Cytotoxicity of an unprecedented brominated oleanolide and a new furoceramide from the Cameroonian spice,Echinops giganteus

A preliminary study on Echinops giganteus (Asteraceae) showed that the methanolic extract has interesting cytotoxicities against a panel of cancer cell lines. From this extract, a lignan, a flavonoid and a polyacetylenic thiophene identified were three times less cytotoxic than the extract. In the search of the metabolites responsible for the bioactivity, a new harvested E. giganteus was subjected to a phytochemical study using chromatographic methods. In the course of the work, two new compounds: a brominated oleanolide (1) and a tetrahydrofurano-ceramide (2) were obtained along with β-amyrin acetate (3), 2-(penta-1,3-diynyl)-5-(4-hydroxybut-1-ynyl)-thiophene (4), 2-(penta-1,3-diynyl)-5-(3,4-dihydroxybut-1-ynyl)-thiophene (5) and 4-hydroxy-2,6-di-(3′,4′-dimethoxyphenyl)-3,7-dioxabicyclo-(3.3.0)octane (6). Their structures were determined on the basis of NMR spectroscopy and mass spectrometry data in conjunction with those reported in the literature. The cytotoxicity of 1, 2 and 5 was evaluated by employing resazurin assay against a panel of cancer cell lines with IC₅₀ values in range 6.12 ± 0.46–46.96 ± 3.61 μM.     

Entropy drives an attached water molecule from the C- to N-terminus on protonated proline

Results from infrared photodissociation (IRPD) spectroscopy and kinetics of singly hydrated, protonated proline indicate that the water molecule hydrogen bonds preferentially to the formally neutral carboxylic acid at low temperatures and at higher temperatures to the protonated N-terminus, which bears the formal charge. Hydration isomer populations obtained from IRPD kinetic data as a function of temperature are used to generate a van't Hoff plot that reveals that C-terminal binding is enthalpically favored by 4.2-6.4 kJ/mol, whereas N-terminal binding is entropically favored by 31-43 J/(mol K), consistent with a higher calculated barrier for water molecule rotation at the C-terminus.     

A path from I(h) to C1 symmetry for C20 cage molecule

The symmetry of the C20 cage is studied based on the intrinsical relationship among point groups (Bradley, C. J.; Cracknell, A. P. The Mathematical Theory of Symmetry in Solids; Claredon Press: Oxford, 1972). The structure of the C20 cage with I(h) symmetry is constructed, as are eight other structures with subgroup symmetry. A path from I(h) symmetry to C1 symmetry is obtained for the closed-shell electronic state, and the structure with D2h symmetry is the most stable on this path. Using the D2h structure the correlation energy correction is studied on the condition of restricted excitation space at the CCSD(T) level. We obtain curves on the relation between the orbital numbers and the total energy at the CCSD(T), CCSD, and MP2 level, respectively. The results of these curves obtained from MP2 and CCSD(T) methods have the same tendency, while the results of CCSD gradually diverge with an increase in orbital numbers. When the orbitals used in the calculation reach 460, the total energy is -759.644 hartree at MP2 level and is -759.721 hartree by the CCSD(T) method. From the calculation results, we find that a large basis set can improve the reliability of the MP2 method, and to restrict excitation space is necessary when using the CCSD(T) method.     

Single molecule charge transport: from a quantum mechanical to a classical description

This paper explores charge transport at the single molecule level. The conductive properties of both small organic molecules and conjugated polymers (molecular wires) are considered. In particular, the reasons for the transition from fully coherent to incoherent charge transport and the approaches that can be taken to describe this transition are addressed in some detail. The effects of molecular orbital symmetry, quantum interference, static disorder and molecular vibrations on charge transport are discussed. All of these effects must be taken into account (and may be used in a functional way) in the design of molecular electronic devices. An overview of the theoretical models employed when studying charge transport in small organic molecules and molecular wires is presented.     

Resonance energy transfer from a dye molecule to graphene

We study the distance dependence of the rate of resonance energy transfer from the excited state of a dye to the pi system of graphene. Using the tight-binding model for the pi system and the Dirac cone approximation, we obtain the analytic expression for the rate of energy transfer from an electronically excited dye to graphene. While in traditional fluorescence resonance energy transfer, the rate has a (distance)(-6) dependence, we find that the distance dependence in this case is quite different. Our calculation of rate in the case of the two dyes, pyrene and nile blue, shows that the distance dependence is Yukawa type. We have also studied the effect of doping on energy transfer to graphene. Doping does not modify the rate for electronic excitation energy transfer significantly. However, in the case of vibrational transfer, the rate is found to be increased by an order of magnitude due to doping. This can be attributed to the nonzero density of states at the Fermi level that results from doping.     

Remarks on the concept of an atom in a molecule and on charge transfer between atoms on molecule formation

Density functional theory provides a natural and rigorous definition of an atom in a molecule in its ground state: The molecular electron density is the sum of atomic densities, the atoms have the same chemical potential as does the molecule, and the atoms are minimally promoted from their ground states. These atoms in general are not spherical, and in general they bear nonintegral charges. Charge transfer on molecule formation is thereby uniquely defined. Calculations by Palke and by Guse are reviewed, in which the hydrogen atom is identified in the hydrogen molecule.     

