A hydrogen‐bonded heterodimer of 1‐(4‐hexyloxyphenyl)pyridin‐4(1H)‐one with 4‐cyano­benzoic acid

The two components of the title heterodimer, C₁₇H₂₁NO₂·C₈H₅NO₂, are linked end‐to‐end via O—H⋯O(=C) and C—H⋯O(=C) hydrogen‐bond inter­actions. Additional lateral C—H⋯O inter­actions link the dimers in a side‐by‐side fashion to produce wide infinite mol­ecular ribbons. Adjacent ribbons are inter­connected viaπ–π stacking and C—H⋯π(arene) inter­actions. This structure represents the first evidence of robust hydrogen‐bond formation between the moieties of pyridin‐4(1H)‐one and benzoic acid.     

Chains of edge‐fused hydrogen‐bonded R33(22) rings in 5,3′‐dihydr­oxy‐3,6,7,4′,5′‐penta­methoxy­flavone

The title compound [systematic name: 5‐hydroxy‐2‐(3‐hydroxy‐4,5‐dimethoxy­phenyl)‐3,6,7‐trimethoxy‐4H‐chromen‐4‐one], C₂₀H₂₀O₉, was isolated from the seeds of Cleom viscosa Linn. Two independent mol­ecules (A and B) are present in the asymmetric unit with almost similar conformations. The dihedral angles between the fused chromene ring system and the benzene ring bonded to it in mol­ecules A and B are 4.2 (1) and 12.7 (1)°, respectively. The hydroxy O atoms are involved in intra­molecular hydrogen bonding. The mol­ecules are linked by C—H⋯O and O—H⋯O inter­actions into chains of edge‐fused R₃³(22) rings. Aromatic π–π and weak C—H⋯π(arene) inter­actions are also observed.     

Tri­carbonyl(η6‐chloro­benzene)­chromium

The title compound, [Cr(C₆H₅Cl)(CO)₃], is the first group 6 tri­carbonyl ­η⁶‐monohaloarene compound to be structurally characterized. It adopts a classic piano‐stool structure, with the Cr(CO)₃ tripod assuming a syn‐eclipsed conformation relative to the arene ring (ϕ = 2.0°). The extended structure is dominated by intermolecular π⃛H interactions (H⃛ring centroid = 2.94 Å) and non‐classical hydrogen bonds between carbonyl and arene moieties (O⃛H = 2.50–2.58 Å).     

Unusual conformations of 1,3‐dialk­oxy­thia­calix[4]arenes in the solid state

The structures of three syn‐1,3‐dialkoxy­thia­calix[4]arenes with unusual conformations in the solid state are reported. The pinched cone conformation of syn‐2²,4²‐dihydroxy‐1²,3²‐bis­(prop‐2‐enyl­oxy)thia­calix[4]arene, C₃₀H₂₄O₄S₄, (3a), is stabilized by two intra­molecular hydrogen bonds, remarkably formed from both OH groups to the same ether O atom. In syn‐2²,4²‐dihydroxy‐1⁵,2⁵,3⁵,4⁵‐tetra­nitro‐1²,3²‐bis­(prop‐2‐enyl­oxy)thia­calix[4]arene acetone disolvate, C₃₀H₂₀N₄O₁₂S₄·2C₃H₆O, (3b1), the mol­ecule is found in the 1,3‐alternate conformation. The crystallographic C2 symmetry is due to a twofold rotation axis running through the centre of the calixarene ring. The hydroxy groups cannot form intra­molecular hydrogen bonds as in (3a) and both are bonded to an acetone solvent mol­ecule. The mol­ecule of the pseudo‐polymorph of (3b1) in which the same compound crystallized without any solvent, viz. (3b2), is located on a crystallographic mirror plane. Only one of the two hydroxy groups forms a hydrogen bond, and this is with a nitro group of a neighbouring mol­ecule as acceptor. Mol­ecular mechanics calculations for syn‐1,3‐diethers suggest a preference of the 1,3‐alternate over the usual cone conformation for thia­calix[4]arene versus calix[4]arene and for para‐nitro versus para‐H derivatives.     

