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1.
Halogen-hydride interactions between Z-X (Z = CN, NC and X = F, Cl, Br) as halogen donor and H-Mg-Y (Y = H, F, Cl, Br, CH(3)) as electron donor have been investigated through the use of Becke three-parameter hybrid exchange with Lee-Yang-Parr correlation (B3LYP), second-order M?ller-Plesset perturbation theory (MP2), and coupled-cluster single and double excitation (with triple excitations) [CCSD(T)] approaches. Geometry changes during the halogen-hydride interaction are accompanied by a mutual polarization of both partners with some charge transfer occurring from the electron donor subunit. Interaction energies computed at MP2 level vary from -1.23 to -2.99 kJ/mol for Z-F···H-Mg-Y complexes, indicating that the fluorine interactions are relatively very weak but not negligible. Instead, for chlorine- and bromine-containing complexes the interaction energies span from -5.78 to a maximum of -26.42 kJ/mol, which intimate that the interactions are comparable to conventional hydrogen bonding. Moreover, the calculated interaction energy was found to increase in magnitude with increasing positive electrostatic potential on the extension of Z-X bond. Analysis of geometric, vibrational frequency shift and the interaction energies indicates that, depending on the halogen, CN-X···H interactions are about 1.3-2.0 times stronger than NC-X···H interactions in which the halogen bonds to carbon. We also identified a clear dependence of the halogen-hydride bond strength on the electron-donating or -withdrawing effect of the substituent in the H-Mg-Y subunits. Furthermore, the electronic and structural properties of the resulting complexes have been unveiled by means of the atoms in molecules (AIM) and natural bond orbital (NBO) analyses. Finally, several correlative relationships between interaction energies and various properties such as binding distance, frequency shift, molecular electrostatic potential, and intermolecular density at bond critical point have been checked for all studied systems.  相似文献   

2.
A series of ring-shaped molecular complexes formed by H(3)N, HF and XY (X = Cl, Br and Y = F, Cl, Br) have been investigated at the MP2/aug-cc-pVTZ level of theory. Their optimized geometry, stretching mode, and interaction energy have been obtained. We found that each complex possesses two red-shifted hydrogen bonds and one red-shifted halogen bond, and the two hydrogen bonds exhibit strong cooperative effects on the halogen bond. The cooperativity among the NH(3)···FH, FH···XY and H(3)N···XY interactions leads to the formations of these complexes. The AIM analysis has been performed at the CCSD(T)/aug-cc-pVQZ level of theory to examine the topological characteristics at the bond critical point and at the ring critical point, confirming the coexistence of the two hydrogen bonds and one halogen bond for each complex. The NBO analysis carried out at the B3LYP/aug-cc-pVTZ level of theory demonstrates the effects of hyperconjugation, hybridization, and polarization coming into play during the hydrogen and halogen bonding formations processes, based on which a clockwise loop of charge transfer was discovered. The molecular electrostatic potential has been employed to explore the formation mechanisms of these molecular complexes.  相似文献   

3.
In this study, 16 gas phase complexes of the pairs of XCHZ and CO(2) (X = F, Cl, Br; Z = O, S) have been identified. Interaction energies calculated at the CCSD(T)/aug-cc-pVTZ//MP2/aug-cc-pVTZ level including both BSSE and ZPE corrections range from -5.6 to -10.5 kJ mol(-1) for XCHOCO(2) and from -5.7 to -9.1 kJ mol(-1) for XCHS···CO(2). Substitution of one H atom by one halogen in formaldehyde and thioformaldehyde reduces the interaction energy of XCHZ···CO(2), while a CH(3) substitution increases the interaction energy of both CH(3)CHO···CO(2) and CH(3)CHS···CO(2). NBO and AIM analyses also point out that the strength of Lewis acid-base interactions decreases going from >C1=S3···C6 to >C1=O3C6 and to >C1-X4···C6. This result suggests the higher capacity of solubility of thiocarbonyl compounds in scCO(2), providing an enormous potential application for designing CO(2)-philic materials based on the >C=S functional group in competition with >C=O. The Lewis acid-base interaction of the types >C=S···C, >C-Cl···C and >C-Br···C is demonstrated for the first time. The contribution of the hydrogen bonding interaction to the total interaction energy is larger for XCHS···CO(2) than for XCHO···CO(2). Upon complexation, a contraction of the C1-H2 bond length and a blue shift of its stretching frequency have been observed, as compared to the isolated monomer, indicating the existence of a blue-shifting hydrogen bond in all complexes examined. Calculated results also lend further support for the viewpoint that when acting as proton donor, a C-H bond having a weaker polarization will induce a stronger distance contraction and frequency blue shift upon complexation, and vice versa.  相似文献   