A linearized path integral description of the collision process between a water molecule and a graphite surface

Quantum effects in the scattering and desorption process of a water molecule from a graphite surface are investigated using the linearized path integral model. The graphite surface is quantized rigorously using the fully quantum many-body Wigner transform of the surface Boltzmann operator, while the water molecule is treated as rigid. Classical dynamics with these quantized initial conditions show that quantizing the surface at 100 and 300 K results in markedly different results, compared to a fully classical analysis. The trapping probability (defined as the probability of multiple encounters with the surface) is not sensitive to the choice of dynamical treatment, but the residence time on the surface is much shorter in the quantum case. At 300 K the transiently trapped molecules desorb from the surface with a rate constant which is 60-70% larger than the corresponding classical value. Lowering the surface temperature to 100 K decreases the quantum rate constant by approximately a factor of 3 while all trapped molecules stick to the surface in the classical case. The stability of the quantum initial state for the highly anisotropic graphite crystal is discussed in detail as well as the dynamical consequences of energy redistribution during the scattering process. The graphite surface application demonstrates that the Boltzmann operator Wigner transform for a system with 900 degrees of freedom can be obtained by the so-called gradient implementation [Poulsen et al. J. Chem. Theory Comput. 2006, 2, 1482] of the underlying Feynman-Kleinert effective frequency theory, an implementation that only requires a force and potential routine for the system at hand, and hence is applicable to any molecule-surface collision problem.     

Single molecule magnets: from thin films to nano-patterns

Single molecule magnets (SMM) are a class of molecules exhibiting magnetic properties similar to those observed in conventional bulk magnets, but of molecular origin. SMMs have been proposed as potential candidates for several technological applications that require highly controlled thin films and patterns. Here we present an overview of the most important approaches for thin film growth and micro(nano)-patterning of SMM, giving special attention to Mn(12) based molecules. We present both conventional approaches to thin film growth (Langmuir-Blodgett, chemical approach, dip and dry, laser evaporation), patterning (micro-contact printing, deposition on patterned surface, moulding of homogeneous films) and new methods specifically developed for SMM (lithographically controlled wetting, lithographically controlled de-mixing).     

Tautocrowns: a concept for a sensing molecule with an active side-arm

A new sensing molecule containing aza-15-crown-5 as a receptor and 4-(phenyldiazenyl)naphthalen-1-ol as a signal converter has been synthesized. In the free ligand, the hydrogen bonding between the tautomeric OH group and the nitrogen atom from the macrocycle fully shifts the tautomeric equilibrium towards the enol form. The complexation reverses the equilibrium as a result of the strong interaction between the metal ion captured in the macrocyclic moiety and the tautomeric carbonyl group. The complex formation is accompanied by strong bathochromic (between 60 and 100 nm) and hyperchromic effects on the absorption spectra. Obviously, the tautomeric OH/CO groups play the role of an active side-arm in the complexation, supporting it via formation of a 3D cavity and giving possibility for ejection of the guest compound under stimuli to shift the tautomeric process back.     

Studying and switching electron transfer: from the ensemble to the single molecule

We report here on the systematic investigation of photoinduced intramolecular electron transfer (IET) in a series of donor-bridge-acceptor molecules as a means of understanding electron transport through the bridge. Perylenebisimide chromophores connected by various oligophenylene bridges are studied because their electron-transfer behavior can readily be monitored by following changes in the fluorescence intensity. We find dramatic switching of the IET behavior as the solvent polarity (dielectric constant) is increased. By combining steady-state and time-resolved fluorescence spectroscopy in a variety of solvents at multiple temperatures with standard theories of electron transfer, we determine parameters governing the IET behavior of these dimers, such as the electronic coupling through the bridges. We also deploy available ab initio quantum chemical methods to calculate the through-space component of the electronic coupling matrix element. Single-molecule investigations of the electron-transfer behavior also show that IET can be switched reversibly by a similar mechanism in an isolated individual molecule.     

Building symmetric polynomials to fit a potential energy surface: application to an A_2B_2 molecule

We present a method to build potential energy surfaces with the correct permutational symmetry of identical atoms. It is explained and applied to an A $_2$ B $_2$ molecular system. This method allows us to use different reference geometries, which are often needed in large molecules.     

Small molecule directed aggregation of a heme peptide on gold: an STM study

Microperoxidase 11 was adsorbed on Au(111) from basic aqueous solutions containing pure heme peptide and co-added stoichiometric amounts of exogenous neutral and ionic ligands. The addition of small molecules to MP11 produced different aggregate structures that were easily differentiated by STM. In the absence of a complexing agent, the MP-11 formed large clusters of metallopeptide molecules on the gold surface. With neutral imidazole in solution the MP11 aggregated into regular elongated structures (nano-épis) on the substrate. When S(2-) is used as coupling agent, single heme peptide molecules are isolated with identifiable porphyrin ring and substructure in the peptide chain.     

