Facile synthesis of 2′-O-cyanoethyluridine by ring-opening reaction of 2,2′-anhydrouridine with cyanoethyl trimethylsilyl ether in the presence of BF3·Et2O

In this Letter, a facile method for the synthesis of 2′-O-cyanoethyluridine, which is a key intermediate in the synthesis of fully and partially 2′-O-cyanoethylated oligoribonucleotides as well as unmodified oligoribonucleotides, was developed by the ring-opening reaction of 2,2′-anhydrouridine with 2-cyanoethyl trimethylsilyl ether in the presence of BF₃·Et₂O in dimethylacetamide. The 2′-O-cyanoethyluridine 3′-phosphoramidite derivative was converted into the 2′-O-cyanoethyl-4-N-acetylcytidine 3′-phosphoramidite derivative by a series of reactions involving displacement of the 4-(1H-1,2,4-triazol-1-yl)uridine derivative with ammonia followed by acetylation.     

A regioselective three-component reaction for synthesis of novel 1′H-spiro[isoindoline-1,2′-quinazoline]-3,4′(3′H)-dione derivatives

A ring opening and regioselective three-component reaction of isatoic anhydride, isatins, and aromatic or aliphatic primary amines in the presence of catalytic amount of KAl(SO₄)₂·12H₂O (alum) to yield a novel series of 1′H-spiro[isoindoline-1,2′-quinazoline]-3,4′(3′H)-dione is described.     

Novel chiral C1-1′,2′,3′,4′-tetrahydro-1,1′-bisisoquinolines: synthesis, resolution, and applications in catalytic enantioselective reactions

A straightforward synthesis of a structurally constrained C₁-1′,2′,3′,4′-tetrahydro-1,1′-bisisoquinoline 1 is described. Resolution of this compound has been achieved successfully. The preparation of chiral N-alkyl, urea, and thiourea derivatives as potential new chiral ligands, based on the parent compound 1, is reported. Chiral compound 1 induced very good selectivity and yield in the addition of either Et₂Zn (85% ee, 96% yield) or nitromethane (85% ee, 60% yield) to benzaldehyde.     

Synthesis and characterization of two-dimensional fluorinated metal phosphates incorporating 2,2′-bipyridine ligands: M2F2(2,2′-bpy)(HPO4)2(H2O) (M=Fe, Ga)

Two fluorinated metal phosphates, M₂F₂(2,2′-bpy)(HPO₄)₂(H₂O) (M=Fe, Ga), have been synthesized under hydrothermal conditions and characterized by single-crystal X-ray diffraction, thermogravimetric analysis, and magnetic susceptibility. The two compounds are isostructural and crystallize in the triclinic space group , a=7.6595(8)Å, b=10.101(1)Å, c=11.260(1)Å, α=107.555(2)°, β=105.174(2)°, γ=98.975(2)°, V=775.1(2)ų and Z=2 for the Fe compound, and a=7.5816(6)Å, b=9.9943(7)Å, c=11.1742(8)Å, α=107.333(1)°, β=105.014(1)°, γ=99.261(1)° and V=754.2(2)ų for the Ga compound. They are the first fluorinated metal phosphates which incorporate 2,2′-bipyridine ligands. The structure consists of edge-sharing octahedral dimers with the composition Fe₂F₄(H₂O)₂O₄ and discrete FeN₂O₄ octahedra, which are linked into two-dimensional sheets through corner-sharing phosphate tetrahedra. The 2,2′-bpy ligands bind in a bidentate fashion to the metal atoms and project into interlamellar region. The layers are extended into a three-dimensional supramolecular array via π-π stacking interactions of the 2,2′-bpy ligands. Magnetic susceptibility of the iron compound confirms the presence of Fe^III.     