2‐Iodo‐N‐(3‐nitrobenzyl)aniline and 3‐iodo‐N‐(3‐nitrobenzyl)aniline exhibit entirely different patterns of supramolecular aggregation

In 2‐iodo‐N‐(3‐nitro­benzyl)­aniline, C₁₃H₁₁IN₂O₂, the mol­ecules are linked into a three‐dimensional structure by a combination of C—H?O hydrogen bonds, iodo–nitro interactions and aromatic π–π‐stacking interactions, but N—H?O and C—H?π(arene) hydrogen bonds are absent. In the isomeric 3‐iodo‐N‐(3‐nitro­benzyl)­aniline, a two‐dimensional array is generated by a combination of N—H?O, C—H?O and C—H?π(arene) hydrogen bonds, but iodo–nitro interactions and aromatic π–π‐stacking interactions are both absent.     

2‐Nitrophenyl 4‐nitrophenyl disulfide

The structure of the title compound, C₁₂H₈N₂O₄S₂, contains no direction‐specific intermolecular interactions, i.e. no C—H?O hydrogen bonds, no aromatic π–π‐stacking interactions and no C—H?π(arene) interactions. This behaviour is compared with the three known symmetrical isomers of bis­(nitro­phenyl) di­sulfide, having the nitro groups on the two 2‐, 3‐ or 4‐positions, all of which exhibit direction‐specific supramolecular aggregation.     

5,11,17,23‐Tetra‐tert‐butyl‐25,26,27,28‐tetrakis(2‐cyano­benzyl­oxy)‐2,8,14,20‐tetra­thia­calix­[4]­arene–di­chloro­methane (1/2)

A new p‐tert‐butyl­thia­calix­[4]­arene derivative, C₇₂H₆₈N₄O₄S₄·2CH₂Cl₂, has been synthesized and is comprised of one tetra‐p‐tert‐butyltetrakis(2‐cyano­benzyl­oxy)­tetra­thia­calix­[4]arene and two di­chloro­methane mol­ecules. The calix­[4]­arene mol­ecule is centrosymmetric and adopts an unusual 1,2‐alternate conformation viaπ–π interactions between adjacent cyano­phenyl rings on the lower rim of the parent thia­calix­[4]­arene system.     

Racemic and chiral 1‐[N‐(chloro­acetyl)carbamoylamino]‐2,3‐dihydro‐1H‐inden‐2‐yl chloroacetate

In the racemic crystals of (1S,2R)‐ or (1R,2S)‐1‐[N‐(chloro­acetyl)­carbamoyl­amino]‐2,3‐di­hydro‐1H‐inden‐2‐yl chloro­acetate, C₁₄H₁₄Cl₂N₂O₄, (I), the enantiomeric mol­ecules form a dimeric structure via the N—H?O cyclic hydrogen bond of the carbamoyl moieties. In the chiral crystals of (—)‐(1S,2R)‐1‐[N‐(chloro­acetyl)­carbamoyl­amino]‐2,3‐di­hydro‐1H‐inden‐2‐yl chloro­acetate, C₁₄H₁₄Cl₂N₂O₄, (II), the N—­H?O intermolecular hydrogen bond forms a zigzag chain around the twofold screw axis. The melting points and calculated densities of (I) and (II) are 446 and 396 K, and 1.481 and 1.445 Mg m^?3, respectively.     

7‐Iodo‐8‐aza‐7‐deaza‐2′‐deoxy­adenosine and 7‐bromo‐8‐aza‐7‐deaza‐2′‐deoxyadenosine

The isomorphous structures of the title molecules, 4‐amino‐1‐(2‐deoxy‐β‐d ‐erythro‐pento­furan­osyl)‐3‐iodo‐1H‐pyrazolo‐[3,4‐d]pyrimidine, (I), C₁₀H₁₂IN₅O₃, and 4‐amino‐3‐bromo‐1‐(2‐deoxy‐β‐d ‐erythro‐pento­furan­osyl)‐1H‐pyrazolo[3,4‐d]­pyrimidine, (II), C₁₀H₁₂BrN₅O₃, have been determined. The sugar puckering of both compounds is C1′‐endo (^1′E). The N‐­glycosidic bond torsion angle χ¹ is in the high‐anti range [?73.2 (4)° for (I) and ?74.1 (4)° for (II)] and the crystal structure is stabilized by hydrogen bonds.     

