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1.
A water soluble compound, (2-((1H-benzimidazol-2-yl)methylamino)acetic acid, BIGH, has been synthesized and structurally characterized by elemental analysis, IR and UV spectroscopies, 1H-NMR, thermogravimetric and differential thermal analyses, and single crystal and powder X-ray diffraction. BIGH can act as a flexible planar ligand with three potential coordination sites. It crystallizes in a monoclinic system with the sp. gr. P21/c with the unit cell parameters, a = 9.3764(7) Å, b = 11.5031(8) Å, c = 10.0543(6) Å, and Z = 4. The crystal structure was stabilized through inter-molecular hydrogen bonds. The anti-microbial activity of the compound has been studied against Escherichia coli, Bacillus subtilis, Pseudomonas aeruginosa, and Staphylococcus aureus, which showed a good activity against Bacillus subtilis. Cyclic voltammogram of the compound shows that it is a redox-active molecule.  相似文献   

2.
Sodium borohydride reduction of E-3-benzylidenechromanone epoxides in dry methanol has afforded 3(S*), 4(S*)-dihydroxy-3-[α(R*)-methoxybenzyl]chromans as an interesting class of products, the structures of which have been assigned mainly from spectral data and consideration of the mechanistic aspects. X-ray diffraction study of one of them, 3-[4-bromo-α(R*)-methoxybenzyl]-6-chloro-3(S*),4(S*)- dihydroxychroman, is performed. The title compound crystallizes in the monoclinic sp. gr. P21/n, with a = 13.336(6) Å, b = 10.866(5) Å, c = 27.166(11) Å, β = 95.193(6)°, V = 3920(3) Å3, and Z = 8. Supramolecular construction of the compound involves O–H···O intermolecular hydrogen bonds as well as three other types of non-covalent interactions which are responsible for crystal packing. Density functional theory was applied for geometry optimization, molecular orbital calculations, and prediction of UV spectral features. The geometric parameters (bond lengths, bond angles, and dihedral angles) for the representative compound obtained from density functional theory with B3LY6-31G basis set were in good agreement with experimental values.  相似文献   

3.
Recombinant purine nucleoside phosphorylase from the thermophilic Thermus thermophilus strain encoded by the TT_C0194 gene was purified to homogeneity. The crystallization conditions for the enzyme were found by the vapor-diffusion technique. The crystals of the enzyme suitable for X-ray diffraction were grown under microgravity conditions by the capillary counter-diffusion method. The crystals belong to sp. gr. P212121 and have the following unit-cell parameters: a = 89.9 Å, b = 121.0 Å, c = 215.7 Å, α = β = γ = 90°. The X-ray diffraction data set suitable for the determination of the three-dimensional structure of purine nucleoside phosphorylase was collected from the grown crystals at the SPring-8 synchrotron facility to 2.5 Å resolution.  相似文献   

4.
The title compound, ethyl 2-(4-methoxyphenyl)-1H-benzo[d]imidazole-5-carboxylate dihydrate (5), was synthesized and its crystal structure was studied by single-crystal X-ray diffraction technique. Compound 5 is crystallized in the centrosymmetric triclinic space group \(P\bar {1}\) with Z?=?4 and Z′?=?2, and unit-cell parameters of a?=?8.9190 (3) Å, b?=?12.6888 (4) Å, c?=?14.7111 (5) Å, α?=?98.4855 (10)°, β?=?101.6379 (9)°, γ?=?95.4346 (10)° and V?=?1599.43 (9) Å3. Its starting material, 4-fluoro-3-nitrobenzoic acid (1), is crystallized in the non-centrosymmetric monoclinic space group P21 and Z?=?4 with unit-cell parameters of a?=?3.7170 (4) Å, b?=?12.6475 (13) Å, c?=?15.5237 (15) Å, α?=?90°, β?=?91.9786 (16)°, γ?=?90° and V?=?729.35 (13) Å3. It was noted that strong hydrogen bonds play important roles in the crystal packing of both compounds, especially in 5, in which the co-crystallized water molecules act as both strong hydrogen bond donor and strong hydrogen bond acceptor.

