Synthesis and crystal structure of <Emphasis Type="Italic">N</Emphasis>-(6methoxylbenzothiazol-2-yl)-1-(4-fluorophenyl)<Emphasis Type="Italic">O</Emphasis>,<Emphasis Type="Italic">O</Emphasis>-dipropyl-<Emphasis Type="Italic">α</Emphasis>-aminophosphonate

Molecular and crystal structure of N-(6-methoxybenzothiazol-2-yl)-1-(4-fluorophenyl)-O,O-dipropyl-α-aminophosphonate, C₂₁H₂₆FN₂O₄PS, have been determined by single-crystal X-ray diffraction study. The title compound is tetragonal, with a = 21.35(3) Å, c = 20.16(5) Å, Z = 16, D _x = 1.308 Mg/m³, μ(MoKα) = 0.247 mm^?1, and space group is I4₁/a. The structure was solved by direct method and refined to a final R = 0.0687 for 2370 reflections with I > 2σ(I). The compound shows a fully delocalized benzothiazole system with a sp² hybridization of the N(2). There is a strong intermolecular hydrogen bond between P=O and NH. The crystal structure is stabilized by a strong intermolecular N–H?sO hydrogen bond.     

Synthesis and Crystal Structure of Bis (<Emphasis Type="Italic">N</Emphasis>,<Emphasis Type="Italic">N</Emphasis>,<Emphasis Type="Italic">N</Emphasis>′,<Emphasis Type="Italic">N</Emphasis>′-tetramethylethylendiammonium) Octaiodo Pentachloroantimonate (III)

Abstract  

The synthesis and Crystal structure are given for the bis (N,N,N′,N′-tetramethylethylendiammonium) octaiodo pentachloroantimonate (III) salt. An X-ray investigation has shown that the title compound crystallizes in a monoclinic system, space group P2₁/m with the following lattice parameters a = 9.786(2) Ǻ, b = 14.024(5) Ǻ, c = 14.336(3) Ǻ, β = 91.35(2)° and Z = 2. The structure was solved from 3085 independent reflections with R ₁ = 0.0402 and wR ₂ = 0.0952 and refined with 152 parameters. The structure shows a layer arrangement perpendicular to the [(b)\vec] \vec{b} -axis: planes of [SbCl₅]²⁻, I₃ ⁻ and I₅ ⁻ anions alternate with planes of [(CH₂)₂(NH(CH₃)₂)₂]²⁺ cations. The [SbCl₅]²⁻ square pyramids present an active lone electron pair (LEP) on the Sb atoms and they are interconnected by means of N–H···Cl hydrogen bond originating from [(CH₂)₂(NH(CH₃)₂)₂]²⁺ entities. The polyiodides (I₃ ⁻ and I₅ ⁻) anions form a planer zigzag polymeric chains via I···I linking interactions. These chains are linked to the [SbCl₅]²⁻ anions by a long range contact.     

Synthesis and Crystal Structure of <Emphasis Type="Italic">Tris</Emphasis>-(<Emphasis Type="Italic">N</Emphasis>–<Emphasis Type="Italic">N</Emphasis> dimethyl benzylammonium)-hexachlorobismuthate(III)

Abstract  The salt tris-(N–N dimethyl benzylammonium)-hexachlorobismuthate(III) crystallizes in the triclinic system P1 with unit cell parameters: a = 9.0300(12), b = 9.9220(3), c = 19.575(2) ?, α = 79.955(5), β = 89.952(2), γ = 88.108(6)°, V = 1726.0(3) ?³, Z = 2. The examination of the structure shows an alternate stacking of inorganic layers of hexachlorobismuthate(III) anions and organic layers of [C₆H₅CH₂NH(CH₃)₂]⁺ cations parallel to the a-axis. The cohesion forces of the packing of N–N dimethyl benzylammonium units in the layer and between two adjacent layers are provided by hydrogen bonds (N–H⋯Cl) and van der Waals contacts. Index Abstract  The examination of the structure shows a layer arrangement parallel to the a-axis: planes of octahedral anions [BiCl₆]³⁻ alternate with planes of [C₆H₅CH₂NH(CH₃)₂]⁺ cations (Fig. 3). The cohesion forces of the packing of the N–N dimethyl benzylammonium units in the layer and between two adjacent layers are provided by hydrogen bonds (N–H⋯Cl) and van der Waals contacts. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Synthesis,Characterization, and Crystal Structure of <Emphasis Type="Italic">N</Emphasis>-<Emphasis Type="Italic">p</Emphasis>-Bromophenyl-<Emphasis Type="Italic">N</Emphasis>′-Phenylacetylthiourea

