Differential interference contrast polarization anisotropy for tracking rotational dynamics of gold nanorods

We describe differential interference contrast (DIC) polarization anisotropy for tracking rotational dynamics of gold nanorod (AuNR) probes. DIC polarization anisotropy enabled us to reveal the unidirectional clockwise circular translocation of an AuNR attached to a kinesin-driven microtubule and to precisely determine the real-time orientation of the AuNR during the dynamic process.     

Probe dependence of spatially heterogeneous dynamics in supercooled glycerol as revealed by single molecule microscopy

Spatially heterogeneous dynamics in supercooled glycerol over the temperature range 198 K (1.04T(g))-212 K (1.12T(g)) is investigated using widefield single molecule (SM) fluorescence microscopy. Measurements are performed using three different perylenedicarboximide probes to investigate whether probe size and probe-host interactions affect breadth of heterogeneity reported in the glassy host by such SM experiments. Rotational relaxation times of single probe molecules are measured, and for all probes, log-normal distributions of relaxation times are found. No significant change in relaxation time distribution as a function of temperature is evident for a given probe. However, across probes, probe rotational relaxation time is correlated with breadth of heterogeneous dynamics reported. Molecules that undergo changes in dynamics are identified using two complementary approaches that interrogate time scales between 10(3) and 10(6) τ(α), with τ(α) the structural relaxation time of glycerol. Exchange is found on the shortest time scales probed (~30 τ(c), with τ(c) the rotational correlation time of the probe) and is relatively temperature and probe independent. No evidence is found for additional exchange occurring on the longest time scales interrogated. Taken together with the fact that probes that rotate the fastest report the greatest breadth of spatially heterogeneous dynamics in the system, this indicates that exchange times reported from analysis of SM linear dichroism trajectories as described here are upper bounds on the average exchange time in the system.     

Determining the full three-dimensional orientation of single anisotropic nanoparticles by differential interference contrast microscopy

Keeping track: By combining differential interference contrast (DIC) image pattern recognition with DIC polarization anisotropy, the exact full three-dimensional angular information of individual tilted gold nanorods positioned in the focal plane of the objective lens can be readily determined. The angular rotational modes and kinetics of individual in-focus gold nanorods can thus be resolved dynamically.     

Exponential probe rotation in glass-forming liquids

Using time resolved optical depolarization, we have studied the rotational behavior of molecular probes in supercooled liquids near the glass transition temperature T(g). Simultaneously, the dynamics of the liquid immediately surrounding these rigid probes is measured by triplet state solvation experiments. This direct comparison of solute and solvent dynamics is particularly suited for assessing the origin of exponential orientational correlation functions of probe molecules embedded in liquids which exhibit highly nonexponential structural relaxation. Polarization angle dependent Stokes shift correlation functions demonstrate that probe rotation time and solvent response time are locally correlated quantities in the case of smaller probe molecules. Varying the size of both guest and host molecules shows that the size ratio determines the rotational behavior of the probes. The results are indicative of time averaging being at the origin of exponential rotation of probes whose rotational time constant is slower than solvent relaxation by a factor of 20 or more.     

Analysis of the exponential character of single molecule rotational correlation functions for large and small fluorescence collection angles

Coarse-grained molecular dynamics simulations and single molecule fluorescence microscopy experiments have been performed in order to investigate the influence of the numerical aperture (NA) of the microscope objective on the exponential character of the rotational correlation functions of probes embedded in complex matrices. The results obtained by using either a dry lens (NA=0.95) or an oil objective (NA=1.4) show that, in the moderately (simulations) and deeply (experiment) supercooled melts, the rotational (linear dichroism) correlation functions of the single molecules (SMs) exhibit a nonexponential character. Furthermore, by fitting Kohlrausch-Williams-Watt functions to the correlation curves, the stretching parameters turn out to be very similar for both types of objectives. Our results demonstrate that the nonexponentiality is intrinsic to the complex rotational dynamics of the SM in the supercooled solid and point to the validity of the use of a high NA dry lens to perform such experiments.     

Electrostatic influence on rotational mobilities of sol-gel-encapsulated solutes by NMR and EPR spectroscopies

