Synthesis and stereochemical study of some biologically relevant phosphoglycerides: Dicarboxylic phosphatidylcholines and bis (diacylglycero) phosphoric acids

Abstract

Dicarboxylic (glutaryl or succinyl) phosphatidylcholines, and stereoisomeric bis (diacylglycero) phosphoric acids were synthesized. Their structures and stereoconfiguration were determinated by chemical, spectrometric and biochemical methods.     

Characterization of Molecular Structures Using Topological Indices

Abstract

The characterization of molecular structure using structural invariants has increased greatly over the last ten years. Specifically, topological indices have become more widely used in the quantification of molecular structure for use in quantitative structure-activity relationship studies, chemical documentation, and molecular similarity studies. The basis, calculation, and utility of topological indices has been examined, with an eye to the specific advantages and problems in their use. In addition, variable clustering and principal component analysis are examinee as two potential solutions to the problem of index intercorrelation.     

Two new heteroleptic ruthenium(II) dithiocarbamates: synthesis,characterization, DFT calculation and DNA binding

Two ruthenium(II) dithiocarbamates, cis-[Ru(DMP)₂L](BF₄), where L = 4-(4-methoxy-phenyl)piperazine-1-carbodithioate (1) and 4-(3-methoxyphenyl)piperazine-1-carbodithioate (2) and DMP = 2,9-dimethyl-1,10-phenanthroline, have been synthesized and characterized. The DNA-binding affinity of these metal complexes was investigated by UV–visible spectrophotometry with DNA-binding constants of 6.2 × 10⁴ M^?1 (1) and 1.2 × 10⁵ M^?1 (2) and electrostatic binding mode was confirmed by viscometric measurements. For insight into the structural differences, both complexes were studied computationally. B3LYP/LANL2DZ level of Density Functional Theory was used for the computational studies in Gaussian 09. The optimized bond lengths are in agreement with the reported values. Comparative computational studies reveal interesting transformations in bond lengths, angles, Natural Bond Orbital charges, molecular orbitals, Molecular Electro Static Potentials, and global chemical reactivity indices. Based on quantum chemical results a structure–activity relationship has been attempted.     

An ab initio Investigation of 2-Amino-2-imidazoline: A Key Moiety in Chemical and Biochemical Processes

Abstract

The 2-amino-2-imidazoline moiety is currently used not only in drugs, but also in insecticides, and fungicides. Ab initio calculations are performed to evaluate the molecular properties of the two tautomeric forms and the protonated form with extended basis sets ranging from 6-31G? to 6-311 + +G^?? at Hartree-Fock and density functional (BLYP and B3LYP) levels. Moller-Plesset perturbation is tested at the MP2/6-31G? level only. Optimized geometry structures, energies and thermochemical properties are generated. Basis set and correlation effects on geometries, tautomer equilibrium constant and protonation enthalpy are carefully analysed. Although observed for the isolated molecule, these results may be extrapolated to chemical and biochemical systems of interest.     

An Hptlc Approach to Quantitative Determination of Some Prostaglandins in Serum: Study in Normal and Asthmatic Subjects

Abstract

A modified HPTLC technique was applied in investigating venous peripheral blood concentrations of PGE1, FGE2, FGF1α, FGF2α, PGA1 and PGAP2 in three subjects with occupational asthma, undergoing specific bronchial challenge test with chemical sensitizers, as well as in two control subjects, exposed to the same test. The findings obtained show that the technique employed in our study is quite suitable and could be Useful to acquire more information on some biochemical events occurring during asthmatic responses to bronchial challenge.     