A novel copper diphosphonate complex Cu4(aedp)2(4,4′-bpy)(H2O)4 with three-dimensional framework structure

A novel copper organodiphosphonate complex containing a second ligand 4,4′-bipyridine (4,4′-bpy) based on 1-aminoethylidenediphosphonic acid (H₄aedp), Cu₄(aedp)₂(4,4′-bpy)(H₂O)₄ (1), has been synthesized under hydrothermal conditions. Complex 1 adopts a three-dimensional framework structure assembled from {Cu₄(aedp)₂(H₂O)₄} layers and 4,4′-bpy bridges. Each {Cu₄(aedp)₂(H₂O)₄} unit consists of three crystallographically distinct Cu atoms. The Cu(1) atom has a distorted square pyramidal geometry, whereas the Cu(2) and Cu(3) atoms have a distorted elongated tetragonal octahedral geometry. The magnetic studies indicate that complex 1 show typical antiferromagnetic behaviors at low temperature, which is attributed to the superexchange couplings between Cu(II) centers through μ-O bridge in the phosphonate layers. Crystal data for 1: triclinic, space group , a=8.0931(16), b=13.567(3), c=6.2185(12)Å, α=90.55(3), β=96.97(3), γ=78.50(3)°, V=664.1(2)ų, Z=2.     

Synthesis and structural characterization of two polymorphs of Fe(2,2′-bpy)(HPO4)(H2PO4)

Two polymorphs of an organic-inorganic hybrid compound, Fe(2,2′-bpy)(HPO₄)(H₂PO₄) (1 and 2) (2,2′-bpy=2,2′-bipyridine), have been synthesized by hydrothermal methods and structurally characterized by single-crystal X-ray diffraction, thermogravimetric analysis, and magnetic susceptibility. Crystal data are as follows: Polymorph 1, monoclinic, space group P2₁/n (No. 14), a=10.904(2) Å, b=6.423(1) Å, c=19.314(3) Å, β=101.161(3)°, and Z=4; Polymorph 2, monoclinic, space group P2₁/c (No. 14), a=11.014(1) Å, b=15.872(2) Å, c=8.444(1) Å, β=109.085(3)°, and Z=4. Polymorph 1 adopts a chain structure in which each iron atom is coordinated by two nitrogen atoms from 2,2′-bpy ligand and four phosphate oxygen atoms. These infinite chains are extended into a 3-D supramolecular array via π-π stacking interactions of the lateral 2,2′-bpy ligands. The structure of polymorph 2 consists of the same building units, namely FeO₄N₂ octahedron, HPO₄ and H₂PO₄ tetrahedra, and 2,2′-bpy ligand, which are linked through their vertices forming an undulated sheetlike structure with 4,12 network. Adjacent layers are extended into a 3-D array via π-π stacking interactions of the aromatic groups. Magnetic susceptibility measurement results confirm that the iron atoms in both compounds are present in the +3 oxidation state.     

Synthesis and reactivity of 4″-phenylsulfinimine-avermectin B1 and 4′-phenylsulfinimine-avermectin B1 monosaccharide derivative

A short, efficient synthesis of 4″-(R or S)-4″-deoxy-4″-amino-4″-C substituted avermectin B₁ and 4′-(R or S)-4′-deoxy-4′-amino-4′-C substituted avermectin B₁ monosaccharide 3 and 4 has been developed through the nucleophilic addition of an organometallic reagent to an intermediate phenylsulfinimide 7. These new derivatives of avermectin B₁ exhibited potent, broad spectrum insecticidal activity.     

Studies on bis(1′-ortho-carboranyl)benzenes and bis(1′-ortho-carboranyl)biphenyls

Reactions between the C,C′-dicopper(I) derivative of ortho-carborane and ortho-, meta- and para-diiodobenzene are reported. The reaction with 1,2-C₆H₄I₂ unexpectedly afforded 2,2′-bis(1′-ortho-carboranyl)biphenyl, [HCB₁₀H₁₀CC₆H₄]₂2, whereas reactions with 1,3- or 1,4-C₆H₄I₂ provided alternative routes to 1,3-bis(1′-ortho-carboranyl)benzene 3 and 1,4-bis(1′-ortho-carboranyl)benzene 4, respectively. The crystal structure of the biphenyl derivative 2 revealed significant distortions in the biphenylene framework attributable to the proximity of the two bulky carborane cages. UV absorption spectra and electrochemical data on 2 and 3 showed little electronic communication between the two carborane cages in either, and negligible π-conjugation between the two ortho-phenylene rings in 2. However, substantial evidence was found of electronic communication between the carborane cages via the para-phenylene bridge in 4. B3LYP/6-31G^∗ computations have been carried out on compounds 2 and 4, on 4,4′-bis(ortho-carboranyl)biphenyl 6 and on 1,2-bis(1′-ortho-carboranyl)benzene 7. Those on 2, 4 and 6 show the computed geometries to be in very good agreement with the experimental geometries: those on 7 allowed the reported molecular geometry of this compound to be revised and revealed a long cage C–C bond of 1.725(3) Å.     