Abstract   N-p-bromophenyl-N′-phenylacetylthiourea was characterized by elemental analysis, IR and ¹H NMR etc. Single crystal structure of the title compound was determined on X-ray diffraction instrument. The title compound crystallizes in monoclinic space group c2/c, with a = 21.442(5) ?, b = 12.208(2) ?, c = 11.955(2) ?, β = 109.375(4)°, and D _calc = 1.571 g/cm³ for Z = 8. An intermolecular hydrogen bond N–H···S which links two thiourea molecules as a dimer and an offset face-to-face π–π stacking interaction were observed in the title compound. The strong non-covalent interaction influences the conformation and property of thiourea derivatives. Index Abstract  The title compound, N-p-bromophenyl-N′-phenylacetylthiourea, was synthesized by the treatment of phenylacetyl chloride with 4-bromoaniline and its crystal structure determined. Single crystal X-ray diffraction analysis reveals that hydrogen bonds and face-to-face π–π stacking interactions have strong influence on the conformation and molecular stacking of the title compound.      

Intermolecular Hydrogen Bonds and the Supramolecular Structure of <Emphasis Type="Italic">N</Emphasis>,<Emphasis Type="Italic">N</Emphasis>′-Bis(<Emphasis Type="Italic">p</Emphasis>-tolylsulfonyl)diethylenetriamine

Abstract  The title compound N,N′-bis(p-tolylsulfonyl)diethylenetriamine (1) was synthesized and its crystal structure determined by X-ray diffraction. Adjacent molecules of 1, symmetrically related through a c-glide, are linked by alternating hydrogen bonds that form molecular chains along [0 0 1]. Two molecular chains occur in each unit cell and pack to form alternating layers in a three-dimensional supramolecular structure. The compound crystallizes in the Pca2₁ space group stabilized by the inclusion of solvent dichloromethane molecules in structural voids between molecules of 1. The dichloromethane molecules are related through a twofold screw rotation axis and are not disordered. Index Abstract  Intermolecular hydrogen bonds involving sulfonamide moieties of title compound afford a supramoleular structure that accommodates the inclusion of dichloromethane in alternating layers.      

Synthesis and Structure Determination of <Emphasis Type="Italic">S</Emphasis>,<Emphasis Type="Italic">S</Emphasis>′-(Naphthalen-2-ylmethyl sulfanyl (1-<Emphasis Type="Italic">p</Emphasis>-tolyl-ethylidene) Hydrazine

Abstract  

S,S′-(Naphthalen-2-ylmethyl sulfanyl (1-p-tolyl-ethylidene) hydrazine (SNM4MA) was prepared by the condensation of S-napthalen-2-ylmethyldithiocarbazate (SNMDTC) and 4-methylacetophenone. Yellow needles of SNM4MA were obtained upon slow evaporation of a 50:50 mixture of acetonitrile and DMSO over a period of weeks. The compound crystallizes in the monoclinic system with the space group C 2/c and Z = 4. The unit cell parameters are a = 7.0221(2) ?, b = 22.8428(6) ?, c = 23.5127(6) ? with β = 94.0222(13)°. Single crystal X-ray analysis shows that the molecule has crystallographic two-fold rotational symmetry coincident with the S–S bond. The title compound exists as a trans–cis conformer in which the naphthalene group is trans with respect to the thione sulfur while the benzyl group adopts a cis geometry. ¹³C and ¹H spectra confirm that the dimeric nature is retained in DMSO solution.     