Thermodynamic Chemical Equilibria of Cadmium and Lead in the Aquatic System of the King Talal Reservoir (Jordan)

Abstract

The King Talal Reservoir (KTR) is partially recharged with sewage water effluent produced from the Khirbit-Es-Samra Treatment Plant. Because of the enrichment of the KTR water with nutrients, and the subsequent eutrophication, the effect of biochemical activity on the thermodynamic chemical equilibria of Cd(II) and Pb(II) was investigated. Twenty water samples were periodically collected from both surface and bottom waters of the KTR during the period 13/5/1986—9/11/1987. The water samples were analyzed for major chemical constituents, including Cd and Pb. Ionic speciation of each sample was carried out using the GEOCHEM program. The results indicated that surface and bottom waters were undersaturated with respect to CdCO₃ and Cd(OH)₂. The surface water was in equilibrium with PbCO₃ for the samples having log {(H⁺)/(HCO₃ ^?)} lower than — 4.4. At values higher than — 4.4, Pb(II) was probably precipitated as lead phosphate. The bottom water was, in general, in equilibrium with PbCO₃. However, some data points showed supersaturation. This was attributed to the unsteady state of the biochemical reactions affecting the (H⁺)/(HCO₃ ^?) ratio, which may well cause the apparent supersaturation with Pb(II).     

Dendrobeaniamine A,a new alkaloid from the Arctic marine bryozoan Dendrobeania murrayana

Abstract

The new guanidine alkaloid Dendrobeaniamine A (1) was isolated from the organic extract of the Arctic marine bryozoan Dendrobeania murrayana. The chemical structure of 1 was elucidated by spectroscopic experiments, including 1D and 2D NMR and HRESIMS analysis. Compound 1 is a lipoamino acid, consisting of a C₁₂ fatty acid anchored to the amino acid arginine. The bioactivity of 1 was evaluated using cellular and biochemical assays, but the compound did not show cytotoxic, antimicrobial, anti-inflammatory or antioxidant activities     

Joint QSAR Analysis Using the Free-Wilson Approach and Quantum Chemical Parameters

Abstract

A new quantitative structure-activity relationship (QSAR) technique combining the Free-Wilson method and constructed quantum chemical parameters was used to simulate the aqueous solubility (S _w), 1-octanol/water partition coefficient (K _ow) of 14 new synthesized benzanilide derivatives and their 96 h acute toxicity (EC₅₀) to Daphnia magna. The mode of action of the 14 selected compounds to Daphnia magna was shown to be a complex process involving a physical partition stage and a biochemical reaction stage. The results also indicated that the joint (QSAR) analysis was much effective than the original Free-Wilson method and Hansch method not only in predicting properties/toxicity, but also in investigating the mode of action of chemicals.     

Structural Relationships and Theoretical Study of Electron Transfer Properties of 1,3,2-Dithiazolyl Radicals with Fullerenes in Nanostructure [1,3,2-DTA(s)]@Cn Supramolecular Complexes

Various empty carbon fullerenes with different carbon atoms have been obtained and investigated. The dithiazolyl radicals have shown important electron-transfer properties. Topological indices are digital values that are assigned based on chemical composition. These values are purported to correlate chemical structures with various chemical and physical properties. They have been successfully used to construct effective and useful mathematical methods to establish clear relationships between structural data and the physical properties of these materials. In this study, the number of carbon atoms in the fullerenes was used as an index to establish a relationship between the structures of 2,3-naphthalene-1,3,2-dithiazolyl (NDTA), 2,3-quinoxaline-1,3,2-dithiazolyl (QDTA), and 1,2,5-thiazolo[3,4-b]-1,3,2-dithiazolo[3,4-b]pyridazin-2-yl (TDP-DTA), radicals, 1–3 as molecular conductor radicals and fullerenes C_n (n = 60, 70, 76, 82, and 86), which create [1,3,2-DTA(s)]@C_n, A-1 to A-5 (NDTA]@C_n), B-1 to B-5 ([QDTA]@C_n), and C-1 to C-5 ([TDP-DTA]@C_n). The relationship between the number of carbon atoms and the free energies of electron transfer (ΔG_et(1) to ΔG_et(4) ) are assessed using the Rehm–Weller equation for A-1 to A-5, B1 to B-5, and C-1 to C-5 supramolecular [1,3,2-DTA(s)]@C_n complexes. Calculations are presented for the four reduction potentials ( ^Red.E₁ to ^Red.E₄ ) of fullerenes C_n . The results were used to calculate the four free energies of electron transfer (ΔG_et(1) to ΔG_et(4) ) of supramolecular complexes A-1 to A-18, B-1 to B-18, and C-1 to C-18 (5–60) for fullerenes C₆₀ to C₃₀₀.     

