"Forbidden" disulfides: their role as redox switches

Seminal studies by Richardson and Thornton defined the constraints imposed by protein structure on disulfide formation and flagged forbidden regions of primary or secondary structure seemingly incapable of forming disulfide bonds between resident cysteine pairs. With respect to secondary structure, disulfide bonds were not found between cysteine pairs: A. on adjacent beta-stands; B. in a single helix or strand; C. on non-adjacent strands of the same beta-sheet. In primary structure, disulfide bonds were not found between cysteine pairs: D. adjacent in the sequence. In the intervening years it has become apparent that all these forbidden regions are indeed occupied by disulfide-bonded cysteines, albeit rather strained ones. It has been observed that sources of strain in a protein structure, such as residues in forbidden regions of the Ramachandran plot and cis-peptide bonds, are found in functionally important regions of the protein and warrant further investigation. Like the Ramachandran plot, the earlier studies by Richardson and Thornton have identified a fundamental truth in protein stereochemistry: "forbidden" disulfides adopt strained conformations, but there is likely a functional reason for this. Emerging evidence supports a role for forbidden disulfides in redox-regulation of proteins.     

"Dimers" and "trimers" of tetrahydroindenes and hexahydroazulenes, respectively generated from [2-(1-cycloalkenyl)ethynyl]carbene complexes (M = W, Cr) by cascade cyclization/cycloaddition reactions

A cascade of cyclization/cycloaddition reactions was triggered by addition of protic oxygen nucleophiles ROH 2 (RO = CH3CO2, PhCO2, PhO) to [2-(1-cyclohexenyl)ethynyl]carbene complexes 1b and 1c (M=W, Cr, respectively), affording highly strained "dimers" 11/11' and "trimers" 12 of the carbene ligand. The first reaction step involved the formation of 1-metalla1,3,5-hexatrienes 7, which readily gave tetrahydroindenes 8 by pi cyclization and extrusion of the metal unit. "Dimers" 11/11' were generated from tetrahydroindenes 8 by a highly exo selective [4+2] cycloaddition of compounds 1b and 1c to afford 1-metalla-1,3,5-hexatriene intermediates 9, and a spontaneous pi cyclization of the latter compounds involving the disengagement of the metal unit. Propenylidene cyclohexenes 13/13' were formed in "ene"-type side reactions to the pi cyclization of 1-metalla-1,3,5-hexatrienes 7, by loss of the metal unit. "Dimers" 11 were transformed into "trimers" 12 by a [4+2] cycloaddition and subsequent pi-cyclization of the resulting 1-metalla-1,3,5-hexatriene system. The course of the reaction was elucidated by means of model reactions with (2-phenylethynyl)carbene complex 14, in which 1-metalla-1,3,5-hexatriene intermediates 16 and 17 were isolated and characterized. Alkynyl benzene derivatives 19 were obtained by an unprecedented ring-expansion of a cyclopentadiene unit of "dimers" 11a and 11c, involving the insertion of a carbene carbon atom of compound 14 into a C=C bond. A reaction cascade leading to "dimers" 24/24' could also be triggered by treatment of compounds 2 with [2-(1-cycloheptenyl)ethynyl]carbene tungsten complex 1d.     

Activated sterically strained C=N bond in <Emphasis Type="Italic">N</Emphasis>-substituted <Emphasis Type="Italic">p</Emphasis>-quinone mono- and diimines: XV. Synthesis,structure, and reactions with alcohols of <Emphasis Type="Italic">N</Emphasis>-carbamoyl-1,4-benzoquinone imines

The reaction of 4-aminophenols with N-nitrourea or with sodium cyanate in acetic acid gave the corresponding 4-ureidophenols which were oxidized to N-carbamoyl-1,4-benzoquinone imines, substituted N-(4-oxocyclohexa-2,5-dien-1-ylidene)ureas. N-(2,6-Dimethyl-4-oxocyclohexa-2,5-dien-1-ylidene)urea possessing activated sterically strained C=N bond reacted with alcohols to afford N-(1-alkoxy-2,6-dimethyl-4-oxocyclohexa-2,5-dienyl)ureas.     

Progress toward the total synthesis of ingenol: construction of the complete carbocyclic skeleton

[reaction: see text] The complete carbocyclic skeleton of ingenol is assembled via a route that employs ring-closing metathesis (RCM) to close the strained "inside-outside" BC ring system (i.e., 24 --> 25).     

1,4-pentadienyl-3-sulfonamides: frameworks for "disfavored" radical cascade cyclizations

[reaction: see text]. 1,4-pentadienyl-3-sulfonamides afford products including those resulting from disfavored 5-endo-trig reactions when subjected to radical cyclization conditions. Products resulting from pathways featuring 4-exo-trig cyclizations are also detected, even when the 4-exo-trig reaction leads to a highly strained bicyclo[3.2.0] ring system.     

