Spectroscopic characterization of aminoacetonitrile,its ions and protonated aminoacetonitrile using quantum chemical methods

We present theoretical vibrational and absorption spectra of aminoacetonitrile, its cation, anion, cyanoprotonated, and aminoprotonated aminoacetonitrile. We used second‐order Moller–Plesset perturbation method (MP2) with TZVP basis set to obtain ground state geometries and vibrational spectra. Time dependent density functional theory method was used to obtain absorption spectra. Shifts in vibrational modes for aminoacetonitrile upon ionization and protonation are determined. The C≡N stretching mode which is the most important mode in detection of nitriles in space is more intense in aminoacetonitrile ions and its two protonated form and is less IR active for neutral aminoacetonitrile. The nature of electronic transition for these molecules is identified. All the electronic transitions for neutral aminoacetonitrile and its cation are the σ → σ* electronic transitions, whereas its anion and protonated aminoacetonitrile display the σ → σ* as well as π → π* transitions. © 2010 Wiley Periodicals, Inc. Int J Quantum Chem, 2011     

Method of calculating band shape for molecular electronic spectra

A method for approximating the band shape of molecular electronic transitions based on a single geometric configuration is described. The band shape is modeled using an empirical parameter to estimate the width at half-height for each transition. In addition to generating a shape for allowed transitions, a procedure is developed for approximating the oscillator strength for the symmetry forbidden bands. The results obtained using these two approximations are then compared with experimental spectra and to the results obtained from stochastic methods for simple organic molecules, such as benzene, naphthalene, and the diazobenzenes. © 1998 John Wiley & Sons, Inc. J Comput Chem 19: 781–796, 1998     

Spectroscopic characterization of chloride and pseudohalide ruthenium(II) complexes with 4-(4-nitrobenzyl)pyridine

Chloride, isocyanate and isothiocyanate hydride carbonyl ruthenium(II) complexes of 4-(4-nitrobenzyl)pyridine were synthesized from the precursor complex [RuHCl(CO)(PPh₃)₃] and characterized by IR, NMR, UV–Vis spectroscopy and X-ray crystallography. The electronic structures of the complexes were investigated by means of DFT calculations, based on their crystal structures. The spin-allowed singlet–singlet electronic transitions of the complexes were calculated by time-dependent DFT, and the UV–Vis spectra are discussed on this basis. The emission properties of the complexes were studied at ambient temperature, and the quantum yields of fluorescence, the lifetimes and nature of the excited states are discussed. The chloride and isothiocyanate complexes are practically nonemissive, with quantum yields under 0.01 %. Interpretation of spectra, supported by TD-DFT calculations, indicates that in this energy region, the transitions have MLCT character with admixture of LLCT (chloride and isothiocyanate complexes). The dominant LLCT character was visible in the case of the most emissive (isocyanate) complex. The low values of the lifetimes and quantum yields for these complexes indicate the influence of the metal center in the emission process.     

Synthesis,characterization, and antimicrobial activities of nickel(II) and copper(II) Schiff-base complexes

Ni(II) and Cu(II) metal complexes of simple unsymmetrical Schiff-base ligands derived from salicylaldehyde/5-methylsalicylaldehyde and ethylenediamine or diaminomaleonitrile (DMN) were synthesized. The ligands and their complexes were characterized by elemental analysis, ¹H NMR, FT IR, and mass spectroscopy. The electronic spectra of the complexes show d–d transitions in the region at 450–600 nm. Electrochemical studies of the complexes reveal that all mononuclear complexes show a one-electron quasi-reversible reduction wave in the cathodic region. ESR spectra of the mononuclear copper(II) complexes show four lines, characteristic of square-planar geometry, with nuclear hyperfine spin 3/2. The copper(II) complexes show a normal room temperature magnetic moment value μ _eff = 1.70–1.74 BM which is close to the spin only value of 1.73 BM. Kinetic studies on the oxidation of pyrocatechol to o-quinone using the copper(II) complexes as catalysts were also carried out. The in vitro antimicrobial activity of the investigated compounds was tested against human pathogenic bacterias such as Staphylococcus aureus, Bacillus subtilis, Klebsiella pneumonia, Pseudomonas aeruginosa and Escherichia coli. The antifungal activity was tested against Candida albicans. Generally, the metal complexes have higher antimicrobial activity than the free ligands.     