4,4′‐Bis(4‐iodo­phenyl­amino­methyl)­azoxy­benzene: hydrogen‐bonded sheets built from C—H⃛O and C—H⃛π(arene) hydrogen bonds

Borohydride reduction of N‐(4‐nitro­benzyl­idene)‐4‐iodo­aniline has yielded the title compound, 1,2‐bis­[4‐(4‐iodo­phenyl­amino­methyl)­phenyl]­diazene 1‐oxide, C₂₆H₂₂I₂N₄O. The mol­ecules lie across centres of inversion in P2₁/c, with the azoxy O atom disordered over two sites, each having an occupancy of 0.5. The mol­ecules are linked into sheets by a combination of C—H⃛O and C—H⃛π(arene) hydrogen bonds.     

(1R,2R)‐1,2‐Di­phenyl‐1,2‐bis(8‐quinoline­sulfonyl­amino)ethyl­enedi­amine–acetone (1/1)

The crystal structure of the new chiral complex (1R,2R)‐1,2‐di­phenyl‐1,2‐bis(8‐quinoline­sulfonyl­amino)‐ ethyl­enedi­amine–acetone (1/1), C₃₂H₂₆N₄O₄S₂^.C₃H₆O, is reported. The conformation of the C₃₂H₂₆N₄O₄S₂ (BQSDA) mol­ecule is determined by a bifurcated N—H?N hydrogen‐bond system. The acetone of solvation is linked to the BQSDA mol­ecule by an N—H?O hydrogen bond.     

Cone and 1,3‐alternate conformers of 1,3‐bis­(ethoxy­carbonyl­methoxy)‐2,4‐di­hydroxy­calix­[4]­arene and 1,2,3,4‐tetrakis­(ethoxy­carbonyl­methoxy)­calix­[4]­arene

The two title ethoxy­carbonyl­methoxy derivatives of calix­[4]­arene, namely diethyl 2,4‐di­hydroxy­calix­[4]­arene‐1,3‐diyldi(oxy­ace­tate), C₃₆H₃₆O₈, (I), and tetraethyl ­calix­[4]­arene‐1,2,3,4‐tetra­yltetra­(oxy­acetate), C₄₄H₄₈O₁₂, (II), form two different conformations, viz. a cone in (I), where intramol­ecular hydrogen bonds are formed through OH groups in a partially substituted calix­[4]­arene, and a 1,3‐alternate form of a completely substituted calix­[4]­arene in (II). A unique three‐dimensional array of mol­ecules exists in (II), with the channels extended along the entire crystal.     

2(S)‐Amino‐3‐[1H‐imidazol‐4(5)‐yl]­propyl cyclo­hexylmethyl ether di­hydro­chloride and 2(S)‐amino‐3‐[1H‐imidazol‐4(5)‐yl]­propyl 4‐bromo­benzyl ether di­hydro­chloride

(Cyclo­hexyl­methyl­oxy­methyl)(1H‐imidazol‐4‐io­methyl)‐(S)‐ammonium dichloride, C₁₃H₂₅N₃O⁺·2Cl^?, and (4‐bromo­benzyl)(1H‐imidazol‐4‐io­methyl)‐(S)‐ammonium dichloride, C₁₃H₁₈BrN₃O⁺·2Cl^?, are model compounds with different biological activities for evaluation of the hist­amine H3‐receptor activation mechanism. Both title compounds occur in almost similar extended conformations.     

