On the direct scavenging activity of melatonin towards hydroxyl and a series of peroxyl radicals

The reactions of melatonin (MLT) with hydroxyl and several peroxyl radicals have been studied using the Density Functional Theory, specifically the M05-2X functional. Five mechanisms of reaction have been considered: radical adduct formation (RAF), Hydrogen atom transfer (HAT), single electron transfer (SET), sequential electron proton transfer (SEPT) and proton coupled electron transfer (PCET). It has been found that MLT reacts with OH radicals in a diffusion-limited way, regardless of the polarity of the environment, which indicates that MLT is an excellent OH radical scavenger. The calculated values of the overall rate coefficient of MLT + ˙OH reaction in benzene and water solutions are 2.23 × 10(10) and 1.85 × 10(10) M(-1) s(-1), respectively. MLT is also predicted to be a very good ˙OOCCl(3) scavenger but rather ineffective for scavenging less reactive peroxyl radicals, such as alkenyl peroxyl radicals and ˙OOH. Therefore it is concluded that the protective effect of MLT against lipid peroxidation does not take place by directly trapping peroxyl radicals, but rather by scavenging more reactive species, such as ˙OH, which can initiate the degradation process. Branching ratios for the different channels of reaction are reported for the first time. In aqueous solutions SEPT was found to be the main mechanism for the MLT + ˙OH reaction, accounting for about 44.1% of the overall reactivity of MLT towards this radical. The good agreement between the calculated and the available experimental data, on the studied processes, supports the reliability of the results presented in this work.     

A quantum chemical study on the free radical scavenging activity of tyrosol and hydroxytyrosol

The free radical scavenging activity of hydroxytyrosol (HTyr) and tyrosol (Tyr) has been studied in aqueous and lipid solutions, using the density functional theory. Four mechanisms of reaction have been considered: single electron transfer (SET), sequential electron proton transfer (SEPT), hydrogen transfer (HT), and radical adduct formation. It was found that while SET and SEPT do not contribute to the overall reactivity of HTyr and Tyr toward ^·OOH and ^·OCH₃ radicals, they can be important for their reactions with ^·OH, ^·OCCl₃, and ^·OOCCl₃. The ^·OOH-scavenging activity of HTyr and Tyr was found to take place exclusively by HT, and it is also predicted to be the main mechanism for their reactions with ^·OCH₃. HT is proposed as the main mechanism for the scavenging activity of HTyr and Tyr when reacting with other ^·OR and ^·OOR radicals, provided that R is an alkyl or an alkenyl group. The major products of reaction are predicted to be the phenoxyl radicals. In addition, Tyr was found to be less efficient than HTyr as free radical scavenger. Moreover, while HTyr is predicted to be a good peroxyl scavenger, Tyr is predicted to be only moderately for that purpose.     

A theoretical study on the antioxidant activity of Uralenol and Neouralenol scavenging two radicals

Uralenol and neouralenol are two typical licorice root extracts that presents multiple reactive hydroxyl groups, which are considered as good free radical scavengers. A theoretical study on the primary antioxidant activity of uralenol and neouralenol toward hydroxyl and hydroperoxyl radicals has been carried out using the density functional theory (DFT). A total of 10 reaction pathways of uralenol and neouralenol scavenging two radicals in gas phase and in water phase have been tracked. Neouralenol was found to be a better hydroxyl and hydroperoxyl scavenger than uralenol. In vivo, the more reactive sites in uralenol are U5 and U’1, respectively, for scavenging ·OH and ·OOH; and the more reactive sites in neouralenol are N4 and N’5 for scavenging ·OH and ·OOH, respectively.     