4.
For many years halothane and enflurane have been used clinically as volatile anaesthetics, however, their mechanism of action is still not fully understood. Recently, it has been suggested that they can act by a direct bonding to neuroreceptors containing the aromatic groups. In this work, the halothane?benzene and enflurane?benzene complexes were studied by the ab initio MP2 and CCSD(T) methods. All possible structures of the complexes were calculated by means of the counterpoise CP-corrected gradient optimization technique. It has been found that among these species, the C–H?π hydrogen bonded complexes are the most stable. The CCSD(T)/CBS calculated stabilization energies for halothane and enflurane complexes are: −10.56 and −9.72 kcal mol−1, respectively. The interaction energy is mainly dominated by the dispersion attraction. In the case of enflurane, the C–H bond shows a very small contraction (by −0.0008 Å) upon complexation. This change is accompanied by the blue-shift (20 cm−1) of the C–H stretching frequency and an increase of the infrared intensity of the corresponding mode by 7 km mol−1. Similar results were obtained for the halothane complex: a small contraction of the C–H bond; an increase of the C–H stretching frequency by 11 cm−1 (blue-shift); and an increase of the infrared intensity by 37 km mol−1. In order to explain the nature of these effects, the halothane and enflurane molecules were studied in the electric field generated by benzene atoms, and Natural Bond Orbital (NBO) analyses were performed. The molecular dipole moments of these molecules were calculated with respect to the C–H bond changes. The positive dipole moment derivative obtained for halothane is in agreement with the literature data, while, in the case of enflurane, an unusual effect is observed, the blue-shift of the C–H stretching frequency is accompanied by the positive dipole moment derivative for one C–H bond and the negative for the other C–H bond. The mechanisms responsible for contraction and strengthening of the C–H bonds are discussed.  相似文献   

5.
The complexes formed between dimethylchalcogens X(CH(3))(2) (X = S, Se, and Te) and hypohalous acids YOH (Y = F, Cl, Br, and I) have been studied at the MP2/aug'-cc-pVTZ computational level, five minima structures being located. Two of them correspond to hydrogen bonds (HB), another two to halogen bonds (XB) with the chalcogen acting as an electron donor, the last one showing a C-H···O contact. The most stable complexes of IOH and BrOH acids present halogen···chalcogen interactions with interaction energies, E(i), up to -49 kJ mol(-1). In the case of the ClOH and FOH molecules, the hydrogen bonded complexes are more stable with interaction energies between -27 and -34 kJ mol(-1). Linear correlations between the molecular electrostatic potential (MEP) stationary points at the van der Waals surface and the interaction energy have been found. The contribution of the different energy terms to the total interaction energy was analyzed by means of the DFT-SAPT theory finding that the electrostatic attractive term is dominant in the complexes with HB and XB, excepting a few cases in which the dispersion and induction terms become more important than the electrostatic one.  相似文献   

6.
The respective structures and stabilities of imidazole-imidazole, benzene-imidazole, and benzene-indole dimers have been investigated using different DFT-D functional, MP2, CCSD(T), and SAPT levels of theory with a medium basis set. Comparative analysis of binding energies and structural parameters of the dimers points to a preference for stacking contact or hydrogen bond in an imidazole-imidazole dimer. In contrast, a T-shaped configuration with H-π interaction is maximally advantageous for benzene-imidazole and benzene-indole dimers. High-level ab initio calculations at the CCSD(T)/CBS and DFT-SAPT levels show that classical hydrogen-bonded tilted imidazole-imidazole dimer is a global minimum structure and that it has high electrostatic energy. However, for benzene-imidazole and benzene-indole dimers, the global minimum (N-H···π) structure has high electrostatic energy as well as dispersion energy.  相似文献   

