating that the electronic ground state of ZnF is 2Sigma+, as predicted by theory. Fluorine hyperfine splitting was observed in three isotopologues (64ZnF, 66ZnF, and 67ZnF), and hyperfine structure from the zinc-67 nucleus (I=52) was additionally resolved in 67ZnF. Rotational, fine structure, and 19F and 67Zn hyperfine constants were determined for ZnF, as well as equilibrium parameters. The bond length of the main isotopologue 64ZnF was calculated to be re=1.7677 A. Evaluation of the hyperfine constants indicates that the sigma orbital containing the unpaired electron is approximately 80% 4s(Zn) in character with approximately 10% contributions from each of the 2p(F) and 4p(Zn) orbitals. These results imply that ZnF is somewhat less ionic than CaF, as suggested by theory.     

CVRQD ab initio ground-state adiabatic potential energy surfaces for the water molecule

The high accuracy ab initio adiabatic potential energy surfaces (PESs) of the ground electronic state of the water molecule, determined originally by Polyansky et al. [Science 299, 539 (2003)] and called CVRQD, are extended and carefully characterized and analyzed. The CVRQD potential energy surfaces are obtained from extrapolation to the complete basis set of nearly full configuration interaction valence-only electronic structure computations, augmented by core, relativistic, quantum electrodynamics, and diagonal Born-Oppenheimer corrections. We also report ab initio calculations of several quantities characterizing the CVRQD PESs, including equilibrium and vibrationally averaged (0 K) structures, harmonic and anharmonic force fields, harmonic vibrational frequencies, vibrational fundamentals, and zero-point energies. They can be considered as the best ab initio estimates of these quantities available today. Results of first-principles computations on the rovibrational energy levels of several isotopologues of the water molecule are also presented, based on the CVRQD PESs and the use of variational nuclear motion calculations employing an exact kinetic energy operator given in orthogonal internal coordinates. The variational nuclear motion calculations also include a simplified treatment of nonadiabatic effects. This sophisticated procedure to compute rovibrational energy levels reproduces all the known rovibrational levels of the water isotopologues considered, H(2) (16)O, H(2) (17)O, H(2) (18)O, and D(2) (16)O, to better than 1 cm(-1) on average. Finally, prospects for further improvement of the ground-state adiabatic ab initio PESs of water are discussed.     

Dissociation energies of six NO2 isotopologues by laser induced fluorescence spectroscopy and zero point energy of some triatomic molecules

We have measured the rotationless photodissociation threshold of six isotopologues of NO2 containing 14N, 15N, 16O, and 18O isotopes using laser induced fluorescence detection and jet cooled NO2 (to avoid rotational congestion). For each isotopologue, the spectrum is very dense below the dissociation energy while fluorescence disappears abruptly above it. The six dissociation energies ranged from 25 128.56 cm(-1) for 14N16O2 to 25 171.80 cm(-1) for 15N18O2. The zero point energy for the NO2 isotopologues was determined from experimental vibrational energies, application of the Dunham expansion, and from canonical perturbation theory using several potential energy surfaces. Using the experimentally determined dissociation energies and the calculated zero point energies of the parent NO2 isotopologue and of the NO product(s) we determined that there is a common De = 26 051.17+/-0.70 cm(-1) using the Born-Oppenheimer approximation. The canonical perturbation theory was then used to calculate the zero point energy of all stable isotopologues of SO2, CO2, and O3, which are compared with previous determinations.     

Interaction of plasmon and molecular resonances for rhodamine 6G adsorbed on silver nanoparticles