The synthesis and characterization of a new 3-D inorganic-organic hybrid framework porous material Zn3(bbdc)3(4,4′-bpy)·2(DMF)·4(H2O)

A new 3-D inorganic-organic hybrid framework microporous material Zn₃(bbdc)₃(4,4′-bpy)·2(DMF)·4(H₂O) (1), which is constructed by coordination of zinc ions with 4,4′-bibenzene-dicarboxylic acid (H₂bbdc) and 4,4′-bipyridine (4,4′-bpy), was obtained at mild synthesis condition. Crystallographic data for the compound (1), C₅₈H₅₄N₄O₁₈Zn₃, orthorhombic, space group Pbcn, a=14. 532(3) Å, b=25.037(5) Å, c=18.184(4) Å, Z=4, V=6616(2) Å³.     

Cascade assembly of N,N′-dialkylbarbituric acids and aldehydes: a simple and efficient one-pot approach to the substituted 1,5-dihydro-2H,2′H-spiro(furo[2,3-d]pyrimidine-6,5′-pyrimidine)-2,2′,4,4′,6′(1′H,3H,3′H)-pentone framework

Cascade assembly of N,N′-dialkylbarbituric acids and aldehydes in the presence of bromine leads to the selective and efficient formation of substituted 1,5-dihydro-2H,2′H-spiro(furo[2,3-d]pyrimidine-6,5′-pyrimidine)-2,2′,4,4′,6′-(1′H,3H,3′H)-pentones in 70-88% yields via a complex cascade process. Spirobarbiturates containing the furo[2,3-d]pyrimidine framework are a class of compounds with interesting pharmacological and physiological activity.     

A two-fold interpenetrating 3D metal-organic framework material constructed from helical chains linked via 4,4′-H2bpz fragments

A 3-connected dia-f-type metal-organic framework compound {[Ag(L)_3/2H₂PO₄]}_n (1) has been synthesized by self-assembly of 4,4′-H₂bpz (L=4,4′-H₂bpz=3,3′,5,5′-tetramethyl-4,4′-bipyrazole) and Ag₄P₂O₇ under hydrothermal conditions. It crystallizes in the tetragonal space group I4₁/acd with a=21.406(4) Å, b=21.406(4) Å, c=36.298(8) Å, Z=32. X-ray single-crystal diffraction reveals that 1 has a three-dimensional framework with an unprecedented alternate left- and right-handed helices structure, featuring a non-uniform two-fold interpenetrated (4.14²) net. Photoluminescent investigation reveals that the title compound displays interesting emissions in a wide region, which shows that the title compound may be a good potential candidate as a photoelectric material.     