7.
Using FTIR and Raman spectroscopy, the formation of halogen bonded complexes of the trifluorohalomethanes CF(3)Cl, CF(3)Br and CF(3)I with ethene and propene dissolved in liquid argon has been investigated. For CF(3)Br and CF(3)I, evidence was found for the formation of C-X···π halogen bonded 1:1 complexes. At a higher ratio of CF(3)I/propene, weak absorptions due to a 2:1 complex were also observed. Using spectra recorded at different temperatures, the complexation enthalpies for the complexes were determined to be -5.3(2) kJ mol(-1) for CF(3)Br·ethene, -7.5(2) kJ mol(-1) for CF(3)I·ethene, -5.6(1) kJ mol(-1) for CF(3)Br·propene, -8.8(1) kJ mol(-1) for CF(3)I·propene and -16.5(6) kJ mol(-1) for (CF(3)I·)(2)propene. The complexation enthalpies of the hydrogen bonded counterparts, with CF(3)H as the Lewis acid, were determined to be -4.6(4) kJ mol(-1) for CF(3)H·ethene and -5.1(2) kJ mol(-1) for CF(3)H·propene. For both hydrogen bonded complexes, a blue shift, by +4.8 and +4.0 cm(-1), respectively, was observed for the C-H stretching mode. The results from the cryospectroscopic study are compared with ab initio calculations at the MP2/aug-cc-pVDZ(-PP) level.  相似文献   

8.
MP4/6-31+G* level calculations are performed to study the reductive bond-breaking reaction of the C-X bond in halomethanes, CH3X and CH2X2 where X is a fluorine atom or chlorine atom. This type of reaction involves a radical anion, after attaching an extra electron to the halomethane molecule, in which a C-X bond-breaking takes place. Products are a radical and a halogen anion. The equilibrium geometry and bond dissociation energy of the C-X bond thus found are in good agreement with previous theoretical and experimental results. The anomeric effect, electrostatic effect, and radical re-stabilization effect, are investigated to find their influences on bond length and bond dissociation energy in CH3X and CH2X2. Potential energy curves are calculated for the reductive bond-cleavage process, and trends in activation energy for various cases are discussed.  相似文献   

9.
Munusamy E  Sedlak R  Hobza P 《Chemphyschem》2011,12(17):3253-3261
The structure and stabilization energies of benzene (and methylated benzenes)···X(2) (X=F, Cl, Br, N) complexes were investigated by performing CCSD(T)/complete basis set limit and density functional theory/symmetry-adapted perturbation theory (DFT-SAPT) calculations. The global minimum of the benzene···dihalogen complexes corresponds to the T-shaped structure, whereas that of benzene···dinitrogen corresponds to the sandwich one. The different binding motifs of these complexes arise from the different quadrupole moments of dihalogens and dinitrogen. The different sign of the quadrupole moments of these diatomics is explained based on the electrostatic potential (ESP). Whereas all dihalogens, including difluorine, possess a positive σ hole, such a positive area of the ESP is completely missing in the case of dinitrogen. Moreover, benzene···X(2) (X=Br, Cl) complexes are stronger than benzene···X(2) (X=F, N) complexes. When analyzing DFT-SAPT electrostatic, dispersion, induction, and δ(Hartree-Fock) energies, we recapitulate that the former complexes are stabilized mainly by dispersion energy, followed by electrostatic energy, whereas the latter complexes are stabilized mostly by the dispersion interaction. The charge-transfer energy of benzene···dibromine complexes, and surprisingly, also of methylated benzenes···dibromine complexes is only moderate, and thus, not responsible for their stabilization. Benzene···dichlorine and benzene···dibromine complexes can thus be characterized merely as complexes with a halogen bond rather than as charge-transfer complexes.  相似文献   