Graphical Abstract

Two molecule of compound 5 crystallized in a non symmetrical manner with four co-crystallized water molecules which play an important role in the crystal packing as strong hydrogen-bond donors.
  相似文献   

5.
An accurate structure analysis of a Ba3TaGa3Si2O14 single crystal from langasite family was performed using four X-ray diffraction data sets collected on a diffractometer equipped with a CCD area detector (sp. gr. P321, Z = 1, sinθ/λ ≤ 1.35 Å–1; at 295 K a = 8.516(1) Å, c = 5.1910(6) Å, R/wR = 0.58/0.56%, Δρmin/Δρmax =–0.73/0.42 e/Å3, 4414 independent reflections; at 106 K a = 8.5109(9) Å, c = 5.1861(9) Å, R/wR = 0.75/0.86%, Δρmin/Δρmax =–0.81/1.06 e/Å3, 4382 reflections). The distinguishing feature of the Ba3TaGa3Si2O14 structure is a strong disorder of the Ga atom at the 3f site. Structural transformations in the series of Сa3TaGa3Si2O14–Sr3TaGa3Si2O14–Ba3TaGa3Si2O14–Ba3TaFe3Si2O14 crystals were analyzed.  相似文献   

6.
The 2,5-dimethylol-3,6-dimethylpyrazine, C8H12N2O2, liguzinediol, has been recently discovered as a potential agent for the treatment of heart failure with low safety risk. The crystal structure of liguzinediol, which has been determined by single-crystal X-ray diffraction analysis, is reported for the first time. The liguzinediol crystal may be obtained from 50% ethanol or ethyl acetate. The compound crystallizes in the monoclinic system with the sp. gr. P21/n and the unit cell parameters a = 4.0560(8) Å, b = 12.280(3) Å, c = 8.5370(17) Å, β = 96.93(3)°, Z = 2. The molecule forms S2-symmetric conformation in the crystal. The hydroxyl H atom forms short intermolecular contacts with the neighbouring pyrazine N atom, which forms the weak hydrogen bonds in the crystal.  相似文献   

7.
The mineral cymrite from the Ruby Creek deposit (Alaska) was reinvestigated by X-ray diffraction in a pseudo-orthorhombic unit cell with a = 5.3350(1) Å, b = 36.9258(8) Å, c = 7.6934(1) Å, β = 90.00(1)°. A twin law corresponding to a sixfold axis was revealed for the first time. The structure was refined in the monoclinic space group P1211 to the R factor of 5.4%. The Al and Si atoms are assumed to be ordered within a double layer. The rotation of the cation sublattice by 60° around the c axis leads to the disorder of the T sites in the crystal structure (T = Al, Si).  相似文献   

8.
Hydrogen-bearing vuonnemite from the Shkatulka hyperagpaitic pegmatite (the Lovozero alkaline massif, Kola Peninsula) was studied by single-crystal X-ray diffraction. The triclinic unit-cell parameters are as follows: a = 5.4712(1) Å, b = 7.1626(1) Å, c = 14.3702(3) Å, α = 92.623(2)°, β = 95.135(1)°, γ = 90.440(1)°, sp. gr. P1, R = 3.4%. The Na+ cations and H2O molecules are ordered in sites between the packets. The water molecules are hydrogen bonded to the PO4 tetrahedra.  相似文献   

9.
The structure of the mineral jinshajiangite from the Norra Kärr alkaline complex (Sweden) was determined by single-crystal X-ray diffraction and refined to R = 6.7%. The monoclinic unit-cell parameters are a = 5.350(2) Å, b = 6.909(6) Å, c = 20.96(1) Å, β = 99.83(4)°, sp. gr. P2/m. This mineral is an Fe-rich analogue of surkhobite and perraultite, but it crystallizes in a different space group, and the unit-cell parameters a and b are two times smaller than those of these two minerals. The framework of jinshajiangite from Norra Kärr contains narrow and wide channels, which are occupied by Ca, Na, Ba, and K atoms in an ordered fashion.  相似文献   