Trapping of the highly strained [5](2,4)quinolinophane system

The highly strained [5](2,4)quinolinophane system can be generated as an intermediate (2b), which is extremely susceptible towards the attack of both nucleophilic and electrophilic species. Addition of water at the carbon bridgehead C2 occurs rapidly and is followed by rearrangements to give a strain free product 10. An unusual carbene addition at the N1C2 bond of 2b is proposed to explain the formation of the strained ‘anti-Bredt’ type olefin 11.     

Synthesis and Physical Properties of Sterically Congested Cycloalkenes, 1,2-Di-tert-butyl-3,3,5,5-tetramethylcyclopentene and 1,2-Di-tert-butyl-3,3,6,6-tetramethylcyclohexene

Two sterically congested cycloalkenes (9 and 10), congeners of tetra-tert-butylethylene, were synthesized and characterized. Oxidation of the bicyclic 1,3-dithietane 8 with dimethyldioxirane (DMD) gave the endo,endo-disulfoxide 13, thermal isomerization of which to the endo,exo-disulfoxide 15 followed by oxidation with DMD gave the trioxide 18. Heating 18 in refluxing 1,3-dimethyl-2-imidazolidinone furnished 1,2-di-tert-butyl-3,3,5,5-tetramethylcyclopentene (9) in 69% yield by a 2-fold extrusion process. The reaction of the 1,6-diketone dihydrazone 23 with Se(2)Cl(2) gave the selenadiazoline 34 and the 1,3-diselenetane 35. Heating 34 at 115-130 degrees C gave 1,2-di-tert-butyl-3,3,6,6-tetramethylcyclohexene (10), a "didehydro" derivative of tetra-tert-butylethylene, in 43% yield. The C=C bond in 10 is strained in degree comparable to those of most strained alkenes reported so far.     

"Stapled" bis(phthalocyaninato)niobium(IV), Pc2Nb: X-ray crystal structure,chemical and electrochemical behavior,and theoretical studies. Perspectives for the use of Pc2Nb (thin films) as an "optically passive electrode" in electrochromic devices

Recrystallization of the previously reported monosolvated bis(phthalocyaninato)niobium(IV), [Pc2Nb].CINP (CINP = 1-chloronaphthalene), has allowed isolation of a single crystal of a new solvated form, i.e. [Pc2Nb]. 3.5CINP, whose structure has been elucidated by X-ray work: space group P2(1)/n (No. 14); a = 16.765(3), b = 23.800(4), c = 19.421(4) A; alpha = gamma = 90 degrees, beta = 92.51(2) degrees; Z = 4. The sandwiched material is a "stapled" molecule, characterized by the presence of two intramolecular interligand C-C sigma bonds and highly strained phthalocyanine units, as formerly observed by crystallographic work for its Ti(IV) analogue, [Pc2Ti], and the +1 corresponding fragment, [Pc2Nb]+, present in the species [Pc2Nb](l3)(l2)0.5.3.5CINP. [Pc2Nb] appears to be reluctant to undergo further oxidation above the +1 oxidation state. Detailed theoretical studies by DFT and TDDFT methods have been developed on [Pc2Nb] and [Pc2Nb]+, also extended for comparison to the Ti(IV) complex [Pc2Ti], and an adequate picture of the ground-state electronic structure of these species has been achieved. Moreover, the excitation energies and oscillator strengths calculated for the closed-shell systems, [Pc2Ti] and [Pc2Nb]+, provide a satisfactory interpretation of their characteristic visible optical spectra and help to rationalize the similar features observed in the visible spectrum of the open-shell "stapled" complex, [Pc2Nb]. Thin solid films (100-250 nm) of [Pc2Nb] deposited on ITO (indium-doped tin oxide) show a reversible redox process in neutral or acidic aqueous electrolytes. The electrochemical and electrochromic properties of the sandwiched complex, combined with impedance and UV/visible spectral measurements, are presented and discussed. The achieved electrochemical information, while substantially in keeping with the observed chemical redox behavior and theoretical predictions, qualifies [Pc2Nb] as an "optically passive" electrode and a promising material for its use in electrochromic devices.     

Branched phospha[7]triangulanes

A highly strained, thermally stable (up to 150 degrees C) branched phospha[7]triangulane was synthesized from the second-generation bicyclopropylidene and transient phosphinidene [Ph-P=W(CO)5], followed by demetalation in refluxing xylene. Bulkier transient CuCl-alkene-complexed phosphinidene gave 2-phosphabicyclo-[3.2.0]hept-1(5)-ene as an additional product. The "outer sphere" spirocyclopropanes provide a stabilizing factor for both of these novel compounds.     