Synthesis of functional derivatives of the [3,3′-Co(1,2-C2B9H11)2] anion

A series of various functional derivatives of the cobalt bis(1,2-dicarbollide) anion [8-XCH₂CH₂OCH₂CH₂O-3,3′-Co(1,2-C₂B₉H₁₀)(1′,2′-C₂B₉H₁₁)]⁻ (X=OH, NH₂, and CH(NH₂)COOH) were prepared by the ring-opening reactions of [8-O(CH₂CH₂)₂O-3,3′-Co(1,2-C₂B₉H₁₀)(1′,2′-C₂B₉H₁₁)] with different nucleophiles followed by functional group interconversion reactions. Acidic hydrolysis of [8-NCCH₂CH₂OCH₂CH₂O-3,3′-Co(1,2-C₂B₉H₁₀)(1′,2′-C₂B₉H₁₁)]⁻ resulted in the shorter-chain alcohol [8-HOCH₂CH₂O-3,3′-Co(1,2-C₂B₉H₁₀)(1′,2′-C₂B₉H₁₁)]⁻. Structures of (Bu₄N)[8-AcNHC(COOEt)₂CH₂CH₂OCH₂CH₂O-3,3′-Co(1,2-C₂B₉H₁₀)(1′,2′-C₂B₉H₁₁)] and [8-(1-C₅H₅N)CH₂CH₂OCH₂CH₂O-3,3′-Co(1,2-C₂B₉H₁₀)(1′,2′-C₂B₉H₁₁)] were determined by the single crystal X-ray diffraction method. Perspectives of application of functionalized cobalt bis(1,2-dicarbolide) derivatives in nuclear medicine are discussed.     

A series of metal-organic frameworks constructed with arenesulfonates and 4,4′-bipy ligands

Five transition metal compounds containing arenesulfonates and 4,4′-bipy ligands, namely [Zn₂(N,N′-4,4′-bipy)(N-4,4′-bipy)₂(H₂O)₈](bpds)₂ · 5H₂O (1), [Ag₂(N,N′-4,4′-bipy)₂(bpds)] (2), [Cd(N,N′-4,4′-bipy)(H₂O)₄]₂(4-abs)₄ · 5H₂O (3), [Cu(N,N′-4,4′-bipy) (O-bs)₂(H₂O)₂] · 4H₂O (4), and [Zn(N,N′-4,4′-bipy)₂(H₂O)₂](4,4′-bipy)(bs)₂ · 4H₂O (5) (4,4′-bipy = 4,4′-bipyridine, bpds = 4,4′-biphenyldisulfonate, 4-abs = 4-aminobenzenesulfonate, bs = benzenesulfonate), have been synthesized and characterized by X-ray single crystal diffraction, elemental analyses and TG analyses, in order to investigate the coordination chemistry of arenesulfonates and 4,4-bipy, as well as to construct novel coordination frameworks via mixed-ligand strategy. Compounds 2, 4 and 5 could be obtained via hydrothermal or aqueous reactions. Compound 1 forms a binuclear octahedral metal complex. Compounds 2–4 form polymeric chains. Compound 5 consists of 2D square grids with one intercalated 4,4′-bipy molecule. Weak Ag–Ag interactions are observed in compound 2. These complexes show great structural varieties and there are three different coordination modes observed for both the 4,4′-bipy and the sulfonate ligands.     

Application and details of photoinduced oxidative cyclization of 5-(4′,9′-methanocycloundeca-2′,4′,6′,8′,10′-pentaenylidene)pyrimidine-2,4,6(1,3,5H)-triones and related compounds

As novel methodology for synthesizing the furan ring, a photoinduced oxidative cyclization of 5-(4′,9′-methanocycloundeca-2′,4′,6′,8′,10′-pentaenylidene)pyrimidine-2,4,6(1,3,5H)-triones (7a-c) and related compounds 9a-c was accomplished to give 5,10-methanocycloundeca[4,5]furo[2,3-d]pyrimidine-2,4(1,3H)-dionylium tetrafluoroborates (8a-c⁺·BF₄⁻) and related compounds 2a-c⁺·BF₄⁻, respectively. In the photoinduced oxidative cyclization, the molecular oxygen in air is used as oxidant and the reaction proceeds under mild conditions to give desired products without byproducts, and thus, it is interesting from the viewpoint of the green chemistry. On the reactions of the mono-substituted derivatives 7d,e and 9e,f, the selectivity of the photoinduced cyclizations were reversed as compared with those of the DDQ-promoted oxidative cyclizations. By the NMR monitoring of the reactions of 7a and deuterated compound 7a-D₂ under degassed conditions, the details of the reaction pathway were clarified and rationalized on the basis of the MO calculation by the 6-31G^∗ basis set of the MP2 levels as well.     