10.
The triatomic radicals NCO and NCS are of interest in atmospheric chemistry,and both the ends of these radicals can potentially serve as electron donors during the formation of σ-type hydrogen/halogen bonds with electron acceptors XY(X = H,Cl;Y = F,Cl,and Br).The geometries of the weakly bonded systems NCO/NCS···XY were determined at the MP2/aug-cc-pVDZ level of calculation.The results obtained indicate that the geometries in which the hydrogen/halogen atom is bonded at the N atom are more stable than those where it is bonded at the O/S atom,and that it is the molecular electrostatic potential(MEP)-not the electronegativity-that determines the stability of the hydrogen/halogen bond.For the same electron donor(N or O/S) in the triatomic radical and the same X atom in XY,the bond strength decreases in the order Y = F > Cl > Br.In the hydrogen/halogen bond formation process for all of the complexes studied in this work,transfer of spin electron density from the electron donor to the electron acceptor is negligible,but spin density rearranges within the triatomic radicals,being transferred to the terminal atom not interacting with XY.  相似文献   

11.
The C?H???N hydrogen‐bonded complexes of several fluorophenyacetylenes with ammonia and methylamine were characterized by a redshift in the acetylenic C?H stretching vibration of the phenylacetylene moiety. These redshifts were linearly correlated with the stabilization energies calculated at the CCSD(T)/CBS//MP2‐aug‐cc‐pVDZ level. Analysis of various components of the interaction energy indicated that the observed redshifts were weakly correlated with the electrostatic component. The weaker linear correlation between the frequency shifts and the electrostatic component between two data sets can perhaps be attributed to the marginal differences in the Stark tuning rate and zero‐field shifts. The induction and exchange‐repulsion components were linearly correlated. However, the dispersion component depends on the nature of the hydrogen‐bond acceptor and shows a quantum jump when the hydrogen‐bond acceptor is changed from ammonia to methylamine. The observed linear correlation between the redshifts in the C?H stretching frequencies and the total stabilization energies is due to mutual cancellation of deviations from linearity between various components.  相似文献   

12.
The origin of the X-Hal bond-length change in the halogen bond of the X-Hal...Y type has been investigated at the MP2(full)/6-311++G(d,p) level of theory using a natural bond orbital analysis, atoms in molecules procedure, and electrostatic potential fitting methods. Our results have clearly shown that various theories explaining the nature of the hydrogen bond cannot be applied to explain the origin of the X-Hal bond-length change in the halogen bond. We provide a new explanation for this change. The elongation of the X-Hal bond length is caused by the electron-density transfer to the X-Hal sigma* antibonding orbital. For the blue-shifting halogen bond, the electron-density transfer to the X-Hal sigma* antibonding orbital is only of minor importance; it is the electrostatic attractive interaction that causes the X-Hal bond contraction.  相似文献   

13.
Inspired by the recent interest of halogen bonding (XB) in the solid state, we detail a comprehensive benchmark study of planewave DFT geometry and interaction energy of lone-pair (LP) type and aromatic (AR) type halogen bonded complexes, using PAW and USPP pseudopotentials. For LP-type XB dimers, PBE-PAW generally agrees with PBE/aug-cc-pVQZ(−pp) geometries but significantly overbinds compared to CCSD(T)/aug-cc-pVQZ(-pp). Grimme's D3 dispersion corrections to PBE-PAW gives better agreement to the MP2/cc-pVTZ(-pp) results for AR-type dimers. For interaction energies, PBE-PAW may overbind or underbind for weaker XBs but clearly overbinds for stronger XBs. D3 dispersion corrections exacerbate the overbinding problem for LP-type complexes but significantly improves agreement for AR-type complexes compared to CCSD(T)/CBS. Finally, for periodic XB crystals, planewave PBE methods slightly underestimate the XB lengths by 0.03 to 0.05 Å. © 2019 Wiley Periodicals, Inc.  相似文献   