Synthesis and Crystal Structure of <Emphasis Type="Italic">N</Emphasis>′-(6-Chloropyridin-3-formyl)-<Emphasis Type="Italic">N</Emphasis>-<Emphasis Type="Italic">t</Emphasis>-Butyl Urea

Abstract The crystal structure of N′-(6-chloropyridin-3-formyl)-N-t-butyl urea, C₁₁H₁₄ClN₃O₂, has been established, and which belongs to monoclinic crystal system, space group Pn with unit cell dimensions a = 9.335(3) ?, b = 12.715(3) ?, c = 21.813(6) ?, β = 95.417(6)°, V = 2577.6(12) ?³ and Z = 8. An intramolecular N–H···O hydrogen bond forms a six-membered ring in the central part of the molecule. Both two N–H atoms of single unit participate in intermolecular hydrogen bonds and an intramolecular hydrogen bond, respectively. Index Abstract The crystal structure ofN′-(6-chloropyridin-3-formyl)-N-t-butyl urea, C₁₁H₁₄ClN₃O₂, has been established, and which belongs to monoclinic crystal system withZ = 8, space group Pn.      

Solid-state Spectroscopic and Structural Investigation of <Emphasis Type="Italic">cis</Emphasis>-(CH<Subscript>3</Subscript>)<Subscript>2</Subscript>Au(<Emphasis Type="Italic">O</Emphasis>,<Emphasis Type="Italic">O</Emphasis>′-acac)

Abstract  The structure of cis-(CH₃)₂Au(O,O′-acac) was investigated by single-crystal X-ray diffraction. It crystallizes in the orthorhombic space group Cmca with unit cell dimensions a = 6.7831(13) ?, b = 15.080(3) ?, c = 18.073(3) ? and α = β = γ = 90°. The molecule is planar but lacks a C₂ axis in the solid-state, with two Au–C bond lengths that differ by 0.078(21) ? due to crystal packing effects. The inequivalence of the crystallographic carbon positions is evident in the solid-state ¹³C CP-MAS NMR spectrum, which was recorded at low temperature due to the thermal sensitivity of the compound during magic-angle spinning. Head-to-tail stacking, which creates short intermolecular paths, was reproduced computationally in a dimer model. Graphical Abstract   Solid-state Spectroscopic and Structural Investigation of cis -(CH ₃ ) _Au 2 ( O , O ′-acac) Miyako Hisamoto • Swarup Chattopadhyay • Juergen Eckert • Guang Wu • Susannah L. Scott In the solid state, cis-(CH₃)₂Au(O,O′-acac) has no C₂ axis, two different Au–C bond lengths (1.960, 2.038 ?; Δd = 0.078(21) ?) and a close Au–C…C–Au contact; these features give rise to additional features in the ¹³C CP-MAS NMR spectrum.     

Synthesis,spectroscopic and structural studies of <Emphasis Type="Italic">N</Emphasis>-(1<Emphasis Type="Italic">H</Emphasis>-benzimidazol-2-yl)-<Emphasis Type="Italic">N</Emphasis>′-benzyl propionamidine

N-(1H-Benzimidazol-2-yl) propionimidic acid ethyl ester (1) reacts with benzylamine to yield the corresponding N-(1H-Benzimidazol-2-yl)-N′-benzyl proponamidine (2). The structure and conformation of the amidine 2 were determined by ¹H and ¹³C NMR and X-ray diffraction. The product crystallizes in monoclinic system with space group P2₁/c, a = 10.7913 ?, b = 15.5164 ?, c = 9.1130 ?, β = 108.378° and Z = 4. In the crystal there are two N–HN hydrogen bonds, the first is intramolecular H-Bond links H4 to N1; the second one is intermolecular and it links H2 to N3 of a second molecule leading to inversion-related dimers. The X-ray results were compared with those obtained by semi-empirical and ab-initio calculations.     

Crystal Structure of Unsymmetrically <Emphasis Type="Italic">N</Emphasis>-nor-dehydroabietyl-<Emphasis Type="Italic">N</Emphasis>′-isopropyl Urea

Abstract  

The title compound (C₄₆H₇₂N₄O₂, M _r  = 713.08) [systematic name: 1-isopropyl-3-((1R,4aS,10aR)-7-isopropyl-1, 4a-dimethyl-1,2,3,4,4a,9,10,10a-octahydrophenanthren-1-yl)urea] is a new derivative of dehydroabietic acid. It crystallized in the orthorhombic system, space group P2₁2₁ 2₁ with cell dimensions of a = 9.5950(19) ?, b = 18.740(4) ?, c = 24.654(5) ?, V = 4,433.0(16) ?³, Z = 4, D _c  = 1.068 g/cm³, λ = 0.71073 ?, μ = 0.07 mm⁻¹, F(000) = 1,568, final R = 0.0777 and wR = 0.1731 for 2,048 observed reflections with I > 2σ(I). Two crystallorgraphically independent molecules with different conformations co-exist in the structure. Each molecule exhibit classic tricyclic hydrophenanthrene structure, the two cyclohexane rings form a trans ring junction with chair and half-chair conformations, respectively. The crystal is stabilized by intermolecule hydrogen bonds and the molecules are in a head–tail zigzag arrangement.     