10.
Crystals of new iodate NaIn[IO3]4 were prepared by the hydrothermal synthesis. The unit cell parameters are a = 7.2672(2) Å, b = 15.2572(6) Å, c = 15.0208(6) Å, β = 101.517(3)°, sp. gr. P21/c. The formula was determined during the structure determination and refinement of a twinned crystal based on a set of reflections from the atomic planes of the major individual. The refinement with anisotropic displacement parameters was performed for both twin components to the final R factor of 0.050. The In and Na atoms are in octahedral coordination formed by oxygen atoms. The oxygen octahedra are arranged into columns by sharing edges, and the columns are connected by isolated umbrella-like [IO3] groups to form layers. The new structure is most similar to the isoformular iodate NaIn[IO3]4, which crystallizes in the same sp. gr. P21/c and is structurally similar, but has a twice smaller unit cell and is characterized by another direction of the monoclinic axis. The structural similarity and difference between the two phases were studied by topologysymmetry analysis. The formation of these phases is related to different combinations of identical one-dimensional infinite chains of octahedra.  相似文献   

11.
The structures of five compounds are studied using single-crystal X-ray diffraction: 2-oxo-2,5,6,7-tetrahydro-1H-cyclopenta[b]pyridine-3-carbonitrile [a = 15.641(8) Å, b = 9.373(5) Å, c = 7.387(4) Å, β = 92.91(5)°, Z = 4, space group P21/c]; 1-[2-(4-chlorophenyl)-2-oxoethyl]-2-oxo-2,5,6,7-tetrahydro-1H-cyclopenta[b]pyridine-3-carbonitrile [a = 4.728(4) Å, b = 28.035(11) Å, c = 11.184(3) Å, Z = 4, space group P212121]; 2-[2-(4-chlorophenyl)-2-oxoethoxy]-6,7-dihydro-5H-cyclopenta[b]pyridine-3-carbonitrile [a = 10.1202(13) Å, b = 11.2484(18) Å, c = 13.4323(19) Å, β = 102.05(1)°, Z = 4, space group P21/c]; 2-(4-chlorophenyl)-3a, 6,7,8-tetrahydrocyclopenta[e][1.3]oxazolo[3.2-a]pyridine-4-carboxamide perchlorate [a = 7.702(2) Å, b = 9.599(3) Å, c = 23.798(5) Å, β = 93.44(2)°, Z = 4, space group P21/c]; and (3-amino-6,7-dihydro-5H-cyclopenta[b]furo[3.2-e]pyridin-2-yl)(4-chlorophenyl)methanone [a = 7.3273(2) Å, b = 13.390(3) Å, c = 28.792(8) Å, Z = 8, space group Pbca]. The structures are solved using direct methods and refined by the full-matrix least-squares procedure in the anisotropic approximation to R = 0.0580, 0.0724, 0.0469, 0.0477, and 0.0418, respectively.  相似文献   

12.
The structures of 2,4,6-trinitropyridine (TNPy) and its N-oxide were determined by X-ray single crystal diffraction. TNPy and 2,4,6-trinitropyridine-1-oxide (TNPyO) crystallize in space groupPbcn andPnma, respectively. The crystallographic parameters are as follows: TNPy,a = 28.573(6) Å,b = 9.7394(19) Å, andc = 8.7566(18) Å, α = β = γ = 90°, μ = 0.164 mm?1,V = 2436.8(8) Å3,z = 12,Dx = 1.751 mg/mm3,F(000) = 1296,T = 293(2) K, 1.43°≤ θ≤ 27.40°, the finalR factor:R 1 = 0.0574,wR 2 = 0.1337. TNPyO,a = 9.6272(19) Å,b = 14.128(3) Å, andc = 5.9943(12) Å, α = β = γ = 90°, μ = 0.179 mm?1,V = 815.3(3)Å3,z = 4,Dx = 1.875 mg/mm3,F(000) = 464,T = 293(2) K, 2.88°≤ θ≤ 27.44°, the finalR factor:R 1 = 0.0497,wR 2 = 0.1515.  相似文献   