Mechanistic insights on how hydroquinone disarms OH and OOH radicals

Phenol derivatives are distinguished as successful free radical scavengers. We present a detailed analysis of hydroxyl hydrogen abstraction from hydroquinone by hydroxyl and hydroperoxyl radical with emphasis on changes that take place in the vicinity of the transition state. Quantum theory of atoms in molecules is employed to elucidate the sequence of positive and negative charge transfer by studying selected properties of the three key atoms (the transferring hydrogen, the donor atom, and the acceptor atom) along intrinsic reaction path. The presented results imply that in both reactions, which are examples of proton coupled electron transfer, proton, and electron get simultaneously transferred to the radical oxygen atom. The fact that the hydrogen's charge and volume do not monotonously change in the vicinity of the transition state in the product valley results from the adjacency of the proton and the electron to the donor and the acceptor oxygen atoms. Obtaining a detailed understanding of mechanisms by which free radicals are disarmed is of paramount importance given the effects of those highly reactive species on biological systems. A comprehensive analysis of hydroxyl hydrogen abstraction from hydroquinone by hydroxyl and hydroperoxyl radicals, based on changes of selected electronic properties of the three most relevant atoms (hydrogen donor, hydrogen acceptor, and the hydrogen itself), along the reaction coordinate, can be obtained by first‐principles calculations.     

A DFT study on reaction of eupatilin with hydroxyl radical in solution

Antioxidants scavenge reactive oxygen species and, therefore, are vitally important in the living cells. The antioxidant properties of eupatilin have recently been reported. In this article, the reactions of eupatilin with the hydroxyl radical (OH^?) in solution are studied using density functional theory calculations and the polarizable continuum model. Three mechanisms are considered including: sequential electron proton transfer (SEPT), sequential proton loss electron transfer (SPLET), and hydrogen abstraction (HA). Three solvents with different polarities, that is, benzene, methanol, and water, are used to investigate the effect of the environment on the mechanisms. The relative Gibbs free energies and enthalpies corresponding to different mechanisms are calculated. Our results show that SEPT is thermodynamically favored in aqueous solution. Once the eupatilin anion is produced, the second step in SPLET mechanism is thermodynamically favored in methanol and water. The HA mechanism is thermodynamically favored in gas, benzene, methanol, and water. This mechanism is more energetically favorable to occur in a more polar solvent. The natural bond orbital charges and spin densities as well as the singly occupied molecular orbital are then analyzed. It is concluded that the HA process is governed by proton coupled electron transfer mechanism. The attack of the radical takes place preferentially at position 7 of eupatilin. © 2012 Wiley Periodicals, Inc.     

Molecular description of indigo oxidation mechanisms initiated by OH and OOH radicals

In this work, we report a quantum chemistry mechanistic study of the hydroxyl (?OH) and hydroperoxyl (?OOH) radicals initiated oxidation of indigo, within the density functional theory framework. All possible hydrogen abstraction and radical addition reaction pathways have been considered. We find that the reaction between a free indigo molecule and an ?OH radical occurs mainly through two competing mechanisms: H-abstraction from an NH site and ?OH addition to the central C═C double bond. Although the latter is favored, both channels occur, the indigo chromophore group structure is modified, and thus the color is changed. This mechanism adequately accounts for the loss of chromophore in urban air, including indoor air such as in museums and in urban areas. Regarding the reactivity of indigo toward ?OOH radicals, only ?OOH-addition to the central double bond is thermodynamically feasible. The corresponding transition state free energy value is about 10 kcal/mol larger than the one for the ?OH initiated oxidation. Therefore, even considering that the ?OOH concentration is considerably larger than the one of ?OH, this reaction is not expected to contribute significantly to indigo oxidation under atmospheric conditions.     

DFT study of free radical scavenging activity of erodiol

Antioxidant activity of erodiol was examined at the M05-2X/6-311+G(d,p) level of theory in the gas and aqueous phases. The structure and energy of radicals and anions of the most stable erodiol rotamer were analyzed. To estimate antioxidant potential of erodiol, different molecular properties were examined: bond dissociation enthalpy, proton affinity together with electron transfer energy, and ionization potential followed by proton dissociation enthalpy. It was found that hydrogen atom transfer is the prevailing mechanism of erodiol behavior in gas; whereas single electron transfer followed by proton transfer and sequential proton loss electron transfer mechanisms represent the thermodynamically preferred reaction paths in water.     