A novel bridged asymmetric binuclear manganese(II) complex with DTPB [DTPB is 1,1,4,7,7‐pentakis(1H‐benz­imidazol‐2‐yl­methyl)‐1,4,7‐tri­aza­heptane]

The crystal structure of the title compound, tetra­chloro­[μ‐1,1,4,7,7‐pentakis(1H‐benzimidazol‐2‐yl­methyl)‐1,4,7‐tri­azaheptane]­dimanganese(II) methanol pentasolvate tetrahydrate, [Mn₂Cl₄(C₄₄H₄₃N₁₃)]·5CH₄O·4H₂O, contains an ­asymmetric dinuclear Mn^II–DTPB [DTPB is 1,1,4,7,7‐pentakis(1H‐benzimidazol‐2‐yl­methyl)‐1,4,7‐tri­aza­heptane] complex with an intra‐ligand bridging group (–NCH₂CH₂N–), as well as several solvate mol­ecules (methanol and water). Both Mn^II cations have similar distorted octahedral coordination geometries. One Mn^II cation is coordinated by a Cl⁻ anion and five N atoms from the ligand, and the other is coordinated by three Cl⁻ anions and three N atoms of the same ligand. The Mn⋯Mn distance is 7.94 Å. A Cl⋯H—O⋯H—O⋯H—N hydrogen‐bond chain is also observed, connecting the two parts of the complex.     

catena‐Poly­[[tri‐n‐butyl­tin]‐μ‐N‐(1‐naphthyl)­maleamato]

The crystal structure of catena‐poly­[[tri‐n‐butyl­tin]‐μ‐3‐(1‐naph­thyl­amino­carbonyl)­acrylato‐κ²O¹:O³], [Sn(C₄H₉)₃(C₁₄H₁₀NO₃)]_n, is composed of polymeric chains wherein the metal center exhibits a distorted trigonal‐bipyramidal geometry, with three n‐butyl groups defining the trigonal plane [mean Sn—C 2.133 (7) Å] and the axial positions being occupied by the carboxyl­ate O atoms of two different N‐(1‐naphthyl)­maleamate ligands with inequivalent Sn—O distances [2.167 (4) and 2.457 (4) Å]. The N‐(1‐naphthyl)­maleamate fragment forms an essentially planar seven‐membered ring involving an intramolecular N—H?O hydrogen bond.     

(Z)‐3‐(1H‐Indol‐3‐yl)‐2‐(3‐thienyl)­acrylo­nitrile and (Z)‐3‐[1‐(4‐tert‐butyl­benzyl)‐1H‐indol‐3‐yl]‐2‐(3‐thienyl)­acrylo­nitrile

(Z)‐3‐(1H‐Indol‐3‐yl)‐2‐(3‐thienyl)­acrylo­nitrile, C₁₅H₁₀N₂S, (I), and (Z)‐3‐[1‐(4‐tert‐butyl­benzyl)‐1H‐indol‐3‐yl]‐2‐(3‐thienyl)­acrylo­nitrile, C₂₆H₂₄N₂S, (II), were prepared by base‐catalyzed reactions of the corresponding indole‐3‐carbox­aldehyde with thio­phene‐3‐aceto­nitrile. ¹H/¹³C NMR spectral data and X‐ray crystal structures of compounds (I) and (II) are presented. The olefinic bond connecting the indole and thio­phene moieties has Z geometry in both cases, and the mol­ecules crystallize in space groups P2₁/c and C2/c for (I) and (II), respectively. Slight thienyl ring‐flip disorder (ca 5.6%) was observed and modeled for (I).     

Precursor of a β‐lactamase inhibitor: allyl (4S,8S,9R)‐10‐[(E)‐ethyl­idene]‐4‐methoxy‐11‐oxo‐1‐aza­tri­cyclo­[7.2.0.03,8]­undec‐2‐ene‐2‐carboxyl­ate

The molecular structure of the title tricyclic compound, C₁₇H₂₁NO₄, which is the immediate precursor of a potent synthetic inhibitor {Lek157: sodium (8S,9R)‐10‐[(E)‐ethyl­idene]‐4‐methoxy‐11‐oxo‐1‐aza­tri­cyclo­[7.2.0.0^3,8]­undec‐2‐ene‐2‐carboxyl­ate} with remarkable potency, provides experimental evidence for the previously modelled relative position of the fused cyclo­hexyl ring and the carbonyl group of the β‐lactam ring, which takes part in the formation of the initial tetrahedral acyl–enzyme complex. In this hydro­phobic mol­ecule, the overall geometry is influenced by C—H?O intramolecular hydrogen bonds [3.046 (4) and 3.538 (6) Å, with corresponding normalized H?O distances of 2.30 and 2.46 Å], whereas the mol­ecules are interconnected through intermolecular C—H?O hydrogen bonds [3.335 (4)–3.575 (5) Å].     