Localized surface plasmon resonance (LSPR) is a key optical property of metallic nanoparticles. The peak position of the LSPR for noble-metal nanoparticles is highly dependent upon the refractive index of the surrounding media and has therefore been used for chemical and biological sensing. In this work, we explore the influence of resonant adsorbates on the LSPR of bare Ag nanoparticles (lambda(max,bare)). Specifically, we study the effect of rhodamine 6G (R6G) adsorption on the nanoparticle plasmon resonance because of its importance in single-molecule surface-enhanced Raman spectroscopy (SMSERS). Understanding the coupling between the R6G molecular resonances and the nanoparticle plasmon resonances will provide further insights into the role of LSPR and molecular resonance in SMSERS. By tuning lambda(max,bare) through the visible wavelength region, the wavelength-dependent LSPR response of the Ag nanoparticles to R6G binding was monitored. Furthermore, the electronic transitions of R6G on Ag surface were studied by measuring the surface absorption spectrum of R6G on an Ag film. Surprisingly, three LSPR shift maxima are found, whereas the R6G absorption spectrum shows only two absorption features. Deconvolution of the R6G surface absorption spectra at different R6G concentrations indicates that R6G forms dimers on the metal surface. An electromagnetic model based on quasi-static (Gans) theory reveals that the LSPR shift features are associated with the absorption of R6G monomer and dimers. Electronic structure calculations of R6G under various conditions were performed to study the origin of the LSPR shift features. These calculations support the view that the R6G dimer formation is the most plausible cause for the complicated LSPR response. These findings show the extreme sensitivity of LSPR in elucidating the detailed electronic structure of a resonant adsorbate.     

Single-Molecule Force Spectroscopy Reveals Stability of mitoNEET and its [2Fe2Se] Cluster in Weakly Acidic and Basic Solutions

The outer mitochondrial membrane protein mitoNEET (mNT) is a recently identified iron-sulfur protein containing a unique Fe₂S₂(His)₁(Cys)₃ metal cluster with a single Fe−N(His87) coordinating bond. This labile Fe−N bond led to multiple unfolding/rupture pathways of mNT and its cluster by atomic force microscopy-based single-molecule force spectroscopy (AFM-SMFS), one of most common tools for characterizing the molecular mechanics. Although previous ensemble studies showed that this labile Fe−N(His) bond is essential for protein function, they also indicated that the protein and its [2Fe2S] cluster are stable under acidic conditions. Thus, we applied AFM-SMFS to measure the stability of mNT and its cluster at pH values of 6, 7, and 8. Indeed, all previous multiple unfolding pathways of mNT were still observed. Moreover, single-molecule measurements revealed that the stabilities of the protein and the [2Fe2S] cluster are consistent at these pH values with only ≈20 pN force differences. Thus, we found that the behavior of the protein is consistent in both weakly acidic and basic solutions despite a labile Fe−N bond.     

Quantitative detection of C-deuterated drugs by CARS microscopy and Raman microspectroscopy

The introduction of carbon-deuterium (C-D) bonds into drug compounds by organic synthesis is a non-invasive labelling approach, which does not alter the chemical and physiological properties of the drug itself. C-deuterated drugs exhibit characteristic vibrational signatures in the C-D stretching region around 2100-2300 cm(-1), which avoids spectral interference with contributions from a complex biological environment. In this paper, the quantitative detection of C-deuterated drugs by Raman microspectroscopy and single-band CARS microscopy is examined. Concentration-dependent studies on drugs with aliphatic and aromatic C-D moieties were performed in a two-channel microfluidic chip, using the corresponding non-deuterated (C-H) isotopologues as an internal reference.     

Photolysis of oxalyl chloride (ClCO)2 at 193 nm: emission of CO(v<or=6, J<or=60) detected with time-resolved Fourier-transform spectroscopy

Upon photolysis of oxalyl chloride at 193 nm, time-resolved and rotationally resolved emission of CO(v相似文献   

Can quasiclassical trajectory calculations reproduce the extreme kinetic isotope effect observed in the muonic isotopologues of the H + H2 reaction?

Rate coefficients for the mass extreme isotopologues of the H + H(2) reaction, namely, Mu + H(2), where Mu is muonium, and Heμ + H(2), where Heμ is a He atom in which one of the electrons has been replaced by a negative muon, have been calculated in the 200-1000 K temperature range by means of accurate quantum mechanical (QM) and quasiclassical trajectory (QCT) calculations and compared with the experimental and theoretical results recently reported by Fleming et al. [Science 331, 448 (2011)]. The QCT calculations can reproduce the experimental and QM rate coefficients and kinetic isotope effect (KIE), k(Mu)(T)/k(Heμ)(T), if the Gaussian binning procedure (QCT-GB)--weighting the trajectories according to their proximity to the right quantal vibrational action--is applied. The analysis of the results shows that the large zero point energy of the MuH product is the key factor for the large KIE observed.     