C–H⋅<Emphasis Type="Italic">s</Emphasis>O hydrogen bond networks in <Emphasis Type="Italic">E</Emphasis>- and Z-unsaturated esters of C-glycosides

Methyl E(Z)-4,7 anhydro-5-benzamido-6,8-di-O-benzoyl-2,3,5-trideoxy-d-allo-oct-2-enoate have been synthesized like intermediates and isolated as single crystals during the synthesis of pyrazole-related C nucleosides as synthetic product with cytotoxic activity.¹ Crystal structures of E(Z) isomers were determined by X-ray analysis. E isomer crystallizes in the triclinic crystal system, space group P1, a = 5.319(1) Å, b = 10.758(2) Å, c = 12.229(2) Å, α = 72.38(2)^∘, β = 89.97(2)^∘, γ = 87.07(2)^∘, D_x = 1.320 Mgm⁻³ and Z isomer in the orthorhombic crystal system, space group P2₁2₁2₁, a = 5.1297(13) Å, b = 19.667(5) Å, c = 25.871(6) Å, D_x = 1.348 Mgm⁻³. The molecular structure was solved by direct method on the basis of 2609 and 2727 unique reflections recorded at the temperature 293 K (E-isomer) and 173 K (Z-isomer) up to the final R-factor 0.0378 and 0.0435, respectively. C–H⋅sO contact networks were analyzed and the correlation established between the existence of the weak C–H⋅sO hydrogen bonds and the melting point of the single crystals.     

Crystal and molecular structure of bis-(1-<Emphasis Type="Italic">tert-</Emphasis>butyl-1,2-dibenzoylhydrazine)-<Emphasis Type="Italic">N</Emphasis>,<Emphasis Type="Italic">N</Emphasis>′-sulfide

The structure of the title compound bis-(1-tert-butyl-1,2-dibenzoylhydrazine)-N,N- sulfide was determined by X-ray single crystal diffraction. The crystal belongs to monoclinic, space group P2(1)/c with the following crystallographic parameters: a = 14.681(7) Å, b = 14.501(7) Å, c = 16.535(8) Å, = 90°, = 109.173(9)°, = 90°, V = 3325(3) Å ³, z = 4, Dx = 1.244 mg/m³, F(000) = 1320, T = 293(2) K, 1.47° 25.00°, the final R factor: R₁ = 0.0584, wR₂ = 0.1111. The bond distances and angles in the tert-butyl groups are different, that can interpret its ¹H NMR spectra, which are very unusual for the absorption of –CMe₃ being multiple.     

Simulation of ion transport in layered cuprates La<Subscript>2 − <Emphasis Type="Italic">x</Emphasis></Subscript>Sr<Subscript><Emphasis Type="Italic">x</Emphasis></Subscript>CuO<Subscript>4 − <Emphasis Type="Italic">δ</Emphasis></Subscript>

The processes of oxygen diffusion in La_{2 ? x} Sr _x CuO_{4 ? δ} phases have been simulated for the first time by the molecular-dynamics method. Calculations were performed for the temperature range 300–2500 K. The behavior of the radial pair correlation functions, which characterize the degree of order of O1 ions in CuO₂ layers, indicates that O^2? anions form a weakly correlated subsystem within a CuO₂ layer. To quantitatively confirm the conclusions about the predominantly two-dimensional character of ion transport and different mobilities of O1 and O2 particles in the cuprates under study, the pair oxygen diffusion coefficients in the La_{2 ? x} Sr _x CuO_{4 ? δ} lattice were calculated. It is shown that oxygen diffusion occurs through the conventional hopping mechanism mainly in CuO₂ layers; correspondingly, the diffusion coefficient for equatorial ions (O1) exceeds that for apical oxygen anions (O2) by an order of magnitude. The motion of oxygen anions was traced at the microscopic level through analysis of the particle transport trajectories. It has been proven for the first time that diffusion of O1 ions in the ab plane in a nonstoichiometric LaSrCuO_3.61 sample occurs through jumps to the nearest position or along CuO₂ layers; in a more complicated way, it may occur through unoccupied O2 lattice sites.     