Total synthesis of ingenol

A total synthesis of the biologically important diterpene ingenol has been completed. Ring-closing olefin metathesis was used to construct the strained "inside-outside" tetracyclic skeleton, and a series of diastereoselective reactions were employed to complete the synthesis. Another naturally occurring ingenane, 20-deoxyingenol, has also been prepared.     

Synthetic studies on the ingenane diterpenes. An improved entry into a trans-intrabridgehead system

[reaction: see text] The efficient construction of an ingenol intermediate exhibiting "insideminus signoutside" intrabridgehead stereochemistry is reported. The sequence features the net conversion of a cis-intrabridgehead compound into a highly strained trans-species via palladium-mediated isomerization of an allylic epoxide followed by a low-temperature alkoxide-accelerated 1,5-hydrogen migration.     

Strain release in organic photonic nanoparticles for protease sensing

Proteases are overexpressed in most cancers and proteolytic activity has been shown to be a viable marker for cancer imaging in vivo. Herein, we describe the synthesis of luminescence-quenched shell cross-linked nanoparticles as photonic nanoprobes for protease sensing. Protease sensing scheme is based on a "turn-on" mechanism where the protease cleaves peptide cross-linkers of the fluorescence-quenched shell cross-linked NP (OFF state) leading to a highly emissive non-cross linked NP (ON state). The cross-linked particles can be strained by exposure to a good solvent and proteolysis allows for particle expansion (swelling) and a recovery of the luminescence.     

Crystal and molecular structure of <Emphasis Type="Italic">E</Emphasis>-3-(1,3-dimethylindol-2-yl)methylene-4-isopropylidenetetrahydrofuran-2,5-dione

The crystal and molecular structure of E-3-(1,3-dimethylindol-2-yl)methylene-4-isopropylidenetetrahydrofuran-2,5-dione, C₁₈H₁₇NO₃ (I), was investigated by XRD. The monoclinic structure of I (space group P2₁/c, a = 12.411(2) Å, b = 7.586(1) Å, c = 16.107(3) Å, β = 96.90(2)°, Z = 4) was solved by direct methods and refined by the full-matrix least squares in an anisotropic approximation to R = 0.044 for all 2842 independent reflections collected (CAD-4 automatic diffractometer, λCuK _α). The geometric parameters of sterically strained molecule I were determined with a high accuracy.     

Difficult macrocyclizations: new strategies for synthesizing highly strained cyclic tetrapeptides

[reaction: see text] Cyclic tetrapeptides are an intriguing class of natural products. To synthesize highly strained cyclic tetrapeptides we developed a macrocyclization strategy that involves the inclusion of 2-hydroxy-6-nitrobenzyl (HnB) group at the N-terminus and in the "middle" of the sequence. The N-terminal auxiliary performs a ring closure/ring contraction role, and the backbone auxiliary promotes cis amide bonds to facilitate the otherwise difficult ring contraction. Following this route, the all-L cyclic tetrapeptide cyclo-[Tyr-Arg-Phe-Ala] was successfully prepared.     

Metallorganische Verbindungen des Kupfers XIII. Kupfer(I)-chlorid-Komplexe winkelgespannter Cycloheptine Synthesen und Röntgenstrukturanalysen

The strained cycloheptynes 2a, 2b and 2c react with copper(I) chloride to form the dinuclear complexes [CuCl(cycloheptyne)]₂ 3a, 3b and 3c respectively. X-ray diffraction studies on all three compounds 3 show an increase in strength of the copper-alkyne bond with increasing deformation of the alkyne moiety from the ideal 180°. Thus going from the least strained alkyne (2c) to the most strained one (2a), the Cu-C bond lengths in the corresponding complexes decrease from 197.5 pm (3c) to 194.9 pm (3a). The C≡C-C angles increase from 145.6° (3a) over 147.4° (3b) to 151.6° (3c).

Zusammenfassung

Die gespannten Cycloheptine 2a, 2b und 2c reagieren mit Kupfer(I)—chlorid unter Bildung der zweikernigen Komplexe [CuCl(cycloheptin)]₂ 3a, 3b und 3c. Röntgenstrukturanalysen von allen drei Verbindungen 3 zeigen, daβ die Stärke der Kupfer—Alkin-Bindung zunimmt je mehr das ganze Alkinsystem vom idealen 180°-Winkel abweicht. Geht man vom am wenigsten gespannten Alkin (2c) zum gespanntesten (2a), so nehmen die Cu-C-Bindungslängen in den entsprechenden Komplexen von 197.5 pm (3c) auf 194.9 pm (3a) ab. Die C≡C-C-Winkel werden von 145.6° (3a) über 147.4° (3b) nach 151.6° (3c) hin gröβer.     

