Application of atomic force microscopy to microbial surfaces: from reconstituted cell surface layers to living cells.

The application of atomic force microscopy (AFM) to probe the ultrastructure and physical properties of microbial cell surfaces is reviewed. The unique capabilities of AFM can be summarized as follows: imaging surface topography with (sub)nanometer lateral resolution; examining biological specimens under physiological conditions; measuring local properties and interaction forces. AFM is being used increasingly for: (i) visualizing the surface ultrastructure of microbial cell surface layers, including bacterial S-layers, purple membranes, porin OmpF crystals and fungal rodlet layers; (ii) monitoring conformational changes of individual membrane proteins; (iii) examining the morphology of bacterial biofilms, (iv) revealing the nanoscale structure of living microbial cells, including fungi, yeasts and bacteria, (v) mapping interaction forces at microbial surfaces, such as van der Waals and electrostatic forces, solvation forces, and steric/bridging forces; and (vi) probing the local mechanical properties of cell surface layers and of single cells.     

纳米接触过程中黏着规律的变化

本文应用大规模分子动力学方法, 模拟了两种具有不同粗糙形貌的、刚性球形探头与弹性平面基体之间的纳米尺度接触, 计算了探头与基体之间的拉离力和黏着功, 研究了接触过程中界面黏着力随载荷的变化规律, 分析了接触界面原子的法向应力分布. 研究发现, 原子级光滑接触的黏着力随着载荷的增大而线性增大, 而原子级粗糙接触的黏着力-载荷曲线分为以不同斜率增长的两个阶段. 相比于原子级光滑探头, 原子级粗糙探头与基体之间具有较小的拉离力和黏着功, 却在接触过程中形成了较大的黏着力. 因此, 拉离力和黏着功不能表征出纳米接触过程中原子吸引作用对界面法向力的贡献大小.     

On the development of a general force field for the molecular simulation of perfluoroethers

We report the development of a transferable force field for the accurate modelling of perfluoroethers. The potential model takes the general form in which separate bond bending and torsional terms describe the intramolecular interactions, with the addition of van der Waals and electrostatic terms to describe the non-bonded interactions. Ab initio quantum mechanical calculations were carried out to obtain the partial charges and intramolecular torsional and bending potentials. The van der Waals interactions are described by Lennard-Jones potentials, the parameters of which are optimized to reproduce the available experimental vapour-liquid equilibrium data. An extension of the Gibbs-Duhem method was used to speed up the optimization.     

范德华力对双壁碳纳米管轴向压缩屈曲行为的影响

使用分子动力学方法研究几种不同半径尺寸的单壁碳纳米管组成的双壁碳管，预测了其初始稳定构型；分析了其自由弛豫阶段的特征；并模拟了它们在轴向压缩载荷作用下的屈曲行为；研究了不同层间距导致的范德华力变化对屈曲行为的影响.采用Tersoff-Brenner势描述单壁碳纳米管内原子间作用，Lennard-Jones势描述内外层间的范德华相互作用.计算结果表明：在通常意义下的双壁管间距(约0.34 nm)外还可以存在稳定的双壁碳管构型，并且这些新的稳定构型表现出了不同的力学性质. 关键词： 双壁碳纳米管 分子动力学 屈曲     

Force spectroscopy in noncontact mode

We have analyzed the possibility of using noncontact scanning force microscopy (NCAFM) to detect variations in surface composition, i.e., to detect a ‘spectroscopic image' of the sample. This ability stems from the fact that the long-range forces, acting between the AFM tip and sample, depend on the composition of the AFM tip and sample. The long-range force can be magnetic, electrostatic, or van der Waals forces. Detection of the first two forces is presently used in scanning force microscopy technique, but van der Waals forces have not been used. We demonstrate that the recovery of spectroscopic image has a unique solution. Furthermore, the spectroscopic resolution can be as good as lateral one.     

Molecular forces caused by the confinement of thermal noise

We have investigated spontaneous surface instabilities of very thin polymer films. Film stability and the wavelength of the dominating unstable mode were found to depend sensitively on the media adjacent to the film. Our experimental results cannot be explained by van der Waals interactions alone. To account for the presence of an additional destabilizing force, we propose that the geometrical confinement of thermally excited acoustic waves gives rise to a force that is strong enough to destabilize thin films. This thermoacoustic effect is of similar magnitude as van der Waals forces.     