Oxidative hydrolysis of a cyclic 1,N-propano-2′-deoxyguanosine, an adduct of 2′-deoxyguanosine with acetaldehyde or crotonaldehyde

The SO₄⁻-oxidation of cyclic 1,N²-propano-2′-deoxyguanosine, chemo- and regioselectively produced in the reaction of 2′-deoxyguanosine with excessive acetaldehyde or crotonaldehyde, resulted in the smooth formation of (4-hydroxy-5-hydroxymethyltetrahydrofuran-2-ylimino)-(4-hydroxy-6-methyltetrahydropyrimidin-2-ylideneamino)acetic acid, 3-(4-hydroxy-5-hydroxymethyltetrahydrofuran-2-yl)-6-methyl-3H-1,3,4,5,8a-pentaazacyclopenta[b]naphthalen-9-one, and 2′-deoxyguanosine even under neutral conditions. The formation of the guanine-ring opened product during the reaction is very interesting and appears to closely relate to the mechanisms for the point-mutations of DNA by these mutagenic and carcinogenic aldehydes.     

The synthesis and crystal structure of vanadium complexes: [VO2(phen)2]·6H2O and [2,2′-(bipy)2VO2](H2BO3)·3H2O

The organic-inorganic hybrid materials vanadium oxide [V^IVO₂(phen)₂]·6H₂O (1) and [(2,2′-bipy)₂V^VO₂](H₂BO₃)·3H₂O (2) have been conventional and hydrothermal synthesized and characterized by single crystal X-ray diffraction, elemental analyses, respectively. Although the method and the ligand had been used in the syntheses of the compounds (1) and (2) are different, they almost possess similar structure. They all exhibit the distorted octahedral [VO₂N₄] unit with organonitrogen donors of the phen and 2,2′-bipy ligands, respectively, which coordinated directly to the vanadium oxide framework. And they are both non-mixed-valence complexes. But the compound (1) is isolated, and the compound (2) consists of a cation of [(2,2′-bipy)₂V^VO₂]⁺ and an anion of (H₂BO₃)⁻. So the valence of vanadium of (1) and (2) are tetravalence and pentavalence, respectively. Meanwhile it is noteworthy that π-π stacking interaction between adjacent phen and 2,2′-bipy groups in compounds 1 and 2 also play a significant role in stabilization of the structure. Thus, the structure of [V^IVO₂(phen)₂]·6H₂O and [(2,2′-bipy)₂V^VO₂](H₂BO₃)·3H₂O are both further extended into interesting three-dimensional supramolecular. Crystal data: (1) Triclinic, a=8.481(4), b=12.097(5), and α=66.32(2), β=82.97(3), and γ=82.59(4)°, Z=2, R₁=0.0685, wR₂=0.1522. (2) Triclinic, a=6.643(13), b=11.794(2), and α=101.39(3), β=101.59(3), and γ=97.15(3)°, Z=2, R₁=0.0736, wR₂=0.1998.     

(2,2′-bipy)[In2(OH)2(H2O)](SO4)2: The first indium sulfate with a layer structure

The first indium sulfate coordination complex, (2,2′-bipy)[In₂(OH)₂(H₂O)](SO₄)₂ (2,2′-bipy=2,2′-bipyridyl) was hydrothermally synthesized and characterized by single-crystal X-ray diffraction (XRD), the powder XRD, elemental analysis, inductively coupled plasma (ICP) analysis, thermogravimetric analysis (TGA), IR spectroscopy and fluorescent spectroscopy. It is noteworthy that this compound exhibits a novel two-dimensional layer structure, which is built up from two distinct motifs, a butlerite-type chain and a single 4-ring (S4R) unit. The adjacent layers are stably packed together and extended into three-dimensional supramolecular arrays via π-π stacking interactions of the 2,2′-bipy ligands. Additionally, this compound shows strong fluorescent property at room temperature, which may be assigned to ligand-centered π*-π transitions.     