An ESR study of radiation damage of bisphenol-A-based epoxy resin at low temperature: Selective hydrogen addition to benzene-ring-forming cyclohexadienyl-type radical

In the γ-irradiated aromatic epoxy resin, diglycidylether of bisphenol A cured with diaminodiphenylmethane, the cyclohexadienyl-type radical is produced as one of the main radical species. Although both the resin and the hardener contain benzene rings, it is concluded that the cyclohexadienyl-type radical is formed by selective addition of the OH hydrogen to the benzene ring on the resin side. The selectivity is accounted for in terms of electron capture by the benzene ring followed by proton transfer from the OH group which is located in front of the benzene ring. This reaction scheme is further supported by the effect of the addition of an electron scavenger on the radical yield as well as by the photobleaching behavior of the radicals involved.     

Theoretical study of the trapping of the OOH radical by coenzyme Q

The reactivity of the hydroperoxyl radical with coenzyme Q, as a prototypical chemical reaction involved in biological antioxidant actions, was studied theoretically. Two pathways were analyzed: the hydrogen abstraction reaction from the phenolic hydrogen on the reduced form (ubiquinol), and OOH addition on the oxidized form (ubiquinone). Optimized geometries, harmonic vibrational frequencies, and energies of the stationary points (reactants, intermediate complexes, transition states, and products) for each pathway were calculated at the BHandHLYP/6-31G level of theory. The reaction paths for the two mechanisms were traced independently, and the respective thermal rate constants were calculated using variational transition-state theory with multidimensional small-curvature tunneling. We found that the reactivity of the OOH radical is dominated by the hydrogen abstraction mechanism on ubiquinol, with a rate constant of 5.32 x 10(5) M(-1) s(-1), at 298 K. This result strongly contrasts with that, also obtained by our group, for the more reactive OH radical, which attacks ubiquinone by an addition mechanism, with a diffusion-controlled rate of 6.25 x 10(10) M(-1) s(-1), at 298 K.     

A density functional theory study of the free-radical scavenging activity of aminoguanidine. Comparison with its reactive carbonyl compound and metal scavenging activities

Since protein glycation is related to several human diseases, it is very important to develop molecules that can inhibit its effects. This work adds the reaction of Aminoguanidine (AG) with the methoxy (˙OCH₃) and hydroperoxyl (˙OOH) radicals at the UM05-2X-SMD/6-311+G(d,p) level of theory in water and pentyl ethanoate to simulate the physiological aqueous and lipidic environments. At physiological pH, AG is an effective ˙OCH₃ and a moderate ˙OOH scavenger in nonpolar solvents (where AG is predominantly neutral), acting exclusively by hydrogen-atom transfer. However, reactions in a polar solvent (where AG is predominantly cationic) have smaller rate constants. Therefore, the ability of AG to scavenge free radicals seems to depend on the polarity of the environment. Taken together, the results reported herein and in previous works suggest that the scavenging of reactive carbonyl species is the main mechanism of action of aminoguanidine in the context of protein glycation inhibition.     

Reactivities of hydroxyl and perhydroxyl radicals toward cytosine and thymine: A comparative study

As the hydroxyl (OH) and perhydroxyl (OOH) radicals are known to play important roles in biological systems, their reactions with cytosine and thymine were studied. Addition reactions of these radicals at different sites of cytosine and thymine, and hydrogen abstraction reactions by each of the two radicals from the different sites of the two molecules were studied at the B3LYP/6‐31G(d,p), B3LYP/AUG‐cc‐pVDZ and BHandHLYP/AUG‐cc‐pVDZ levels of density functional theory. Effect of solvation in aqueous media on the reactions was studied at all these levels of theory using single point energy calculations using the polarizable continuum model. The present study shows that whereas the OH radical would abstract H atoms from the various sites of cytosine and thymine efficiently, the OOH radical would have poor reactivity in this regard. The OH radical is also predicted to be much more reactive than the OOH radical with regard to addition reactions at the C5 and C6 sites of both thymine and cytosine, though the OOH radical is also predicted to have significant reactivity in this respect. © 2012 Wiley Periodicals, Inc.     