25,27‐(6‐Tosyl‐3,9‐dioxa‐6‐aza­un­decane‐1,11‐diyldioxy)‐26,28‐(3,6,9‐trioxaun­decane‐1,11‐diyldioxy)­calix­[4]­arene

A new calix­[4]‐­crowned aza­crown ether, C₅₁H₅₉NO₁₁S, consisting of four phenyl rings in a 1,3‐alternate conformation was synthesized from the reaction of 25,27‐bis(5‐chloro‐3‐oxa­pentyl­oxy)­calix­[4]­crown‐5 and p‐toluene­sulfon­amide in the presence of Cs₂CO₃. A crown‐5 loop was attached on the two facing lower rims of the calix­[4]­arene and the N‐tosyl aza­crown group was attached on the other set of lower rims of the calix­[4]­arene backbone. This mol­ecule seems to offer an inside cavity for the formation of a host–guest complex.     

Tetrameric triphenylsilanol, (Ph3SiOH)4, and the adduct (Ph3SiOH)2–di­methyl sulfoxide,both at 120 K,and the adduct (Ph3SiOH)4–1,4‐dioxan at 150 K: interplay of O—H⋯O and C—H⋯π(arene) interactions

The structure of tetrameric tri­phenyl­silanol, C₁₈H₁₆OSi, (I), has been re‐investigated at 120 (2) K. The hydroxyl H atoms were readily located and one of the arene rings is disordered over two closely positioned sets of sites. The mol­ecules are linked into cyclic tetramers, having approximate (S₄) symmetry, via O—H?O hydrogen bonds [H?O 1.81–1.85 Å, O?O 2.634 (3)–2.693 (3) Å and O—H?O 156–166°]. At ambient temperature, there are indications of multiple disorder of the phenyl‐ring sites. In bis­(tri­phenyl­silanol) di­methyl sulfoxide solvate, 2C₁₈H₁₆OSi·C₂H₆OS, (II), the di­methyl sulfoxide component is disordered across a twofold rotation axis in C2/c, and the molecular components are linked by a single O—H?O hydrogen bond [H?O 1.85 Å, O?O 2.732 (2) Å and O—H?O 172°] into three‐mol­ecule aggregates, which are themselves linked into a single three‐dimensional framework by two C—H?π(arene) interactions. In tetrakis­(tri­phenyl­silanol) 1,4‐dioxan solvate, 4C₁₈H₁₆OSi·C₄H₈O₂, (III), the 1,4‐dioxan component lies across an inversion centre in space group P and centrosymmetric five‐mol­ecule aggregates are linked by paired C—H?π(arene) interactions to form molecular ladders.     

Polymeric μ‐cyano‐di­cyano­nickelate(II)‐μ‐cyano‐trans‐bis­[N‐(2‐hydroxyethyl)ethyl­enedi­amine]­cadmium(II)

The title compound, catena‐poly­[[μ‐cyano‐1:2κ²C:N‐di­cyano‐1κ²C‐trans‐bis­[N‐(2‐hydroxy­ethyl)­ethane‐1,2‐di­amine‐2κ²N,N′]­cadmium(II)­nickel(II)]‐μ‐cyano‐1:2′κ²C:N], [CdNi(CN)₄(C₄H₁₂N₂O)₂], consists of alternating square‐planar Ni(CN)₄ fragments, formally dianionic, and Cd(hydet‐en)₂ moieties [hydet‐en is N‐(2‐hydroxy­ethyl)­ethyl­ene­di­amine], with the two bridging cyanide ligands in a mutually trans disposition at the Ni atom and cis at the Cd atom. The resulting one‐dimensional zigzag chain structure has the Ni atom on an inversion center, while the distorted octahedron centered on the Cd atom lies on a twofold axis. The polymer chains are connected into undulating sheets by weak interchain N—H⋯N, N—H⋯O and O—H⋯N hydrogen bonds, which are also present between successive sheets.