Electronic absorption spectra of some nicotinamides and nicotinic acids. Molecular orbital treatment

The electronic absorption spectra of the position isomers nicotinamide and isonicotinamide, nicotinic acid, and isonicotinic acid were investigated, together with the spectra of thionicotinamide, N-methyl nicotinamide and nicotinic acid N oxide. Apparent differences in the spectra of the position isomers were interpreted in terms of the torsion angle between the planes of the molecule, the height of the barrier to internal rotation, and the results of molecular orbital (MO) calculations. The largest perturbation effect was observed in the case of thionicotinamide whereas the smallest effect was observed in the case of nicotinic acid N oxide. MO calculations have indicated the existence of overlapping transitions. The observed transitions proved to be π-π* transitions, none of the n-π* was observed. © 1997 John Wiley & Sons, Inc. Int J Quant Chem 64 : 689–701, 1997     

Applying Unconventional Spectroscopies to the Single-Molecule Magnets,Co(PPh3)2X2 (X=Cl,Br, I): Unveiling Magnetic Transitions and Spin-Phonon Coupling

Large separation of magnetic levels and slow relaxation in metal complexes are desirable properties of single-molecule magnets (SMMs). Spin-phonon coupling (interactions of magnetic levels with phonons) is ubiquitous, leading to magnetic relaxation and loss of memory in SMMs and quantum coherence in qubits. Direct observation of magnetic transitions and spin-phonon coupling in molecules is challenging. We have found that far-IR magnetic spectra (FIRMS) of Co(PPh₃)₂X₂ ( Co-X ; X=Cl, Br, I) reveal rarely observed spin-phonon coupling as avoided crossings between magnetic and u-symmetry phonon transitions. Inelastic neutron scattering (INS) gives phonon spectra. Calculations using VASP and phonopy programs gave phonon symmetries and movies. Magnetic transitions among zero-field split (ZFS) levels of the S=3/2 electronic ground state were probed by INS, high-frequency and -field EPR (HFEPR), FIRMS, and frequency-domain FT terahertz EPR (FD-FT THz-EPR), giving magnetic excitation spectra and determining ZFS parameters (D, E) and g values. Ligand-field theory (LFT) was used to analyze earlier electronic absorption spectra and give calculated ZFS parameters matching those from the experiments. DFT calculations also gave spin densities in Co-X , showing that the larger Co(II) spin density in a molecule, the larger its ZFS magnitude. The current work reveals dynamics of magnetic and phonon excitations in SMMs. Studies of such couplings in the future would help to understand how spin-phonon coupling may lead to magnetic relaxation and develop guidance to control such coupling.     

A DFT/TDDFT study of porphyrazines and phthalocyanine oxo‐titanium derivatives as potential dyes in solar cells

Density functional theory and time dependent density functional theory calculations at the level of LDA/BP86/TZ2P were performed systematically on several Ti(IV) complexes of porphyrazines and one phthalocyanine. We performed an analysis of the frontier molecular orbitals of the ground state electronic structures and also discuss in particular the good concordance of our results with the experimental data, which affords to predict the geometrical and optical properties of new complexes ( 3 , 4 , and 7 ). We also emphasize the characterization of the UV–vis absorption spectra and propose transitions that contribute to the Q and B bands. Some useful calculated properties in complexes 2 , 3 , and 7 , like: high light absorption in the visible region of the spectra, transitions involved in these bands with a determined direction, charge separation, bigger highest occupied molecular orbital–lowest unoccupied molecular orbital (HOMO‐LUMO) gaps than complexes 4 and 5 , and the energy of their LUMO orbitals (that are higher than the lowest energy level of the conduction band of the TiO₂) indicate that system complexes 2 , 3 , and 7 could act as light‐harvesting sensitizers for dye‐sensitized solar cells (DSCs). These proposals were made using a model of the previously experimentally known phthalocyanine, which was used as sensitizer in DSCs devices, comparing its electronic properties with the herein proposed sensitizers. © 2011 Wiley Periodicals, Inc. Int J Quantum Chem, 2011     