Antioxidant properties of phenolic Schiff bases: structure–activity relationship and mechanism of action

Phenolic Schiff bases are known for their diverse biological activities and ability to scavenge free radicals. To elucidate (1) the structure–antioxidant activity relationship of a series of thirty synthetic derivatives of 2-methoxybezohydrazide phenolic Schiff bases and (2) to determine the major mechanism involved in free radical scavenging, we used density functional theory calculations (B3P86/6-31+(d,p)) within polarizable continuum model. The results showed the importance of the bond dissociation enthalpies (BDEs) related to the first and second (BDE_d) hydrogen atom transfer (intrinsic parameters) for rationalizing the antioxidant activity. In addition to the number of OH groups, the presence of a bromine substituent plays an interesting role in modulating the antioxidant activity. Theoretical thermodynamic and kinetic studies demonstrated that the free radical scavenging by these Schiff bases mainly proceeds through proton-coupled electron transfer rather than sequential proton loss electron transfer, the latter mechanism being only feasible at relatively high pH.     

Mechanism and kinetics studies on the antioxidant activity of sinapinic acid

The OOH radical scavenging activity of sinapinic acid (HSA) has been studied in aqueous and lipid solutions, using the Density Functional Theory. HSA is predicted to react about 32.6 times faster in aqueous solution than in lipid media. The overall rate coefficients are predicted to be 5.39 × 10(5) and 1.66 × 10(4) M(-1) s(-1), respectively. Branching ratios for the different channels of reaction are also reported for the first time, as well as the UV-Vis spectra of the main products of reaction. It was found that the reactivity of sinapinic acid towards OOH radicals takes place almost exclusively by H atom transfer from its phenolic moiety. However it was found to react via SET, at diffusion-limit controlled rate constants, with ˙OH, ˙OCCl(3) and ˙OOCCl(3) radicals. It was found that the polarity of the environment and the deprotonation of HSA in aqueous solution, both increase the reactivity of this compound towards peroxyl radicals.     

Mechanism and kinetics of the hydroxyl and hydroperoxyl radical scavenging activity of <Emphasis Type="Italic">N</Emphasis>-acetylcysteine amide

The ^·OH and ^·OOH radical scavenging activity of N-acetylcysteine amide (NACA) has been studied using density functional theory, specifically the M05-2X functional. All possible reaction sites have been considered, and the branching ratios have been estimated. The efficiency of different mechanisms of reaction has been evaluated, and it has been concluded that NACA reacts exclusively by hydrogen atom transfer (HAT). The overall reactivity of NACA toward OH radicals is proposed to be diffusion-controlled in both non-polar and polar media. The values of the overall rate coefficients are 3.80 × 10⁹ and 1.36 × 10⁹ L mol⁻¹ s⁻¹ for benzene and aqueous solutions, respectively. The reactivity of NACA toward ^·OOH, on the other hand, is much lower but still higher than those of melatonin and caffeine. HAT from the –SH site is proposed to be the channel accounting for most of the radical scavenging activity of NACA in aqueous solution. In non-polar environments, two channels of reaction were found to similarly contribute to the overall reactivity of NACA toward OH radicals. They are those corresponding to hydrogen atom transfer from –CH₂ and –SH sites.     