13.
A series of chalcone podands with the propenone group in the ortho position of the bridging aryl substituent with respect to the oxyethylene fragment is synthesized. The influence of the preorganization of the chalcone podand molecules in crystals on their ability to participate in topochemical reactions is investigated. From analyzing the X-ray structural data, the highest probability of the solid-state photochemical [2 + 2]cycloaddition is predicted for podands with phenyl substituents and the oxyethylene fragment containing two or three oxygen atoms. The X-ray structural data for the chalcone podand C32H26O4 (3a) are as follows: a = 7.904(9) Å, b = 14.92(2) Å, c = 21.30(3) Å, β = 91.7(1)°, monoclinic system, space group P21/c, Z = 4, V = 2510(5) Å3, ρ = 1.26 g/cm3, and R = 0.046; C34H30O5 (3b): a = 15.738(9) Å, b = 11.889(2) Å, c = 15.0830(15) Å, β = 105.47(14)°, monoclinic system, space group C2/c, Z = 4, V = 2720.0(9) Å3, ρ = 1.266 g/cm3, and R = 0.0418; C32H24N2O8 (4a): a = 17.9416(18) Å, b = 10.9703(8) Å, c = 41.699(2) Å, β = 105.970(11)°, monoclinic system, space group P21/c, Z = 4, V = 2781.4(5) Å3, ρ = 1.348 g/cm3, and R = 0.0426; C36H32N2O10 (4c): a = 7.6286(5)Å, b = 17.9398(10) Å, c = 11.5890(3)Å, β = 95.287(4)°, monoclinic system, space group P21/n, Z = 2, V = 1579.27(14) Å3, ρ = 1.372 g/cm3, and R = 0.0377; and C28H22O6 (5a): a = 15.6032(10) Å, b = 8.1131(5) Å, c = 17.7334(11) Å, β = 91.381(5)°, monoclinic system, space group C2/c, Z = 4, V = 2244.2(2) Å3, ρ = 1.345 g/cm3, and R = 0.0309.  相似文献   

14.
A series of new coordination compounds has been synthesized using the organic ligand 1,2-dimethoxy-4,5-bis(2-pyridylethynyl)benzene (dmpeb). The compounds all form dimers consisting of two metal cations bridged by two ligand molecules. Charge balance is provided by halide ligands, and the four-coordinate metal centers are distorted from the ideal tetrahedral environment. [CoCl2(dmpeb)]2 (1) crystallizes in the monoclinic space group P21/n with a = 8.5272(6) Å, b = 18.3653(13) Å, c = 13.3493(9) Å, β = 103.574(2)°, V = 2032.2(2) Å3, Z = 2. [ZnCl2(dmpeb)]2 (2) is isostructural to 1 and has the cell parameters a = 8.5495(4) Å, b = 18.4049(8) Å, c = 13.3692(6) Å, β = 103.4460(10)°, V = 2046.01(16) Å3, Z = 2. [ZnBr2(dmpeb)]2 (3) is also isostructural to 1 with a = 8.7882(5) Å, b = 18.7260(12) Å, c = 13.3857(8) Å, β = 102.5990(10)°, V = 2149.8(2) Å3, Z = 2. Additionally, the compounds [ZnI2(dmpeb)]2 (4, cell parameters: a = 8.9650(5) Å, b = 19.1251(10) Å, c = 13.4160(7) Å, β = 101.1660(10)°, V = 2256.7(2) Å3, Z = 2), [HgCl2(dmpeb)]2 (5, cell parameters: a = 8.8457(7) Å, b = 18.4030(15) Å, c = 13.3711(11) Å, β = 104.246(2)°, V = 2109.7(3) Å3, Z = 2), and [HgBr2(dmpeb)]2 (6, cell parameters: a = 9.0576(5) Å, b = 18.8634(11) Å, c = 13.4535(8) Å, β = 102.9780(10)°, V = 2239.9(2) Å3, Z = 2) are also isostructural to 1. A seventh dimeric compound, [HgI2(dmpeb)]2, not isostructural to the others was also characterized by X-ray crystallography. [HgI2(dmpeb)]2 (7) crystallizes in the triclinic space group P-1 with a = 8.8028(5) Å, b = 12.0990(7) Å, c = 12.4082(7) Å, α = 109.7240(10)°, β = 107.3680(10)°, γ = 93.0880(10)°, V = 1169.57(12) Å3, Z = 1.  相似文献   