X-ray Structure Investigation of 20-<Emphasis Type="Italic">O</Emphasis>-β-<Emphasis Type="SmallCaps">d</Emphasis>-glucopyranosyl-20(<Emphasis Type="Italic">S</Emphasis>)-protopanaxadiol

Abstract  20-O-β-d-glucopyranosyl-20(S)-protopanaxadiol (I) has been isolated as a metabolite of ginseng saponins by Paecilomyces bainier. The crystal structure of (I) was also investigated by single crystal X-ray diffraction analysis. It crystallizes in the monoclinic space group P2₁, with a = 15.99 2 (3) ?, b = 11.960 (19) ?, c = 20.127 (3) ?, β = 101.85 (4)°, and V = 3767.5 (11) ?³, Z = 4, R _int = 0.1129, ωR(F ²) = 0.1749, F(000) = 1,448. The title compound is a dammarane-type triterpenoid, and the four rings of this compound connect with each other in trans characteristics,with the three-six-membered rings in chair conformation and the five-membered ring adopting envelope one. A β-d-glucopyranosyl group and a 2-methyl-2-pentenyl group connect to C20 of S configuration. The space symmetrical motif is adopted and each packing unit-cell contains two symmetrical compound (I) molecules and four H₂O molecules. The hydrogen-bonding (both intra- and inter-molecular) interactions play a major role in this structural association. Index Abstract  In the present paper, the single-crystal structure of 20-O-β-d-glucopyranosyl-20(S)-protopanaxadiol was determined by X-ray analysis      

Structural Report for 2,5-Bis(trifluoroacetyl)cyclohexane-1,4-dione and <Emphasis Type="Italic">o</Emphasis>,<Emphasis Type="Italic">o</Emphasis>′-bis(trifluoroacetyl)-<Emphasis Type="Italic">p</Emphasis>-cresol

Abstract  

The crystal structures of 2,5-bis(trifluoroacetyl)cyclohexane-1,4-dione (1) and o,o′-bis(trifluoroacetyl)-p-cresol (2) is reported. The first compound crystallizes in monoclinic space group P2₁/n with a = 6.5040(10), b = 10.1610(10), c = 8.2420(10) ?, β = 91.690(10)° and V = 0.54445(12) nm³. Double enolization (U-structure) with a considerable electron density delocalization in the enolone backbone was established in this case. Phenol 2 crystallizes in triclinic space group P-1 with a = 7.0690(10), b = 9.4890(10), c = 9.8190(10) ?, α = 103.720(10), β = 110.760(10), γ = 102.150(10)° and V = 0.56598(12) nm³. In contrast to CDCl₃ solution, a “bifurcate” structure of 2 with jumping OH proton is quenched: only one of both trifluoroacetyl moieties is bonded by intramolecular hydrogen bond.     

Crystal structure and physical characterization of <Emphasis Type="Italic">N</Emphasis>-(3,3-dimethylbutyl)-<Emphasis Type="SmallCaps">l</Emphasis>-α-aspartyl-<Emphasis Type="SmallCaps">l</Emphasis>-phenylalanine,the hydrolysis product of neotame

The hydrolysis product of neotame, N-(3,3-dimethylbutyl)-l--aspartyl-l-phenylalanine (DMBAP), was crystallized from water as an anhydrate with a melting point at 197C with decomposition. Its crystal structure was determined by single crystal X-ray diffractometry. The crystal is orthorhombic with space group P2₁2_₁2₁ with Z=4 and one molecule per asymmetric unit. The cell constants are a=5.520 (2) Å, $b=10.608$ (5) Å and c= 31.92 (2) Å. The ¹³C solid-state nuclear magnetic resonance spectrum of DMBAP is compared with those of neotame monohydrate and neotame methanol solvate.     