14.
A scheme that explicitly contains electrostatic, polarization, and dispersion interactions to rapidly simulate anion-π interactions is proposed and assessed by structural and energetic comparison with those produced via the complete basis set limit of the coupled-cluster singles and doubles plus perturbative triples [CCSD (T)/CBS] method for a set of X-…C6H6-nRn complexes where X-=F-, Cl-, Br- and R=CN, F. We use the chemical bonds C≡N, C―F, and C―H of the substituted benzenes as bond dipoles. The electrostatic interactions are estimated by calculating the interactions between the charge of the anion and the bond dipole moments of the substituted benzene. The polarization interactions are described according to the variation of the magnitudes of the bond dipole moments with the local environment. The parameters needed are produced by fitting the high-quality CCSD (T)/CBS potential energy curves. Calculation results show that our scheme produces equilibrium intermolecular distances with a root-mean-square deviation of 0.004 nm and interaction energies with a root-mean-square deviation of 2.81 kJ·mol-1 compared with the CCSD (T)/CBS results. The calculation results also show that our scheme reproduces the CCSD (T)/CBS potential energy curves well. These comparisons indicate the scheme proposed here is accurate and efficient, suggesting it may be a helpful tool to design and simulate relevant molecular materials.  相似文献   

15.
运用量子化学密度泛函B3LYP方法, 采用6-311++G(d,p)及aug-cc-pVDZ基组, 通过CP校正的几何梯度优化对(CH2)2O和(CH2)2S与双卤分子XY (XY=Cl2, Br2, ClF, BrF, BrCl)形成的卤键复合物的几何构型、振动频率和相互作用能等进行了研究. 利用电子密度拓扑分析理论方法对卤键复合物的拓扑性质进行了分析研究, 探讨了该类分子间卤键的作用本质. 结果表明, (CH2)2O和(CH2)2S与双卤分子间的卤键介于共价键与离子键之间, 偏于静电作用成分为主. 形成卤键后, 双卤分子的键长增加, 振动频率减小, 原子积分性质发生改变. 卤键键长的变化、键能的强弱、键鞍点处的电子密度值与双卤分子的电负性有关.  相似文献   

16.
Structure and properties of complexes (energies and charge transfer) of complexes BrF‐HX (X = F, Cl, Br, I) have been investigated at the MP2/aug‐cc‐pVDZ (aug‐cc‐pVDZ‐pp basis sets for I) level. Two types of geometries (hydrogen‐bonded and halogen‐bonded) are observed. The calculated interaction energies show that the halogen bonded structures are more stable than the corresponding hydrogen‐bonded structures. To study the nature of the intermolecular interactions, symmetry‐adapted perturbation theory (SAPT) energy decomposition analysis reveals that the BrF‐HX complexes are dominantly electrostatic in nature. © 2011 Wiley Periodicals, Inc. Int J Quantum Chem, 2011  相似文献   

17.
The halogen bonded complexes between six carbonyl bases and molecular chlorine are investigated theoretically. The interaction energies calculated at the CCSD(T)/aug‐cc‐pVTZ level range between ?1.61 and ?3.50 kcal mol?1. These energies are related to the ionization potential, proton affinity, and also to the most negative values (Vs,min) on the electrostatic potential surface of the carbonyl bases. A symmetry adapted perturbation theory decomposition of the energies has been performed. The interaction results in an elongation of the Cl? Cl bond and a contraction of the CF and CH bonds accompanied by a blue shift of the ν(CH) vibrations. The properties of the Cl2 molecules are discussed as a function of the σ*(Cl? Cl) occupation, the hybridization, and the occupation of the Rydberg orbitals of the two chlorine atoms. Our calculations predict a large enhancement of the infrared and Raman intensities of the ν(Cl? Cl) vibration on going from isolated to complexed Cl2. © 2015 Wiley Periodicals, Inc.  相似文献   