Synthesis and characterization of two acetato-bridged dinuclear copper(II) complexes with 4-bromo-2-((4 or 6-methylpyridin-2-ylimino)methyl)phenol as ligand

The synthesis and characterization of two new acetato-bridged dinuclear copper(II) complexes are described. Both compounds have the general formula [Cu(L)(µ-O₂C–CH₃)]₂, in which L = 4-bromo-2-((4-methylpyridin-2-ylimino)methyl)phenol or 4-bromo-2-((6-methylpyridin-2-ylimino)methyl)phenol. The title compounds consist of dinuclear units with bridging acetato groups and a ligand linked to each copper via the phenol oxygen and nitrogen. Both compounds were synthesized in a one-step reaction and characterized by elemental analysis, Fourier transform infrared (FTIR), electron spin resonance (ESR), and electronic spectra and by room temperature magnetic moments. The compounds exhibit antiferromagnetic interactions at room temperature. UV-Vis spectra show four absorptions attributed to d–d transitions of copper, ligand → metal charge transfer and π → π* or n → π* transitions of ligand. The FTIR spectra indicate a Cu₂O₄C₂ ring vibration. Both complexes show room temperature magnetic moments of about 1.6 B.M. per copper. The X-band ESR studies indicate a weak half-field band, characteristic of the Cu(II)–Cu(II) dimer, observed at 1552 and 1558 G for the complexes, strongly suggesting that the hyperfine structure arises from a spin triplet species. The spectra of frozen samples in DMSO or DMF at liquid nitrogen temperature show a typical Δm = 1 transition.     

Intrakonfigurations‐, Trip‐Multiplett‐ sowie anomal polarisierte A1gund A2g‐Übergänge in elektronischen und vibratorischen Resonanz‐Raman‐Spektren von (spinentarteten) trans‐Di(cyano)phthalocyaninatorhenaten

Intraconfigurational, Trip‐Multiplet, and Anomalously Polarised A_1g and A_2g Transitions in Electronic and Vibrational Resonance Raman Spectra of (Spin‐Degenerate) trans ‐Di(cyano)phthalocyaninatorhenates Brown bis(tetra(n‐butyl)ammonium) trans‐di(cyano)phthalocyaninato(2‐)rhenate(II) ( 1 ) is prepared by melting bis(phthalocyaninato(2‐)rhenium(II)) with tetra(n‐butyl)ammonium cyanide. According to electrochemical data, 1 is oxidised by iodine to yield blue tetra(n‐butyl)ammonium trans‐di(cyano)phthalocyaninato(2‐)rhenate(III) ( 2 ), whose cation exchange in the presence of bis(triphenylphosphine)iminium salts has been confirmed by x‐ray structure determination. 1 and 2 dissolve without dissociation of the cyano ligands in conc. sulfuric acid. Dilution with cold water precipitates blue trans‐di(cyano)phthalocyaninato(2‐)rhenium(III) acid. 1 and 2 are oxidised by bromine yielding violet trans‐di(cyano)phthalocyaninato(1‐)rhenium(III). Oxidation of 2 with dibenzoylperoxide and N‐chlorsuccinimide is described. 1 and 2 are characterised by polarised resonance Raman(RR) spectra, FIR/MIR spectra, and UV‐Vis‐NIR spectra. Due to a Kramers degenerate ground electronic state of low‐spin Re^II, a polarisation anomaly of the totally symmetric vibrations a_1g at 598 and 672 cm^–1 with depolarisation ratios ρ_l > 3 is observed in the RR spectra of 1 . Weak bands in the unusual UV‐Vis‐NIR spectrum of 1 , starting at 10200 cm^–1, are attributed to trip‐multiplet (TM) transitions. An electronic RR effect is detected for 2 . The selectively enhanced anomalously polarised line at 1009 cm^–1 with ρ_l ≈ 15 and the (de)polarised lines between 1688 and 2229 cm^–1 are attributed to intraconfigurational transitions A_1g → A_2g > A_1g, B_1g, B_2g, E_g arising from the ³T_1g ground electronic state of low‐spin Re^III split by spin‐orbit coupling and low symmetry (D ). Some of their vibronic bands are detected in the IR spectrum between 1900 and 4000 cm^–1. B and Q transitions of 2 at 16700 and 31900 cm^–1, respectively, as well as eight weak TM transitions are observed between 5050 and 26100 cm^–1.     