基于扫描电子显微镜的碳纳米管拾取操作方法研究

碳纳米管场效应管是未来纳米器件的发展方向,而制造纳米器件的前提是拾取碳纳米管,基于扫描电子显微镜(SEM)的微纳机器人操作系统能够实现碳纳米管拾取操作.本文建立拾取操作中碳纳米管与原子力显微镜(AFM)探针间范德瓦耳斯力力学模型,不同接触状态下范德瓦耳斯力越大越有利于拾取碳纳米管.在SEM视觉反馈图像中建立相对坐标系,首先提出倾角变值方法检测碳纳米管与AFM探针的接触状态,然后运用动态差值方法识别碳纳米管与AFM探针空间位姿并校正碳纳米管位姿,最后自下而上拾取碳纳米管.实验结果表明:拟合直线倾角变值较大时碳纳米管与AFM探针发生接触,动态差值变化为零时碳纳米管与AFM探针为空间线接触,在完全线接触模型下选择合适的接触角度、接触长度和拾取速度能够成功拾取碳纳米管.     

Surface deposition and coagulation efficiency of combustion generated nanoparticles in the size range from 1 to 10 nm

The size distribution of the nanoparticles formed in premixed ethylene–air flames and collected thermophoretically on mica cleaved substrates is obtained by atomic force microscopy (AFM). The distribution function extends from 1 to about 5 nm in non-sooting flames and in the soot pre-inception region of the richer flames, while it becomes bimodal and larger particles are formed in the soot inception region of the slightly sooting flames. The distribution is compared with the size distribution of nano-sized organic carbon (NOC) and soot particles, obtained by “in situ” multi-wavelength extinction and light scattering methods. The deposition efficiency is estimated from the differences between these two size distribution functions as a function of the equivalent diameter of the nanoparticles. Furthermore, the coagulation coefficient of particles in flame is obtained from the temporal evolution of the number concentration of the nanoparticles inside the flames. NOC particles, which are rapidly produced in locally rich combustion regions, have peculiar properties since their sticking coefficient both for coagulation and adhesion result to be orders of magnitudes lower than that expected by larger aerosols, like soot particles. The experimental results are interpreted by modelling the van der Waals interactions of the nanoparticles in terms of Lennard-Jones potentials and in the framework of the gas kinetic theory. The estimated adhesion and coagulation efficiencies are in good agreement with those calculated from AFM and optical data. The very low efficiency values observed for the smaller particles could be ascribed to the high energy of these particles due to their Brownian motion, which causes thermal rebound effects prevailing over adhesion mechanisms due to van der Waals forces.     

Exact solution of the frequency shift in dynamic force microscopy

The exact frequency shift of an AFM non-uniform probe with an elastically restrained root, subjected to van der Waals force, is derived. The original distributed system is considered and then its exact fundamental solutions and the general frequency equation are derived. Results are compared with those by the force gradient method and the perturbation method. The effects of several parameters on the sensitivity of measurement are investigated. Results show that the interpretation of frequency shift by using the force gradient method is unsatisfactory. The smaller the amplitude of oscillation and the tip–surface distance are, the larger the frequency shift. The design of a taper beam is recommended for increasing the sensitivity of measurement.     

Doping in poly(o-ethoxyaniline) nanostructured films studied with atomic force spectroscopy (AFS)

The study of intermolecular interactions at interfaces is essential for a number of applications, in addition to the understanding of mechanisms involved in sensing and biosensing with liquid samples. There are, however, only a few methods to probe such interfacial phenomena, one of which is the atomic force spectroscopy (AFS) where the force between an atomic force microscope tip and the sample surface is measured. In this study, we used AFS to estimate adhesion forces for a nanostructured film of poly(o-ethoxyaniline) (POEA) doped with various acids, in measurements performed in air. The adhesion force was lower for POEA doped with inorganic acids, such as HCl and H₂SO₄, than with organic acids, because the counterions were screened by the ethoxy groups. Significantly, the morphology of POEA both in the film and in solution depends on the doping acid. Using small-angle X-ray scattering (SAXS) we observed that POEA dissolved in a mixture of dimethyl acetamide exhibits a more extended coil-like conformation, with smaller radius of gyration, than for POEA in water, as in the latter POEA solubility is lower. In AFS measurements in a liquid cell, the force curves for a POEA layer displayed an attractive region for pH ≥ 5 due to van der Waals interactions, with no contribution from a double-layer since POEA was dedoped. In contrast, for pH ≤ 3, POEA was doped and the repulsive double-layer force dominated. With AFS one is therefore able to correlate molecular-level interactions with doping and morphology of semiconducting polymers.     