18.
Ab initio and density functional calculations were employed to investigate the bonding patterns in theadenine-5-bromouracil (AT+) complexes. It is shown that the Br atom in 5-bromouracil (T+) is involved in bonding both with the hydrogen atom of the amino group of adenine (A) and with N7(A) (or N1(A)). With this motif, the Br atom interacts with a nucleophile (H) in a "head-on" fashion and an electrophile(N) in a "side-on" fashion, forming both hydrogen and halogen bonds. Electrostatic attraction between the Br atom in T+ and N7 (or N1) of adenine was found via the electrostatic potential analysis. The existence of the Br···N interactions in the pairs was further conˉrmed by means of Bader's atoms in molecules theory. A bond critical point is identiˉed for the halogen bonds and the topological parameters at the bond critical point indicate the typical closed-shell interactions in the pairs. Natural bond orbital analysis suggests that the charge transfer from the lone pair of the nitrogen atom of adenine is mainly directed to the C-Br antibonding orbital. Finally, halogen bonds in the T+AT+A tetrads were also explored.  相似文献   

19.
Ab initio calculations have been performed on a series of complexes formed between halogen-containing molecules and ammonia to gain a deeper insight into the nature of halogen bonding. It appears that the dihalogen molecules form the strongest halogen-bonded complexes with ammonia, followed by HOX; the charge-transfer-type contribution has been demonstrated to dominate the halogen bonding in these complexes. For the complexes involving carbon-bound halogen molecules, our calculations clearly indicate that electrostatic interactions are mainly responsible for their binding energies. Whereas the halogen-bond strength is significantly enhanced by progressive fluorine substitution, the substitution of a hydrogen atom by a methyl group in the CH(3)X...NH(3) complex weakened the halogen bonding. Moreover, remote substituent effects have also been noted in the complexes of halobenzenes with different para substituents. The influence of the hybridization state of the carbon atom bonded to the halogen atom has also been examined and the results reveal that halogen-bond strengths decrease in the order HC triple bond CX > H(2)C=CHX approximately O=CHX approximately C(6)H(5)X > CH(3)X. In addition, several excellent linear correlations have been established between the interaction energies and both the amount of charge transfer and the electrostatic potentials corresponding to an electron density of 0.002 au along the R-X axis; these correlations provide good models with which to evaluate the electron-accepting abilities of the covalently bonded halogen atoms. Finally, some positively charged halogen-bonded systems have been investigated and the effect of the charge has been discussed.  相似文献   

20.
MP2/aug'-cc-pVTZ calculations have been performed to investigate the halogen-bonded complexes FCl:PCX, for X = NC, CN, F, H, CCH, CCF, CH(3), Li, and Na. Although stable complexes with a F-Cl···P halogen bond exist that form through the lone pair at P (configuration I), except for FCl:PCCN, the more stable complexes are those in which FCl interacts with the C≡P triple bond through a perturbed π system (configuration II). In complexes I, the nature of the halogen bond changes from traditional to chlorine-shared and the interaction energies increase, as the electron-donating ability of X increases. The anionic complex FCl:PC(-) has a chlorine-transferred halogen bond. SAPT analyses indicate that configuration I complexes with traditional halogen bonds are stabilized primarily by the dispersion interaction. The electrostatic interaction is the most important for configuration I complexes with chlorine-shared halogen bonds and for configuration II complexes except for FCl:PCNa for which the induction term is most important. The F-Cl stretching frequency is red-shifted upon complexation. EOM-CCSD/(qzp,qz2p) spin-spin coupling constants have been obtained for all FCl:PCX complexes with configuration I. (1)J(F-Cl) decreases upon complexation. (2X)J(F-P) values are quadratically dependent upon the F-P distance and are very sensitive to halogen-bond type. (1X)J(Cl-P) tends to increase as the Cl-P distance decreases but then decreases dramatically in the chlorine-transferred complex FCl:PC(-) as the Cl-P interaction approaches that of a covalent Cl-P bond. Values of (1)J(F-Cl) for configuration II are reduced relative to configuration I, reflecting the longer F-Cl distances in II compared to those of the neutral complexes of I. Although the F-P and Cl-P distances in configuration II complexes are shorter than these distances in the corresponding configuration I complexes, (2X)J(F-P) and (1X)J(Cl-P) values are significantly reduced, indicating that coupling through the perturbed C-P π bond is less efficient. The nature of F-P coupling for configuration II is also significantly different, as evidenced by the relative importance of PSO, FC, and SD components.  相似文献   

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