The rotational mobilities of small solute molecules encapsulated in tetramethyl orthosilicate (TMOS) sol-gels have been investigated by EPR spectroscopy of encapsulated nitroxide probes and by high-resolution NMR spectroscopic measurements of transferred NOE's (trNOE's), of T(1)'s, and of T(1)'s in the rotating frame (T(1)rho). The two spectroscopic methods are sensitive to motions on different time scales and hence, are nicely complementary. Suites of neutral, positively, and negatively charged nitroxide probes (EPR) and of simple diamagnetic small molecules (NMR) were selected to disclose influences of electrostatic interactions with the sol-gel walls and to probe the presence of multiple populations of molecules in distinct regions of the sol-gel pores. For neutral and negatively charged solute probes, both techniques disclose a single population with a significantly increased average rotational correlation time, which we interpret at least in part as resulting from exchange between free-volume and transiently immobilized surface populations. The electrostatic attraction between cationic probes and the negatively charged sol-gel walls causes the positively charged probes to be more effectively immobilized and/or causes a greater percentage of probes to undergo this transient immobilization. The EPR spectra directly disclose a population of cationic probes which are immobilized on the X-band EPR time scale: tau(c) greater than or approximately equal 10(-7) s. However, NMR measurements of trNOE's and of T(1)rho demonstrate that this population does exchange with the free-volume probes on the slower time scale of NMR. This approach is equally applicable to the study of solutes within other types of confined spaces, as well.     

EPR spin probe and spin label studies of some low molecular and polymer micelles

The rotational mobility of spin probes of different shape and size in low molecular and polymer micelles has been studied. Several probes having nitroxide fragment localized either in the vicinity of micelle interface or in the hydrocarbon core have been used. Upon increasing the number of carbon atoms in hydrocarbon chain of detergent from 7 to 13 (sodium alkyl sulfate micelles) or from 12 to 16 (alkyltrimethylammonium bromide micelles) the rotational mobility of spin probes is decreased by the factor 1.5–2.0. The spin probe rotational mobility in polymer micelles (the complexes of alkyltrimethylammonium bromides and polymethacrylic or polyacrylic acids) is less than mobility in free micelles of the same surfactants. The study of EPR-spectra of spin labeled polymethacrylic acid (PMA) indicated that formation of water soluble complexes of polymer and alkyltrimethylammonium bromides in alkaline solutions (pH 9) does not affect the polymer segmental mobility. On the other hand, the polymer complexes formation in slightly acidic water solution (pH 6) breaks down the compact PMA conformation, thus increasing the polymer segmental mobility. Possible structures of polymer micelles are discussed.     

Real-time dynamics of label-free single mast cell granules revealed by differential interference contrast microscopy

We demonstrate the capability of differential interference contrast (DIC) microscopy as a simple and useful tool for studying cellular events without fluorescence labeling. By coupling an advanced DIC microscope to a computer-controlled motorized vertical stage and a high-speed, high-resolution CCD camera, real-time three-dimensional monitoring is possible in a high-throughput manner. The performance among three modes of microscopy, bright-field, dark-field and DIC, in terms of horizontal resolving power and vertical sectioning was investigated. As a model, exocytosis of rat peritoneal mast cells was recorded on the subsecond time scale. Three-dimensional tracking of granules during degranulation was achieved and granule–granule fusion before plasma membrane fusion was recorded. Electronic Supplementary Material Supplementary material is available for this article at     

Differential interference contrast microscopy for real-time dynamics and manipulation of single cells in microchannels

Nomarski differential interference contrast (DIC) microscopy was used for real-time dynamics of intact single cells in various microchannels for adaptation to microfluidic chip application. The cheek cell was chosen as a model, single cell and the dynamics was measured at the microchannels. The image resolution of single cell was shaper and more distinct in DIC than in conventional microscopy. The individual single living cells were also manipulated by both hydrodynamic and electrokinetic flow-driving forces at the microchannels. The DIC contrast was enhanced according to the order of round-, square-, and rectangle-type microchannels. The velocity of the single living cell was consistently increased with increasing electric field strength and pH. However, the velocity of cell was decreased with increasing run buffer concentration. The driving direction of the individual single cell was simply controlled by changing the polarity of the applied voltage and the electric field strength. The cells were consistently manipulated in the microchannel under the co-application of the low electric field of 2.44 V/cm, instead of the solo application of the hydrodynamic force.     

Orientation and alignment moments in two-color polarization spectroscopy

A theoretical analysis of two-color polarization spectroscopy (TCPS) is presented as an extension of a previous analysis of one-color PS. Three commonly used schemes in which pump and probe transitions share a common level are considered. Diagrammatic techniques are used to isolate the photon interaction sequences that can contribute to the signal. A perturbation-theory analysis expressing the signal in terms of spherical tensor moments is applied. The analysis emphasises the significance of orientation and alignment tensor moments of rotational angular momentum and their collisional evolution. The assumed context is transitions between single rotational states of gas-phase molecules that subsequently suffer discrete collisions. The time scale of the measurements is assumed to be long relative to the periods of molecular motion, as would typically be the case for signals excited by nanosecond-pulsed lasers from samples at moderate pressures. The Doppler motion of the probed species is included, as is an analytical solution to the integration over the Maxwell-Boltzmann distribution of velocities. The effects of nuclear hyperfine depolarization and velocity-changing collisions are discussed. It is shown that when pump- and probe-laser pulses are separated in time, TCPS creates and probes either orientation or alignment of rotational angular momentum in the common level shared by pump and probe transitions. Example simulations of one- and two-color polarization spectroscopies are included to demonstrate the resulting simplification of the measured signal using TCPS. TCPS is therefore a viable spectroscopic technique for the determination of rotational angular momentum orientation and alignment relaxation rates in molecular gases, of interest because they are sensitive probes of inelastic collisions.     