GrInvIn in a nutshell

GrInvIn (Graph Invariant Investigator) is a software framework for teaching graph theory and for research in graph theory and graph theoretic chemistry. It enables users to construct graphs, compute invariants (e.g. topological indices in chemistry) and investigate relations between these concepts. The design of GrInvIn emphasizes easy usage and makes use of software engineering techniques that enable the user to easily extend the system (e.g. by adding new topological indices to investigate).     

Molecular Graph Matrices and Derived Structural Descriptors

Abstract

A number of recently graph matrices encoding in various ways the topological information is presented. Four graph operators are used to compute 19 topological indices for a set of 306 alkanes. The intercorrelation coefficients of the 19 topological indices are computed and used to identify highly intercorrelated indices.     

Molecular Similarity and Risk Assessment: Analog Selection and Property Estimation Using Graph Invariants

Abstract

Four molecular similarity measures have been used to select the nearest neighbor of chemicals in two data sets of 139 hydrocarbons and 15 nitrosamines, respectively. The similarity methods are based on calculated graph invariants which include atom pairs, connectivity indices and information theoretic topological indices. The property of the selected nearest neighbor by each method was taken as the estimate of the property under investigation. The results show that for these data sets, all four methods give reasonable estimates of the properties studied.     

A Review of Analytical Methods for Sulfonylurea Herbicides in Soil

Abstract

The sulfonylurea herbicides are a group of about twenty compounds used for the control of broad-leaved weeds and some grasses in cereal crops. These herbicides are non-volatile, and their water solubilities are pH dependent being greater in alkaline than in acidic solutions. Their soil adsorption is generally low, with leaching potential in alkaline field soils. Sulfonylurea herbicides are degraded in soils by both chemical and biochemical mechanisms. Chemical degradation is particularly important in acidic soils where herbicide degradation is considerably more rapid that in soils of pH > 7. Application rates in the order of 10 g ha^?1 necessitate analytical techniques capable of quantifying soil based residues in the sub μ kg^?1 levels. Analytical methodologies based on plant bioassays, and chemical extraction followed by gas chromatographic (GC), high performance liquid chromatographic (HPLC), and enzyme immunoassay techniques are described and discussed.     

Ab initio studies of NMR chemical shifts for calix[4]arene and its derivatives

Ab initio calculations are performed for the calix[4]arene (1) and its derivatives (2 and 3), in this study. ¹H and ¹³C NMR measured spectral data given in our previous work are used to elucidate the structures of the prepared calix[4]arenes (1–3). The molecular geometry and chemical shift are calculated by using ab initio calculations based on the Hartree-Fock (HF) and the density functional theory (DFT) in the ground state. The results obtained from both methods are in agreement with the experimental results. The results of molecular geometry and chemical shifts show that DFT approach is closer to the experimental data than HF method.     

The study of the relationship between the new topological index A(m) and the gas chromatographic retention indices of hydrocarbons by artificial neural networks

The newly developed topological indices A_m1-A_m3 and the molecular connectivity indices ^mX were applied to multivariate analysis in structure-property correlation studies. The topological indices calculated from the chemical structures of some hydrocarbons were used to represent the molecular structures. The prediction of the retention indices of the hydrocarbons on three different kinds of stationary phase in gas chromatography can be achieved applying artificial neural networks and multiple linear regression models. The results from the artificial neural networks approach were compared with those of multiple linear regression models. It is shown that the predictive ability of artificial neural networks is superior to that of multiple linear regression method under the experimental conditions in this paper. Both the topological indices ²X and A_m1 can improve the predicted results of the retention indices of the hydrocarbons on the stationary phase studied.