Steric and electronic effects in stabilizing allyl-palladium complexes of “P-N-P” ligands, X2PN(Me)PX2 (X = OC6H5 or OC6H3Me2-2,6)

The chemistry of η³-allyl palladium complexes of the diphosphazane ligands, X₂PN(Me)PX₂ [X = OC₆H₅ (1) or OC₆H₃Me₂-2,6 (2)] has been investigated.The reactions of the phenoxy derivative, (PhO)₂PN(Me)P(OPh)₂ with [Pd(η³-1,3-R′,R″-C₃H₃)(μ-Cl)]₂ (R′ = R″ = H or Me; R′ = H, R″ = Me) give exclusively the palladium dimer, [Pd₂{μ-(PhO)₂PN(Me)P(OPh)₂}₂Cl₂] (3); however, the analogous reaction with [Pd(η³-1,3-R′,R″-C₃H₃)(μ-Cl)]₂ (R′ = R″ = Ph) gives the palladium dimer and the allyl palladium complex [Pd(η³-1,3-R′,R″-C₃H₃)(1)](PF₆) (R′ = R″ = Ph) (4). On the other hand, the 2,6-dimethylphenoxy substituted derivative 2 reacts with (allyl) palladium chloro dimers to give stable allyl palladium complexes, [Pd(η³-1,3-R′,R″-C₃H₃)(2)](PF₆) [R′ = R″ = H (5), Me (7) or Ph (8); R′ = H, R″ = Me (6)].Detailed NMR studies reveal that the complexes 6 and 7 exist as a mixture of isomers in solution; the relatively less favourable isomer, anti-[Pd(η³-1-Me-C₃H₄)(2)](PF₆) (6b) and syn/anti-[Pd(η³-1,3-Me₂-C₃H₃)(2)](PF₆) (7b) are present to the extent of 25% and 40%, respectively. This result can be explained on the basis of the steric congestion around the donor phosphorus atoms in 2. The structures of four complexes (4, 5, 7a and 8) have been determined by X-ray crystallography; only one isomer is observed in the solid state in each case.     

Cyclization versus oligomerization of SP- and RP-5′-OH-N-benzoyl-2′-deoxycytidine-3′-O-(2-thio-4,4-pentamethylene-1,3,2-oxathiaphospholane)s

The S_P-isomer of 5′-OH-N⁴-benzoyl-2′-deoxycytidine-3′-O-(2-thio-4,4-pentamethylene-1,3,2-oxathiaphospholane) undergoes DBU-promoted intramolecular cyclization providing as a sole product S_P-deoxycytidine cyclic 3′,5′-O,O-phosphorothioate. Unexpectedly, the R_P-counterpart yields a mixture of products consisting of R_P-deoxycytidine cyclic 3′,5′-O,O-phosphorothioate and macrocyclic oligo(deoxycytidine phosphorothioate)s. The results of molecular modeling indicate that the dychotomy observed for the R_P substrate may result from remarkably higher energy of the corresponding transition states, caused by the presence of bulky ‘spiro’ pentamethylene substituent at the position C4 in the oxathiaphospholane ring.     

Chiral “P-N-P” ligands, (C20H12O2)PN(R)PY2 [R = CHMe2, Y = C6H5, OC6H5, OC6H4-4-Me, OC6H4-4-OMe or OC6H4-4-Bu] and their allyl palladium complexes

Chiral “P-N-P” ligands, (C₂₀H₁₂O₂)PN(R)PY₂ [R = CHMe₂, Y = C₆H₅ (1), OC₆H₅ (2), OC₆H₄-4-Me (3), OC₆H₄-4-OMe (4) or OC₆H₄-4-^tBu (5)] bearing the axially chiral 1,1′-binaphthyl-2,2′-dioxy moiety have been synthesised. Palladium allyl chemistry of two of these chiral ligands (1 and 2) has been investigated. The structures of isomeric η³-allyl palladium complexes, (R′ = Me or Ph; Y = C₆H₅ or OC₆H₅) have been elucidated by high field two-dimensional NMR spectroscopy. The solid state structure of [Pd(η³-1,3-Ph₂-C₃H₃){κ²-(racemic)-(C₂₀H₁₂O₂)PN(CHMe₂)PPh₂}](PF₆) has been determined by X-ray crystallography. Preliminary investigations show that the diphosphazanes, 1 and 2 function as efficient auxiliary ligands for catalytic allylic alkylation but give rise to only moderate levels of enantiomeric excess.