Synthesis and Crystal Structure of New <Emphasis Type="Italic">N</Emphasis>,<Emphasis Type="Italic">N</Emphasis>′-Bis[1-(4-methoxyphenyl)-5-methyl-1<Emphasis Type="Italic">H</Emphasis>-1,2,3-triazole-4-carbonyl]hydrazide

Abstract  The N,N′-bis[1-(4-methoxyphenyl)-5-methyl-1H-1,2,3-triazole-4-carbonyl]hydrazide 6 was synthesized from aryl triazole acids and its structure is established by MS, IR, and ¹H NMR spectral data. Compound 6, C₂₂H₂₂N₈O₄, Mr = 462.48, crystallizes in the monoclinic space group P2(1)/c with unit cell parameters a = 15.3451(8), b = 8.6486(4), c = 16.8502(9) ?, α = 90.00, β = 95.731(2), γ = 90.00o, V = 2225.1(2) ?³, Z = 4, and Dx = 1.381 mg m⁻³. The final R was 0.0450. The four aromatic rings are close to linear because of N···H–N hydrogen bonds. Index Abstract  Synthesis and crystal structures of N,N′-bis[1-(4-methoxyphenyl)-5-methyl-1H-1,2,3-triazole-4-carbonyl]hydrazide Heng-Shan Dong, Yan-Fei, Wang, Hong-Ru Dong, Bin, Wang, Bin Quan N,N′-Bis[1-(4-methoxyphenyl)-5-methyl-1H-1,2,3-triazole-4-carbonyl]hydrazide was synthesized.      

Cationic transport mechanism in α-Ag<Subscript>1 − <Emphasis Type="Italic">x</Emphasis></Subscript>Cu<Subscript><Emphasis Type="Italic">x</Emphasis></Subscript>I(0 < <Emphasis Type="Italic">x</Emphasis> < 0.25): Molecular-dynamics simulation

The structural and transport characteristics of an Ag_{1 ? x} Cu _x I(0 < x < 0.25) solid solution have been simulated by the molecular-dynamics method. It is found that the cation diffusion coefficient decreases with increasing copper concentration; this correlation is in agreement with the experimentally observed decrease in ionic conductivity. It is shown that the cationic transport in disordered Ag_{1 ? x} Cu _x I phases is mainly due to the migration of silver cations, whereas the mobility of copper cations is much lower. Cu⁺ cations are found to reside in the 8c positions in a bcc cell; this finding suggests the existence of nanoscale α-CuI regions.     

Crystal structure of Сu<Subscript>2–<Emphasis Type="Italic">m</Emphasis></Subscript>Te (<Emphasis Type="Italic">m</Emphasis> = 0.25)

The Сu₂Te compound has been synthesized by alloying Сu and Te taken in stoichiometric ratios. A Сu₂Te sample has been homogenized by annealing at 773 K for 100 h. A pure copper phase in the form of thin filaments is found to segregate from the synthesized product (4 g) by the end of annealing. It is established by X-ray diffraction analysis that the copper-deficient sample is crystallized into the trigonal system with lattice parameters а = 8.328(1) Å, с = 7.196(1) Å, V = 432.2(1) ų, sp. gr. \(P\overline 3 m1\), Z = 8. The crystal structure is determined and the sample composition Сu_2–m Te (m = 0.25) is refined by the Rietveld method. The three independent copper atoms in the lattice are found to have different coordination numbers: 3, 4, and 5.     

Molecular and crystal structures of mesomorphic aromatic esters: II. The structure of <Emphasis Type="Italic">p</Emphasis>-ethoxyphenyl <Emphasis Type="Italic">p</Emphasis>′-pentylbenzoate

p-Ethoxyphenyl p′-pentylbenzoate (I), which exhibits a mesophase (K 62.6 N 63.3 I), was studied by X-ray diffraction analysis at 120.0 and 296.0 K. In the molecule I, one of the benzene rings is almost coplanar with the carboxy group COO, whereas another benzene ring is twisted with respect to the carboxy group by 65.9°. The geometric parameters of the molecule I are indicative of possible conjugation between the carboxy group and the former benzene ring and the absence of conjugation between this group and the second benzene ring. In the crystal packing, extended molecules I are oriented along the bc diagonal. The mutual orientation of the nearest benzene rings of any two adjacent molecules is T-shaped, which corresponds to a weak C-H...π-type interaction.