Schwingungs- und Elektronenspektren der Dekahalogenodiosmate(IV), [Os2X10]2−, X  Cl,Br

Vibrational and Electronic Spectra of Decahalogenodiosmates(IV), [Os₂X₁₀]^2?, X ? Cl, Br The IR and Raman spectra of the edge-sharing bioctahedral anions [Os₂X₁₀]^2?, X ? Cl, Br, are assigned according to point group D_2h. The bands are found in three characteristic regions; at high wavenumbers stretching vibrations with terminal ligands v(OsCl_t): 365–280, v(OsBr_t): 235–195; in a middle region with bridging ligands v(OsCl_b): 270–240, v(OsBr_b): 175–165 cm^?1; the deformation bands are observed at distinct lower frequencies. The electronic spectra of the dimers show intraconfigurational transitions near 2000, 1000, and 600 nm which by position and intensity correspond to those of the monomeric complexes. They are therefore discussed separately for both metal centers according to C_2v symmetry. Two additional band systems are presumable pair transitions arising from interactions of the central ions within the dimeric complexes. Due to the different bonding strength of terminal or bridging ligands the intensive charge transfer bands are shifted by 3000–4000 cm^?1 bathochromicly or by 2000–3000 cm^?1 hypsochromicly compared with the hexahaloosmates(IV).     

IR-IR-UV hole-burning: conformation specific IR spectra in the face of UV spectral overlap

A new technique, IR-IR-UV hole-burning, is reported for obtaining conformation specific IR spectra when the electronic spectra are too closely overlapped to obtain clean spectra free from interference from other conformations via standard ion dip or fluorescence dip methods. The 4'-aminobenzo-15-crown-5 ether-(HDO) complex is used as an example, on which the method was applied to prove the presence of two conformations having overlapped electronic spectra and to assign IR transitions belonging to the same conformation.     

Synthesis, characterization and spectra studies on Zn(II) and Cu(II) complexes with thiocarbamide ligand containing Schiff base group

The ligand of 4-phenyl-1-(1-phenylethylidene)thiosemicarbazide (HL) and its metal complexes of ZnL₂ (1) and CuL₂ (2) have been synthesized. Elemental analysis, IR and X-ray single crystal diffraction characterizations for 1 and 2 have been carried out. In the complexes 1 and 2, the central metallic ions Zn²⁺ and Cu²⁺, coordinate with two deprotonated ligands, L⁻, respectively and adopt distorted tetrahedral geometries. The thermal analyses result shows that the two complexes undergo two similar decomposition processes because of their similar geometric configurations. For the two complexes, UV–Vis spectra have been measured and DFT calculations at B3LYP/LANL2DZ level of theory prove that the electronic spectra of 1 are corresponding with intraligand electronic transitions, and the electronic spectra of 2 are attributed to intraligand electronic transitions as well as d–d electronic transitions. Fluorescence spectra measurements indicate that the complex of 1 emits stronger fluorescence than the ligand of HL, and the complex 2 does not emit fluorescence at all. Electrochemical analyses reveal that both the oxidation peak currents and the reduction peak currents of 1 and 2 are stronger than those of the ligand, respectively.     