Antioxidant and spectral properties of chalcones and analogous aurones: Theoretical insights

Density functional theory (DFT) and time-dependent DFT (TD-DFT) have been employed to elucidate the radical scavenging capacity and the UV–Vis spectral property of several chalcones and analogous aurones. Three main antioxidant mechanisms, hydrogen atom transfer (HAT), electron transfer followed by proton transfer (SET-PT) and sequential proton loss electron transfer (SPLET) were investigated. The results indicate that all the studied compounds adopt a fully planar conformation in their neutral, radical, cationic as well as anionic forms. 2′-OH plays important role in the stabilization of phenolic radicals due to the formation of intramolecular hydrogen bonds (IHBs). Introduction of electron-donating substituent on B-ring is helpful for improving the activity. For the considered compounds, HAT is proposed as the thermodynamically favored mechanism in gas phase and nonpolar environment, while SPLET is preferred in polar media. The results confirmed the crucial role of hydroxyl group on A-ring, especially on position 5′/5, in terms of the radical scavenging ability. The absorption spectra of title compounds were successfully simulated and the lowest energy transitions predominantly correspond to the π-π* transitions from HOMO to LUMO with charge transfer (CT) character.     

Role of water and carbonates in photocatalytic transformation of CO2 to CH4 on titania

Using the electron paramagnetic resonance technique, we have elucidated the multiple roles of water and carbonates in the overall photocatalytic reduction of carbon dioxide to methane over titania nanoparticles. The formation of H atoms (reduction product) and (?)OH radicals (oxidation product) from water, and CO(3)(-) radical anions (oxidation product) from carbonates, was detected in CO(2)-saturated titania aqueous dispersion under UV illumination. Additionally, methoxyl, (?)OCH(3), and methyl, (?)CH(3), radicals were identified as reaction intermediates. The two-electron, one-proton reaction proposed as an initial step in the reduction of CO(2) on the surface of TiO(2) is supported by the results of first-principles calculations.     

Herba Ecliptae Protects against Hydroxyl Radical‐induced Damages to DNA and Mesenchymal Stem Cells via Antioxidant Mechanism

Herba Ecliptae (HE) is a typical Chinese herbal medicine used in China for 1500 years. In the study, HE was extracted by various solvents to prepare five HE extracts. They were observed to possess a protective effect against ×OH‐induced DNA damage, and scavenging effects on ×OH radical, ×O₂^? radical, DPPH×(1,1‐diphenyl‐2‐picrylhydrazyl) radical, and ABTS×⁺ (2,2′‐azino‐bis(3‐ethyl‐benzothiazoline‐6‐sulfonic acid) radical, and reduce Cu²⁺ ion. The contents of total phenolics and wedelolactone in five extracts were determined respectively using Folin‐Ciocalteu method and HPLC method. To identify which chemical component can be responsible for its effects, the correlation graphs between chemical contents and antioxidant abilities (1/IC₅₀ values) were plotted to calculate correlation coefficients (R values). Finally, MTT assay revealed that two HE extracts could effectively protect mesenchymal stem cells (MSCs) against ×OH‐induced damage at 3‐30 μg/mL. On the basis of mechanistic analysis, we concluded that: (i) HE can effectively protect against ×OH‐induced damages to DNA and MSCs, thereby HE may have a therapeutic potential in MSCs transplantation or prevention of many diseases; (ii) the effects can be mainly attributed to total phenolics (R = 0.678) especially wedelolactone (R = 0.618); (iii) they exert antioxidant action via hydrogen atom transfer (HAT) and sequential electron proton transfer (SEPT) mechanisms.     

Enhancing effect of alcoholic solvent on hydrosulfite-hydrogen peroxide chemiluminescence system