A new approach to the evaluation of Casimir and van der Waals forces in the transition region

This paper studies the incorporation of Casimir and van der Waals forces applied to a nanostructure with parallel configuration. The focus of this study is in a transition region in which Casimir force gradually transforms into van der Waals force. It is proposed that in the transition region, a proportion of both Casimir and van der Waals forces, as the interacting nanoscale forces, can be considered based on the separation distance between upper structure and substrate during deflection. Moreover, as the separation distance descends during deflection, the nanoscale forces could transform from Casimir to a proportion of both Casimir and van der Waals forces and so as to van der Waals. This is also extended to the entire surface of the nanostructure in such a way that any point of the structure may be subjected to Casimir, van der Waals or a proportion of both of them about its separation distance from the substrate. Therefore, a mathematical model is presented which calculate the incorporation of Casimir and van der Waals forces considering transition region and their own domination area. The mechanical behavior of a circular nano-plate has been investigated as a case study to illustrate how different approaches to nanoscale forces lead to different results. For this purpose, the pull-in phenomena and frequency response in terms of magnitude have been studied based on Eringen nonlocal elasticity theory. The results are presented using different values of the nonlocal parameter and indicated in comparison with those of the classical theory. These results also amplify the idea of studying the mechanical behavior of nanostructures using the nonlocal elasticity theory.     

Adsorption and manipulation of carbon onions on highly oriented pyrolytic graphite studied with atomic force microscopy

Carbon onions produced by DC arc discharge method were deposited on highly oriented pyrolytic graphite (HOPG) surface and their adsorption and manipulation was studied using an atomic force microscopy (AFM). Well-dispersed adsorption of carbon onions on HOPG surface was obtained and aggregations of onions were not observed. The van der Waals interaction between the onion and HOPG surface and that between two onions, were calculated and discussed using Hamaker's theory. The manipulation of adsorbed onions on HOPG surface was realized using the AFM in both the raster mode and the vector mode. The controllability and precision of two manipulation modes were compared and the vector mode manipulation was found superior, and is a useful technique for the construction of nano-scale devices based on carbon onions.     

Surface investigation of adhesive formulation consisting of UV sensitive triblock poly(styrene–b-butadiene–b-styrene) copolymer

Atomic force microscopy (AFM) analysis in conjunction with macroscopic studies such as peel testing and contact angle measurement have been undertaken to explain the nanomechanical properties of adhesive formulation consisting of triblock poly(styrene–b-butadiene–b-styrene) (SBS) copolymers. The cross-linking of this photosensitive copolymer was investigated by analyzing the mechanical and morphological changes of each phase induced by the UV exposure. Main result is that the adhesive properties are strongly influenced by the cross-linking of the polybutadiene (PB) phase leading to an increase in the surface stiffness without affecting the surface energy. AFM analysis shows that the adhesion force is mostly governed by the contact area between the adhesive and the probe. The surface mobility may explain the increase in adhesion for this pressure sensitive copolymer.     

The effect of substrate roughness on the static friction of CuO nanowires

The dependence of static friction on surface roughness was measured for copper oxide nanowires on silicon wafers coated with amorphous silicon. The surface roughness of the substrate was varied to different extent by the chemical etching of the substrates. For friction measurements, the nanowires (NWs) were pushed by an atomic-force microscope (AFM) tip at one end of the NW until complete displacement of the NW was achieved. The elastic bending profile of a NW during this manipulation process was used to calculate the ultimate static friction force. A strong dependence of static friction on surface roughness was demonstrated. The real contact area and interfacial shear strength were estimated using a multiple elastic asperity model, which is based on the Derjaguin–Muller–Toporov (DMT) contact mechanics. The model included vertical elastic flexure of NW rested on high asperities due to van der Waals force.     