Molecular structures of the two most stable conformers of free glycine

The equilibrium molecular structures of the two lowest-energy conformers of glycine, Gly-Ip and Gly-IIn, have been characterized by high-level ab initio electronic structure computations, including all-electron cc-pVTZ CCSD(T) geometry optimizations and 6-31G* MP2 quartic force fields, the latter to account for anharmonic zero-point vibrational effects to isotopologic rotational constants. Based on experimentally measured vibrationally averaged effective rotational constant sets of several isotopologues and our ab initio data for structural constraints and zero-point vibrational shifts, least-squares structural refinements were performed to determine improved Born-Oppenheimer equilibrium (r(e)) structures of Gly-Ip and Gly-IIn. Without the ab initio constraints even the extensive set of empirical rotational constants available for 5 and 10 isotopologues of Gly-Ip and Gly-IIn, respectively, cannot satisfactorily fix their molecular structure. Excellent agreement between theory and experiment is found for the rotational constants of both conformers, the rms residual of the final fits being 7.8 and 51.6 kHz for Gly-Ip and Gly-IIn, respectively. High-level ab initio computations with focal point extrapolations determine the barrier to planarity separating Gly-IIp and Gly-IIn to be 20.5 +/- 5.0 cm(-1). The equilibrium torsion angle tau(NCCO) of Gly-IIn, characterizing the deviation of its heavy-atom framework from planarity, is (11 +/- 2) degrees. Nevertheless, in the ground vibrational state the effective structure of Gly-IIn has a plane of symmetry.     

A microwave and quantum chemical study of cyclopropaneselenol

The microwave spectrum of cyclopropaneselenol, C 3H 5SeH, has been investigated in the 21.9-80 GHz frequency range. The microwave spectra of the ground vibrational state of five isotopologues of cyclopropaneselenol (C 3H 5 (82)SeH, C 3H 5 (80)SeH, C 3H 5 (78)SeH, C 3H 5 (77)SeH, and C 3H 5 (76)SeH) of one conformer, as well as the spectra of two vibrationally excited states of each of the C 3H 5 (80)SeH and C 3H 5 (78)SeH isotopologues of this rotamer, have been assigned. The H-C-Se-H chain of atoms is synclinal in this conformer, and there is no indication of further rotameric forms in the microwave spectrum. The b-type transitions of the ground vibrational state of the more abundant species C 3H 5 (80)SeH and C 3H 5 (78)SeH were split into two components, which is assumed to arise from tunneling of the proton of the selenol group between two equivalent synclinal potential wells. The tunneling frequencies were 0.693(55) MHz for C 3H 5 (80)SeH and 0.608(71) MHz for C 3H 5 (78)SeH. The microwave study has been augmented by high-level density functional and ab initio quantum chemical calculations, which indicate that the H-C-Se-H dihedral angle is approximately 75 degrees from synperiplanar (0 degrees).     

Free-jet rotational spectrum and tunneling motion of difluoromethane...xenon

The rotational spectra of three isotopologues of difluoromethane...xenon have been investigated by free-jet millimeter-wave absorption spectroscopy. Only mu(c)-type transitions have been observed, all of them evenly split due to the internal motion of Xe relative to the difluoromethane moiety. The vibrational splitting, 39.1(3) MHz, has been used to estimate the tunneling barrier, V(2) = 109 cm(-1). Information on the dissociation energy has been deduced from centrifugal distortion effects (E(B) = 1.8 kJ mol(-1)). The xenon atom lies in the sigma(v) symmetry plane of difluoromethane containing the hydrogen atoms, at an r(0) distance of 3.816 A from its center of mass (cm), and forms a Xe-cm-C r(0) angle of 118 degrees . The observed conformation is in agreement with the minimum found with a distributed polarizability model.