Oxidative polymerization of phenylenediamines catalyzed by horseradish peroxidase

Ortho-, meta-, and para-phenylenediamines were polymerized using hydrogen peroxide as an oxidant and horseradish peroxidase as a catalyst in mixed solvents of 1,4-dioxane and water. The yield of the polymers was strongly dependent on solvent composition, and maximum yields were obtained at 15–30% 1,4-dioxane. The analysis of circular dichroic spectra of the enzyme suggested that enzyme structure was significantly modified at high 1,4-dioxane contents, which may be responsible for the decrease of catalytic activity of the enzyme. On the basis of IR and electronic spectra of the polymers, it was considered that o- and p-phenylenediamine polymers retain disubstituted benzene nuclei, which suggests that the polymerization proceeded mainly via N—N coupling. © 1998 John Wiley & Sons, Inc. J. Polym. Sci. A Polym. Chem. 36: 2593–2600, 1998     

Synthesis,Characterization, Self‐Assembly,Gelation, Morphology and Computational Studies of Alkynylgold(III) Complexes of 2,6‐Bis(benzimidazol‐2′‐yl)pyridine Derivatives

A novel class of alkynylgold(III) complexes of the dianionic ligands derived from 2,6‐bis(benzimidazol‐2′‐yl)pyridine (H₂bzimpy) derivatives has been synthesized and characterized. The structure of one of the complexes has also been determined by X‐ray crystallography. Electronic absorption studies showed low‐energy absorption bands at 378–466 nm, which are tentatively assigned as metal‐perturbed π–π* intraligand transitions of the bzimpy^2? ligands. A computational study has been performed to provide further insights into the nature of the electronic transitions for this class of complexes. One of the complexes has been found to show gelation properties, driven by π–π and hydrophobic–hydrophobic interactions. This complex exhibited concentration‐ and temperature‐dependent ¹H NMR spectra. The morphology of the gel has been characterized by transmission electron microscopy (TEM) and scanning electron microscopy (SEM).     

An infrared investigation of formamide,acetamide, and thiocetamide in the vapour phase: Inversion of the amino group

The IR spectra (900–100 cm^?1) of formamide, acetamide, and thioacetamide in the vapour phase are reported. In the three compounds, the same 5 amino-inversional transitions are assigned, and potential functions for the inversion mode are proposed and discussed.     

Synthesis,structures, and property studies on Zn(II), Ni(II), and Cu(II) complexes with a Schiff base ligand containing thiocarbamide group

A Schiff base ligand containing thiocarbamide group of 4-phenyl-1-(4-methoxyl-1-phenylethylidene)thiosemicarbazide (HL) and its three mononuclear metal complexes of ZnL₂ (1), NiL₂ (2), and CuL₂ (3) have been synthesized. Elemental analysis, IR, and X-ray single crystal diffraction characterizations for the ligand and the three complexes have been carried out. In the three complexes, the central metallic ions of Zn²⁺, Ni²⁺, and Cu²⁺ coordinate with two deprotonated ligands of L⁻, respectively. In 1, Zn²⁺ ion adopts a distorted tetrahedral geometry, while in 2 and 3, both the Ni²⁺ and Cu²⁺ ions possess distorted square planar configurations. For the four compounds, UV–Vis spectra have been measured and DFT calculations at B3LYP/LANL2DZ level of theory prove that the electronic spectra of HL and 1 are corresponding with electronic transitions of n → π* and π → π* in the ligand itself and the electronic spectra of 2 and 3 are attributed to intraligand electronic transitions as well as d–d electronic transitions. Electrochemical investigations reveal that the different metal–ligand interactions have changed the peak shapes and peak locations, which are corresponding with the DFT-B3LYP/LANL2DZ calculational results. Fluorescence spectra measurements indicate that the ligand emits purple fluorescence and the complex 1 emits stronger blue fluorescence, while the complexes 2 and 3 quench fluorescence. The thermal analyses result show that the three complexes undergo two similar decomposition processes because of their similar geometric configurations.     