Identification from a combinatorial library of a small molecule that selectively induces apoptosis in cancer cells

The selective induction of death in cancer cells is a major challenge in modern medicine. In this communication we describe the synthesis of an 88-membered combinatorial library, and the subsequent evaluation of these compounds for their ability to selectively induce apoptosis in cancerous cells. A compound was identified from the library that induces apoptosis in U-937 and HL-60 cell lines. This compound is a remarkably selective pro-apoptotic agent for these cancer cell lines, as it does not induce significant death in noncancerous white blood cells, even at concentrations as high as 1000 muM.     

Binding affinity of a small molecule to an amorphous polymer in a solvent. Part 2: preferential binding to local sites on a surface

Crystallization, a separation and purification process, is commonly used to produce a wide range of materials in various industries, and it usually begins with heterogeneous nucleation on a foreign surface in industrial practice and most other circumstances. Recent studies show that amorphous polymeric substrates are useful in controlling crystallization and selectively producing pharmaceutical polymorphs. In our previous publication, we investigated the possible correlation of the binding affinity of one molecule to key binding sites (local binding), and the possibility of using this binding affinity to guide the selection of polymers promoting heterogeneous nucleation. The studied systems were aspirin binding to four nonporous cross-linked polymers in ethanol-water 38 v% mixture. Cross-linked with divinylbenzene (DVB), these polymers were poly(4-acryloylmorpholine) (PAM), poly(2-carboxyethyl acrylate) (PCEA), poly(4-hydroxylbutyl acrylate) (PHBA), and polystyrene (PS). We discovered that the trend of the magnitudes of the average free energies of binding to the best sites is very similar to that of heterogeneous nucleation activities. This Article aims to investigate whether or not local binding to key sites is the important variable to describe heterogeneous nucleation as opposed to the overall/average binding affinity of molecules to a surface, and to investigate the possibility of using the overall binding affinity to guide the selection of polymers. We used the polymer surfaces generated from our previous study to calculate the overall binding affinity of aspirin molecules to the surface as measured by the preferential interaction coefficients of aspirin (1 m) to these polymers. We discovered that the trend of the average preferential interaction coefficients does not correlate as well to that of heterogeneous nucleation activities as the free energies of binding to the best sites. We also computed the average numbers of aspirin molecules associated with the areas of the surfaces' best binding sites and found that they correlate better to heterogeneous nucleation activities than the average preferential interaction coefficients. These results further support that local binding is indicative of heterogeneous nucleation. Moreover, we found a weak trend of the distance order parameters of the aspirin molecules to be similar that of heterogeneous nucleation activities. Our results from the two-part study suggest the importance of local binding to heterogeneous nucleation as well as the possibility of using the binding affinity to the local area (the free energy of binding to the best site and the number of nucleating molecules associated with the area of the best binding site) and the distance order parameters to guide the selection of polymers.     

From whole body to molecule: an integrated approach to the regulation of metabolism and growth

This paper considers the use of whole-body calorimetry in a wide context, as one of a range of techniques available for advancing our knowledge of the regulation of energy metabolism and growth. This integrated approach should lead to a greater depth of understanding by investigating the mechanisms by which responses of the whole animal depend on events at the tissue, cellular and molecular levels.

Two critical stages of mammalian development, the perinatal and early postnatal periods, are discussed. Particular attention is paid to skeletal muscle and the extent to which myofibre differentiation and hypertrophy, and hence muscle function and energetic efficiency, can be modified by nutrition and the thermal environment. In view of the crucial roles of thyroid hormones, growth hormone and insulin-like growth factor-I in regulation of metabolism and growth, the role of the endocrine system is also considered. These studies have important implications for survival and optimal health of humans and other animals.     

An investigation of definitions of the charge on an atom in a molecule

A study has been made of three different procedures used to define the charge on an atom in a molecule. It was found that none of the three is completely satisfactory, although that proposed by Löwdin seemed to give the best results. The effect of certain other factors, such as the nature of the basis set and the inclusion of the Madelung potential, was also investigated.

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Zusammenfassung Drei verschiedene Methoden zur Bestimmung der Ladung eines Atoms in einem Molekül werden untersucht. Keine der drei Methoden kann als völlig zufriedenstellend bezeichnet werden. Die besten Ergebnisse scheint die von Löwdin vorgeschlagene Methode zu liefern. Der Einfluß verschiedener Faktoren wie Art der Basis und Berücksichtigung des Madelung-Potentials werden untersucht.

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Résumé Etude de trois procédés différents pour la définition de la charge sur un atome dans une molécule. Aucun des trois procédés n'est complètement satisfaisant, celui proposé par Löwdin semblant donner cependant les meilleurs résultats. L'effet de certains autres facteurs: nature de la base, introduction du potentiel de Madelung a aussi été étudié.