Synthesis of oligoribonucleic acid conjugates using a cyclooctyne phosphoramidite

The conjugation of a ribonucleic acid 16-mer with the cationic amphiphilic peptide penetratin and an anionic hyaluronan tetrasaccharide by means of Cu-free "click" chemistry is reported. The alkyne-functionalized 16-mer was prepared by automated solid-phase synthesis, using a newly developed strained cyclooctyne phosphoramidite in the final coupling. Cycloaddition of the alkyne functionalized RNA to the azide containing biomolecules led to a clean conversion into the corresponding nucleic acid conjugates.     

Restricted geometry optimization: a different way to estimate stabilization energies for aromatic molecules of various types

At RHF, MPn, and DFT levels, a procedure of geometry optimization under the restrictions of pi-orbital interactions (GOR) was developed, thus providing a conjugated molecule with the following two types of localized reference geometries: a "GL" geometry where all double bonds are localized, and n different "GE-n" geometries, in each of which only two double bonds were permitted to conjugate. Interestingly, the molecular energy differences between the corresponding pairs of GE-n and GL geometries were found to be additive in each of the acyclic polyenes, and these were not additive for benzene. As a result, an extra stabilization energy (ESE) value of -39.0 kcal/mol was found in benzene. Afterward, GOR was applied to benzene- and furan-like species, strained aromatic molecules, and substituted benzenes, and the calculated ESEs for these molecules were found to be in reasonable ranges. The GOR can isolate a specific group from other groups, and it has several special functions. First, with regard to the substituent effect, the ESE difference between substituted benzene and benzene can be partitioned into conjugative and inductive parts. Second, the behavior of strained aromatic molecules can be ascertained from the roles of their resonance interactions, strained-induced bond localization (SIBL), and inductive effects, indicating that it is resonance interactions, rather than SIBL, which are responsible for localizing double bonds. Emphatically, it is the GL and GE-n geometries of aromatic molecules, rather than nonaromatic compounds, which can be used as the reference structures for calculating ESE. Particularly, these localized geometries are no longer arbitrary.     

Synthese homokonjugierter Polyene: 2,4-Dimethylenbicyclo[3.2.0]oct-6-en und 2,5-Dimethylenbicyclo[4.2.0]non-7-en

The synthesis of the two homoconjugated trienes has been achieved by cleavage of the strained -bonds of suitable cyclopropane and cyclobutane precursors. Ionization energies are discussed.

     

Microscopic theory of orientational order, structure and thermodynamics in strained polymer liquids and networks

A microscopic integral equation theory of the segmental orientational order parameter, structural correlations and thermodynamics of strained polymer solutions, melts and networks has been developed. The nonclassical problem of the consequences of intermolecular excluded volume repulsions and chain connectivity is addressed. The theory makes several novel predictions, including effective power law dependences of the orientational order parameter on monomer concentration and chain degree of polymerization, and strain hardening of the bulk modulus. The predictions of a nearly classical strain dependence, and supralinear scaling with segment concentration, of the strain-induced nematic order parameter is in agreement with nuclear magnetic resonance experiments. The absolute magnitudes of the a priori calculated orientational order parameter agree with simulations and experiments to within a factor of 2. The possible complicating influence of "trapped entanglements" in crosslinked networks is discussed. Extensions of the theory are possible to treat the mechanical response of flexible polymer liquids and rubbers, and the structure, thermodynamics, and mechanical properties of strained liquid crystal forming polymers.     

Strained metallocenophanes and related organometallic rings containing pi-hydrocarbon ligands and transition-metal centers

The structures, bonding, and ring-opening reactions of strained cyclic carbon-based molecules form a key component of standard textbooks. In contrast, the study of strained organometallic molecules containing transition metals is a much more recent development. A wealth of recent research has revealed fascinating nuances in terms of structure, bonding, and reactivity. Building on initial work on strained ferrocenophanes, a broad range of strained organometallic rings composed of a variety of different metals, pi-hydrocarbon ligands, and bridging elements has now been developed. Such strained species can potentially undergo ring-opening reactions to functionalize surfaces and ring-opening polymerization to form easily processed metallopolymers with properties determined by the presence of the metal and spacer. This Review summarizes the current state of knowledge on the preparation, structural characterization, electronic structure, and reactivity of strained organometallic rings with pi-hydrocarbon ligands and d-block metals.