15.
The crystal structure of a 12-layer tounkite-like mineral of the cancrinite group was determined for the first time by single-crystal X-ray diffraction analysis (the unit-cell parameters are a = 12.757 Å, c = 32.211 Å). The structure was refined in the space group P3 to R = 0.035 using 3834 reflections with | F| > 2σ(F). Si and Al atoms occupy tetrahedral framework positions in an ordered fashion. The average distances in the tetrahedra are 〈Si-O〉 = 1.611 Å and 〈Al-O〉 = 1.723 Å. The stacking sequence of the layers is described as CACACBCBCACB, where A, B, and C are six-membered rings arranged around the [2/3 1/3 z], [1/3 2/3 z], and [0 0 z] axes, respectively. In the structure of the mineral, the columns along the [0 0 z] axis are composed of cancrinite cages. The columns along the [2/3 1/3 z] and [1/3 2/3 z] axes contain alternating cancrinite, bystrite, and liottite cages.  相似文献   

16.
A novel structure type has been established as a result of studying a non-merohedral microtwin of polyoxovanadate (K2ZnV5O14) by X-ray diffractometry (R = 0.0595). The new compound, synthesized under hydrothermal conditions in the ZnCl2–K2CO3–V2O5–H2O system, is characterized as follows: a = 8.066(5) Å, b = 8.117(5) Å, c = 9.236(5) Å, β = 105.287(5)°, sp. P21/m, Z = 2, ρcalcd = 3.54 g/cm3. Edge-shared five-core “clusters” consisting of vanadium octahedra, between which ZnO4 tetrahedra (sharing vertices with octahedra) are located, form two-dimensional two-layer anion packets of the (ZnV5O14)2– composition, alternating along the c axis with layers of potassium atoms. Structural peculiarities determine the morphology and color of new-phase crystals.  相似文献   

17.
The structure of (K0.967(NH4)0.033)3H(SO4)2 crystals, belonging to the K3H(SO4)2–(NH4)3H(SO4)2–H2O salt system, has been investigated by X-ray structural analysis. The room-temperature characteristics of the atomic structure of these crystals are found to be as follows: sp. gr. C2/c, Z = 4, a = 14.7025(4) Å, b = 5.6859(2) Å, c = 9.7885(3) Å, and R/wR = 0.021/0.030%. The thermal and optical properties of (K,NH4)3H(SO4)2 and K3H(SO4)2 single crystals have been investigated and compared in a temperature range of 295–500 K.  相似文献   