Rotational dynamics and conformational kinetics in liquid crystals

Two particular aspects of solute dynamics in ordered media are analysed on the basis of the solution of multivariate diffusion equations: the effects of the solvation dynamics on the rotational motions of dipolar probes in liquid crystal solvents, and the alteration of reaction pathways in isomerization kinetics caused by the solvent order. The introduction of a suitable solvent coordinate allows the interpretation of high frequency contributions in the rotational correlation functions observed by spectroscopic techniques, namely dielectric dispersion, IR and Raman spectroscopy, ESR lineshapes and optical Kerr effect. For molecular systems undergoing conformational changes, a method is offered to evaluate the modification of the torsional barriers resulting from the anisotropic torques modulated by the molecular shape changes along the reaction coordinate.     

Mobility of spin probes having a primary,secondary, tertiary,or quaternary amino group in drawn and undrawn nylon 6 film

The mobility of spin probes having a secondary, tertiary, or quaternary amino group in dried nylon films was investigated by means of electron spin resonance (ESR) measurements and compared with the behavior of previously investigated spin probes having a primary amino group, a carboxylate group, or a sulfate group. The spin probes having a primary or secondary amino group showed effects of drawing on the mobility, while the other probe molecules did not. This result could be interpreted by considering the interactions between the spin probes and the nylon chains. In the undrawn nylon film, the mobilities of the nonionic spin probes were almost the same, and smaller than those of the charged spin probes, suggesting that the location in the nylon film is different for the uncharged and charged spin probes. These results are discussed in detail using separation of extrema of the ESR spectra, rotational correlation times, and anisotropy parameters.     

Rotational dynamics and conformational kinetics in liquid crystals

Abstract

Two particular aspects of solute dynamics in ordered media are analysed on the basis of the solution of multivariate diffusion equations: the effects of the solvation dynamics on the rotational motions of dipolar probes in liquid crystal solvents, and the alteration of reaction pathways in isomerization kinetics caused by the solvent order. The introduction of a suitable solvent coordinate allows the interpretation of high frequency contributions in the rotational correlation functions observed by spectroscopic techniques, namely dielectric dispersion, IR and Raman spectroscopy, ESR lineshapes and optical Kerr effect. For molecular systems undergoing conformational changes, a method is offered to evaluate the modification of the torsional barriers resulting from the anisotropic torques modulated by the molecular shape changes along the reaction coordinate.     

Effect of instant controlled pressure drop treatments on the oligosaccharides extractability and microstructure of Tephrosia purpurea seeds

The study of the oligosaccharides extracted from Tephrosia purpurea seeds was undertaken using the instant controlled pressure drop (DIC) as a pre-treatment prior to conventional solvent extraction. This DIC procedure provided structural modification in terms of expansion, higher porosity and improvement of specific surface area; diffusion of solvent inside such seeds and availability of oligosaccharides increase notably. In this paper, we investigated and quantified the impact of the different DIC operative parameters on the yields of ciceritol and stachyose extracted from T. purpurea seeds. The treatment could be optimized with a steam pressure (P) (P=0.2 MPa), initial water content (W) (W=30% dry basis (DB)) and thermal treatment time (t) (t=30s). By applying DIC treatment in these conditions, the classic process of extraction was intensified in both aspects of yields (145% of ciceritol and 185% of stachyose), and kinetics (1h of extraction time instead of 4h for conventional process). The scanning electron microscopy micrographs provided evident modifications of structure of seeds due to the DIC treatment.     

Microstructures and supramolecular structures of butadiene-nitrile rubbers: Paramagnetic-probe study

The chain microstructures and supramolecular structures of butadiene-nitrile rubbers are studied by ESR spectroscopy. On the temperature dependences of the rotational mobility (correlation time τ_c) of paramagnetic probes differing in size (2,2,6,6-tetramethylpiperidine-1-oxyl and 4-benzoate-2,2,6,6-tetramethylpiperidine-1-oxyl), relaxation transitions are observed. It is shown that there is a correlation between the Arrhenius parameters of rotational mobility of radicals and the copolymer composition and that different brands of rubbers differ in microstructure and supramolecular structure.     