In this work, a chemiluminescence (CL) reaction between hydrogen peroxide (H(2)O(2)) and sodium hydrosulfite (NaHSO(3)) was developed. Hydroxyl radical ((?)OH) and sulfite radical ((?)SO(3)(-)) were the main intermediates generated in the NaHSO(3)-H(2)O(2) CL system. Inhibition effects of radical scavengers such as thiourea, chloride ion, nitro blue tetrazolium chloride (NBT), and 5,5-dimethyl-1-pyrroline N-oxide (DMPO) indicated the existence of these two radicals. Singlet oxygen ((1)O(2)) and excited sulfur dioxide (SO(2)*) were emitting species involved in NaHSO(3)-H(2)O(2) CL system. (1)O(2) were confirmed by 1,4-diazobicyclo[2,2,2]octane (DABCO) and sodium azide (NaN(3)), which were specific (1)O(2) scavengers. In addition, electron spin resonance (ESR) spectra clearly show the existence of (1)O(2) and (?)OH. Alcoholic solvent, especially n-butanol, enhanced the ultraweak CL emission more than 40 times. The enhancing effect of alcoholic solvent on NaHSO(3)-H(2)O(2) CL system was ascribed to the formation of solvent cage, which can accelerate the reaction rate and protect the emitting species from quenching by water. The CL emission of the NaHSO(3)-n-butanol-H(2)O(2) system was measured by cutoff filters. The maximum wavelength was located around 490 nm, which belongs to (1)O(2). The wide peak from 400 to 600 nm is the characteristic peak of SO(2)*.     

Direct ESR detection and spin trapping of radicals generated by reaction of oxygen radicals with sulfonated poly(ether ether ketone) (SPEEK) membranes

The stability of membranes under the strong oxidizing conditions in fuel cells is one of the major challenges in the development of fuel cells based on proton exchange membranes (PEMs). This study is centered on the determination of the susceptibility to degradation of SPEEK membranes exposed to OH radicals, using both direct ESR and spin trapping with 5,5-dimethyl-1-pyrroline-1-oxide (DMPO). In order to achieve a complete picture on SPEEK degradation, two types of experiments were performed: 1. UV irradiation at 77 K of SPEEK membranes swollen by aqueous solutions of H₂O₂; 2. UV irradiation of SPEEK membranes swollen by aqueous solutions of H₂O₂ in the presence of DMPO as a spin trap. UV irradiation without oxygen of SPEEK at 77 K in acid or basic form in the presence of H₂O₂/H₂O produced phenoxyl radicals as the predominant radicals detected by direct ESR or spin trapping methods. At pH 4, the oxygen radicals produced phenyl radicals as the predominant species detected by spin trapping methods. The hydroperoxyl radical, as DMPO/OOH adduct, was detected only when the DMPO/OH adduct was absent. The appearance of phenyl and phenoxyl radicals provides the evidence that OH radicals react with the aromatic ring of SPEEK or leading to the scission of its ether bridge.     

Scavenging mechanism of curcumin toward the hydroxyl radical: a theoretical study of reactions producing ferulic acid and vanillin

Curcumin is known to be an antioxidant, as it can scavenge free radicals from biological media. A sequence of H-abstraction and addition reactions involving up to eight OH radicals and curcumin or its degradation products leading to the formation of two other antioxidants, namely, ferulic acid and vanillin, was studied. Single electron transfer from curcumin to an OH radical was also studied. All relevant extrema on the potential energy surfaces were located by optimizing geometries of the reactant and product complexes, as well as those of the transition states, at the BHandHLYP/6-31G(d,p) level of density functional theory in the gas phase. Single-point energy calculations were also performed in the gas phase at the BHandHLYP/aug-cc-pVDZ and B3LYP/aug-cc-pVDZ levels of theory. Solvent effects in aqueous media were treated by performing single-point energy calculations at all of the above-mentioned levels of theory employing the polarizable continuum model and the geometries optimized at the BHandHLYP/6-31G(d,p) level in the gas phase. A few reaction steps were also studied by geometry optimization in aqueous media, and the thus-obtained Gibbs free energy barriers were similar to those obtained by corresponding single-point energy calculations. Our calculations show that the hydrogen atom of the OH group attached to the phenol moiety of curcumin would be most efficiently abstracted by an OH radical, in agreement with experimental observations. Further, our study shows that OH addition would be most favored at the C10 site of the heptadiene chain. It was found that curcumin can serve as an effective antioxidant.