18.
9-(4-Nitrophenyl)-3,3,6,6-tetramethyl-3,4,6,7,9,10-hexahydro-1,8(2H,5H) acridinedione (NTHA) crystallizes in orthorhombic space group P212121 with a = 5.9716(1) Å, b = 18.0476(3) Å, c = 19.2445(2) Å, V = 2074.04(5) Å3, Z = 4, Dcal = 1.263 Mg m?3 and R = 0.0521 (wR = 0.1326) for 4078 observed reflections. 9-(4-Nitrophenyl)-10-(4-methoxyphenyl)-3,3,6,6-tetramethyl-3,4,6,7,9,10-hexahydro-1,8(2H,5H) acridinedione NMTHA, crystallizes in monoclinic space group P21/c with a = 15.669(5) Å, b = 10.652(4) Å, c = 18.337(6) Å, β = 108.25(1)°, V = 2906.66(2) Å3, Z = 4, Dcal = 1.245 Mg m?3 and R = 0.0725 (wR = 0.1847) for 5105 observed reflections. The experimental values are compared with the theoretical values calculated based on the semiemperical methods. The structures are stabilized by N–H?sO and C–H?sO types of intermolecular interactions in addition to van der Waals forces.  相似文献   

19.
The structures of 4,6-dimethyl-1H-pyridin-2-one [a = 6.125(2) Å, b = 15.153(4) Å, and c = 14.477(4) Å, Z = 8, space group Pbca], the 2: 1: 1 complex of 4-methyl-1,5,6,7-tetrahydro-2H-cyclopenta[b]pyridin-2-one with phosphoric acid and methanol [a = 11.181(2) Å, b = 14.059(6) Å, c = 13.593(4) Å, β = 97.78(2)°, Z = 8, space group P21/n], 4-methyl-1,5,6,7,8,9-hexahydro-2H-cyclohepta[b]pyridin-2-one [a = 12.565(6) Å, b = 5.836(6) Å, c = 13.007(3) Å, β = 93.10(3)°, Z = 4, space group P21/n], and 4-methyl-5,6,7,8,9,10-hexahydrocycloocta[b]pyridin-2(1H)-one [a = 12.955(3) Å, b = 6.1595(15) Å, c = 13.038(3) Å, β = 95.50(2)°, Z = 4, space group P21/n] are determined by single-crystal X-ray diffraction. The structures are solved by direct methods and refined by the full-matrix least-squares procedure in the anisotropic approximation to R = 0.0755, 0.0644, 0.0754, and 0.0569, respectively. The structures of 4-methyl-1,5,6,7-tetrahydro-2H-cyclopenta[b]pyridin-2-one [a = 7.353(4) Å, b = 8.176(4) Å, c = 13.00(1) Å, β = 105.64(2)°, Z = 4, space group P21/c] and 2-oxo-1,2,5,6,7,8-hexahydroquinoline-3-carbonitrile [a = 5.9870(2) Å, b = 16.5280(5) Å, c = 9.6540(3) Å, β = 111.52(4)°, Z = 4, space group P21/c] are studied by the powder diffraction technique. The structures are solved using the grid search procedure and refined by the Rietveld method to R wp = 0.108 and 0.058, Rexp = 0.032 and 0.027, R p = 0.076 and 0.043, R b = 0.123 and 0.077, and χ2 = 7.9 and 3.64, respectively. In all the structures, hydrogen bonds involving the N, H, and O atoms of the pyridone fragment are formed.  相似文献   

20.
The compounds 5(2-thienyl)-and 5(3-thienyl)-dipyrromethane (1 and2, respectively) have been synthesized and isolated from the acid-catalyzed reaction between thiophenes-carboxaldehyde and pyrrole. Characterization by X-ray diffraction confirms molecular structures involving twoortho-substituted pyrrolyl and one thienyl groups. Both the compounds1 and2 were crystallized in the monoclinic space groupP21/n with cell parametersa = 5.7149(16) Å,b = 17.338(6) Å, andc = 11.785(4) Å, β = 98.466(9)°,V = 1155.0(6) Å3 for compound1; anda = 5.828(4) Å,b = 17.424(10) Å,c = 11.822(8) Å, β = 98.10(2)°, andV = 1188.4(13) Å3 for compound2.  相似文献   

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