Fluorescence anisotropy of ionic probes in AOT reverse micelles: influence of water droplet size and electrostatic interactions on probe dynamics

Fluorescence anisotropies of two structurally similar ionic probes, rhodamine 110 and fluorescein, were measured in di(2-ethylhexyl) sodium sulfosuccinate (AOT) reverse micelles as a function of the mole ratio of water to surfactant W. This study was undertaken to explore the influence of water droplet size and electrostatic interactions on the rotational diffusion of the probe molecules. It was noticed that at W = 1 and 2, the anisotropy decays of both the probes display single-exponential behavior and for a particular value of W, the time constants sensed by rhodamine 110 and fluorescein are identical. Moreover, an increase in the reorientation time was observed from W = 1 to 2. These observations indicate that, at W = 1 and 2, it is the overall rotation of micelle which is responsible for the decay of the anisotropy and also rule out the possibility of internal rotation of the probes within the reverse micelles. However, from W = 4 to 20, the anisotropy decays of the probes could only be described by a biexponential function with two time constants. The rotational diffusion of rhodamine 110 and fluorescein in the above-mentioned range of W was rationalized using the two-step model. The average reorientation time decreases with an increase in W for both the probes, and this decrease is pronounced in the case of fluorescein compared to that in rhodamine 110. The decrease in the average reorientation time with W is due to the change in the micellar packing within the core. The significant reduction in the average reorientation time of fluorescein is a consequence of repulsive electrostatic interactions between the negatively charged probe and the anionic head groups of the surfactant AOT.     

The study of rotational mobility of stable nitroxyl radicals in polyvinylacetate

Analyses of the rotational diffusion characters of free and bonded nitroxyl radicals in polyvinylacetate were carried out. The radical rotational character essentially depends on the molecular sizes of the radicals. The movement of the “small” radical is matched by the arbitrary jump tumbling model. The rotation of the “large” radical (both probe and label) occurs by the Brownian rotational diffusion mechanism. The correlation times in the slow-motion region are calculated by taking into account the radical rotation mechanism. Comparison of the τ_c values for the free and bonded radicals with those obtained by the NMR technique shows that movements of the spin probes and labels depend not only on the short polymer segments but on other factors also.     

Dynamic light scattering by optically anisotropic colloidal particles in polyacrylamide gels

The translational and rotational motions of optically anisotropic spherical particles embedded in cross-linked polyacrylamide gels is studied by dynamic light scattering. The particles are liquid crystal droplets solidified in the nematic phase. The amount of cross linkers is varied to cross the sol-gel transition where the system becomes nonergodic for both translational and rotational diffusion modes of the probes. The translational and rotational dynamic correlation functions are obtained by measuring the intensity correlation function between crossed polarizers in the parallel and perpendicular geometries. Data from nonergodic systems is analyzed using an extension, to include rotations, of the method of Pusey and van Megen [Physica A 157, 705 (1989)]. Both diffusion modes are observed to be arrested as the rigidity of the gel increases.     

Discrete and heterogeneous rotational dynamics of single membrane probe dyes in gel phase supported lipid bilayer

In order to probe the local dynamics of lipid bilayers in the gel phase, we measured the rotational time trajectories of a membrane probe, diI(3), in supported bilayers of DPPC (1,2-dipalmitoyl-sn-glycero-3-phosphocholine) using single molecule fluorescence polarization imaging. diI(3) has two hydrocarbon tails that mimic phospholipid tails and has its transition dipole moment lying mostly on the plane of the membrane; hence it is an excellent probe for rotational dynamics in membranes. Above the transition temperature, the probes are laterally mobile and do not display polarized emission. In the gel phase below the transition temperature, lateral mobility is severely reduced and the emission becomes polarized with its polarization direction changing in the milliseconds time scale. Molecule by molecule analysis of the rotational time scales revealed significant heterogeneities among molecules, much larger than would be due to statistical noise. Control experiments using small unilamellar vesicles suggest that the heterogeneities are not caused by surface interactions and are intrinsic to the gel phase membrane. The rotational dynamics is strongly temperature dependent and the thermally activated state for the rotational motion has a large entropic barrier (> 30kB), indicating that relatively large local disorder is required for the rotational motion to occur. Rotational hopping between discrete angles has been observed at the lowest temperatures (approximately 10 degrees C). Our results suggest that the gel phase membrane is not uniform at the microscopic level but is highly dynamic with the rigidity of local environments constantly changing.     

Reaction-based two-photon probes for in vitro analysis and cellular imaging of monoamine oxidase activity

Reaction-based fluorescent probes for monoamine oxidases A and B are developed based on a new two-photon absorbing compound and its precursor. The probes show turn-on fluorescence response to the enzymes owing to the two-photon absorbing compound produced by the enzymatic activity, as monitored by one- as well as two-photon microscopy for the first time.