Dynamics of Electronically Excited Metal Atoms (Zn and Cd) in Rare Gas Matrices: Simulation of Multiple-band Emission using Molecular Dynamics with Quantum Transitions

Molecular dynamics with quantum transitions approach is employed to simulate the spectroscopic characteristics of the ¹P₁↔¹S₀ transitions in atomic zinc and cadmium in order to gain insight into the excited state behavior of these atoms isolated in solid rare gases neon, argon, and krypton. The absorption and emission spectra are simulated. Non-radiative processes play a fundamental role in the transfer of population among the three electronic states initially accessed in absorption. Three distinct relaxation pathways were identified. Two of these are related to the dynamical modes described in previous works [McCaffrey and Kerins, J. Chem. Phys. 106 , 7885 (1997); Kerins and McCaffrey, J. Chem. Phys. 109 , 3131 (1998)] in which the system evolves to form a square planar configuration around the metal atom. The third distinct pathway involves motion on a hexagonal close packed plane. The temperature dependence of complex formation was also determined for the three relaxation pathways.     

Calculation of the Vibrationally Resolved,Circularly Polarized Luminescence of d‐Camphorquinone and (S,S)‐trans‐β‐Hydrindanone

Circularly polarized luminescence (CPL), the differential emission of left‐ and right‐handed circularly polarized light from a molecule, is modeled by using time‐dependent density functional theory. Calculations of the CPL spectra for the first electronic excited states of d‐camphorquinone and (S,S)‐trans‐β‐hydrindanone under the Franck–Condon approximation and using various functionals are presented, as well as calculations of absorption, emission, and circular dichroism spectra. The functionals B3LYP, BHLYP, and CAM‐B3LYP are employed, along with the TZVP and aug‐cc‐pVDZ Gaussian‐type basis sets. For the lowest‐energy transitions, all functionals and basis sets perform comparably, with the long‐range‐corrected CAM‐B3LYP better reproducing the excitation energy of camphorquinone but leading to a blue shift with respect to experiment for hydrindanone. The vibrationally resolved spectra of camphorquinone are very well reproduced in terms of peak location, widths, shapes, and intensities. The spectra of hydrindanone are well reproduced in terms of overall envelope shape and width, as well as the lack of prominent vibrational structure in the emission and CPL spectra. Overall the simulated spectra compare well with experiment, and reproduce the band shapes, emission red shifts, and presence or absence of visible vibrational fine structure.     

Synthesis,structure, and spectroscopy of two benzil-based α-diimine ligands and their palladium(II) complexes

Two α-diimine ligands were prepared in 60–70% yield via p-toluenesulfonic acid-catalyzed condensation reactions from benzil with 4-bromoaniline and with p-anisidine. Palladium(II) complexes were prepared from both ligands in 70–80% yield. X-ray structures were obtained for the ligand prepared from p-anisidine and its palladium(II) complex. A notable feature observed in the former was its unconjugated C–N double bonds, both in the (E)-configuration. The latter structure possessed two molecules of the metal complex in its unit cell, both of which have diimine cores with a degree of conjugation and a nonideal square-planar geometry around palladium caused by the small bite angles (79.61(3) and 79.15(3)°) of the diimine ligands. Solution-phase electronic absorption spectra of the ligands in chloroform have two bands from π→π ^? and n→π ^? transitions at 269–345?nm. Absorption spectra of the complexes in chloroform exhibited bands attributed to ligand-centered transitions that were red-shifted as compared to free ligands. Only the spectrum obtained from a chloroform solution of the palladium(II) complex with the diimine ligand prepared from p-anisidine featured a band at approximately 520?nm, which was assigned to a combination of d _π(Pd)→π ^? and n(Cl)→π ^? transitions.