Finite element simulation for estimating the mechanical properties of multi-walled carbon nanotubes

A finite element simulation technique for estimating the mechanical properties of multi-walled carbon nanotubes is developed. In the present modeling concept, individual carbon nanotube is simulated as a frame-like structure and the primary bonds between two nearest-neighboring atoms are treated as beam elements, the beam element properties are determined via the concept of energy equivalence between molecular dynamics and structural mechanics. As to the simulation of the interlayer van der Waals force which has intrinsic nonlinearity and complicated applying region, a simplifying method is proposed that the interlayer pressure caused by van der Waals force instead of the force itself is to be considered, and we make use of the linear part of the interlayer pressure near the equilibrium condition to avoid the nonlinearity in problem, then linear spring elements whose stiffness is determined by equivalent force concept can be utilized to simulate the interlayer van der Waals force such that significant modeling and computing effort is saved in performing the finite element analysis. Numerical examples for estimating the mechanical properties of nanotubes, such as axial and radial Young’s modulus, shear modulus, natural frequency, buckling load, etc., are presented to illustrate the accuracy of this simulation technique. By comparing to the results found in the literature and the possible analytical solutions, it shows that the obtained mechanical properties of nanotubes by the present method agree well with their comparable results. In addition, the relations between these mechanical properties and the nanotube size are also discussed.     

Measurements of metal-polymer adhesion properties with dynamic force spectroscopy

We investigate nanoscale interface properties using dynamic mode atomic force microscopy (AFM) operated in the frequency modulation mode in ultrahigh vacuum. The AFM tip was was functionalised by a thin layer of aluminium and the polymer was treated by plasma-etching. In the spectroscopy mode we could measure the adhesion properties between the metal and the polymer surfaces. We found that plasma-etching of the polymer resulted in strongly enhanced force interactions, indicating a chemical activation of the polymer surface. Values for the adhesion force and work of adhesion were measured on the nanometer scale and are compared to conventional macroscopic adhesion failure tests.     

On the compressive response of carbon nanotube tangles

The nonlinear bulk compressibility of entangled multiwalled carbon nanotubes is studied. The analogy with textile fibre assemblies is explored by means of the well established van Wyk model. In view of the small diameter of the nanotubes, the possible effect of adhesive van der Waals interactions at tube-tube contacts is analysed. It is found, however, that the contribution of adhesive contacts to the bulk stress should be negligible. Compression experiments are performed on multi-walled carbon nanotubes and show that van Wyk's model is able to describe the response, although the values of the dimensionless parameter k of van Wyk's model were lower than expected. There is indeed no indication that van der Waals interactions play any significant role.     

Lithium dipole properties and van der Waals constants using a pseudo spectral one-centre method

A pseudo spectral one-centre method is used to evaluate the moments of the dipole oscillator strength distribution for the ground-state Li atom and the van der Waals constants for the ground-state Li-Li, Li-He and Li-H interactions. Various combinations of C.I. type Li atom ground and excited ² P ⁰-state wavefunctions are used to construct the required pseudo spectral dipole oscillator strengths and excitation energies. The analysis of all the pseudo-state data yields recommended values for the Li dipole properties and van der Waals constants that are probably more accurate than those obtained previously. The calculations illustrate some of the advantages of the pseudo spectral approach for the evaluation of atomic and molecular properties and interaction energies.     

分子动力学模拟研究方解石表面润湿性反转机理

利用分子动力学模拟技术从分子尺度探究方解石表面润湿性反转机理.首先,研究方解石表面润湿性反转过程;而后,从原油分子-方解石表面与原油分子-原油分子/水分子相互作用两个方面系统揭示方解石表面润湿性反转机理.结果:(1)水分子能够驱离方解石表面弱吸附的非极性分子造成润湿性的改变,但不能驱离强吸附的极性分子使润湿性反转难以实现;(2)原油分子极性越强与方解石表面相互作用越强,极性分子与方解石表面之间主要为静电力,非极性分子与方解石表面之间主要为范德华力;(3)原油分子极性越相近分子之间的相互作用越强,分子极性相差越大分子之间的相互作用越弱.非极性分子之间主要是范德华力,极性分子之间主要是静电力;(4)原油分子在方解石表面和水分子的共同作用下形成乙酸-吡啶-水-甲苯-己烷的稳定吸附序列.本研究为靶向提高采收率技术的设计与应用提供理论基础.     

Lateral force microscopy in low normal force limit

We have studied frictional force between SiN tip and Si surface by using lateral force microscopy. The cantilever we have used has very low stiffness of 0.006 N/m, and the normal force acting on the surface was much lower than the attractive force such as van der Waals force. In this low normal force limit, it was found that the frictional force did not depend on the normal force. We suggest a calibration method to estimate the attractive force from the lateral force data in this limit. The estimated attractive force between Si sample and SiN tip with radius of 10 nm was 0.4 nN in flat region and 0.65 nN at the corner of a rectangular hole.