4‐Trifluoromethyl‐Substituted Coumarins with Large Stokes Shifts: Synthesis,Bioconjugates, and Their Use in Super‐Resolution Fluorescence Microscopy

Bright and photostable fluorescent dyes with large Stokes shifts are widely used as sensors, molecular probes, and light‐emitting markers in chemistry, life sciences, and optical microscopy. In this study, new 7‐dialkylamino‐4‐trifluoromethylcoumarins have been designed for use in bioconjugation reactions and optical microscopy. Their synthesis was based on the Stille reaction of 3‐chloro‐4‐trifluoromethylcoumarins and available (hetero)aryl‐ or (hetero)arylethenyltin derivatives. Alternatively, the acylation of 2‐trifluoroacetyl‐5‐dialkylaminophenols with available (hetero)aryl‐ or (hetero)arylethenylacetic acids followed by intramolecular condensation afforded coumarins with 3‐(hetero)aryl or 3‐[2‐(hetero)aryl]ethenyl groups. Hydrophilic properties were provided by the introduction of a sulfonic acid residue or by phosphorylation of a primary hydroxy group attached at C‐4 of the 2,2,4‐trimethyl‐1,2‐dihydroquinoline fragment fused to the coumarin fluorophore. For use in immunolabeling procedures, the dyes were decorated with an (activated) carboxy group. The positions of the absorption and emission maxima vary in the ranges 413–480 and 527–668 nm, respectively. The phosphorylated dye, 9 ,CH?CH‐2‐py,H, with the 1‐(3‐carboxypropyl)‐4‐hydroxymethyl‐2,2‐dimethyl‐1,2‐dihydroquinoline fragment fused to the coumarin fluorophore bearing the 3‐[2‐(2‐pyridyl)ethenyl] residue (absorption and emission maxima at 472 and 623 nm, respectively) was used in super‐resolution light microscopy with stimulated emission depletion and provided an optical resolution better than 70 nm with a low background signal. As a result of their large Stokes shifts, good fluorescence quantum yields, and adequate photostabilities, phosphorylated coumarins enable two‐color imaging (using several excitation sources and a single depletion laser) to be combined with subdiffractional optical resolution.     

“Reduced” Coumarin Dyes with an O‐Phosphorylated 2,2‐Dimethyl‐4‐(hydroxymethyl)‐1,2,3,4‐tetrahydroquinoline Fragment: Synthesis,Spectra, and STED Microscopy

Large Stokes‐shift coumarin dyes with an O‐phosphorylated 4‐(hydroxymethyl)‐2,2‐dimethyl‐1,2,3,4‐tetrahydroquinoline fragment emitting in the blue, green, and red regions of the visible spectrum were synthesized. For this purpose, N‐substituted and O‐protected 1,2‐dihydro‐7‐hydroxy‐2,2,4‐trimethylquinoline was oxidized with SeO₂ to the corresponding α,β‐unsaturated aldehyde and then reduced with NaBH₄ in a “one‐pot” fashion to yield N‐substituted and 7‐O‐protected 4‐(hydroxymethyl)‐7‐hydroxy‐2,2‐dimethyl‐1,2,3,4‐tetrahydroquinoline as a common precursor to all the coumarin dyes reported here. The photophysical properties of the new dyes (“reduced coumarins”) and 1,2‐dihydroquinoline analogues (formal precursors) with a trisubstituted C=C bond were compared. The “reduced coumarins” were found to be more photoresistant and brighter than their 1,2‐dihydroquinoline counterparts. Free carboxylate analogues, as well as their antibody conjugates (obtained from N‐hydroxysuccinimidyl esters) were also prepared. All studied conjugates with secondary antibodies afforded high specificity and were suitable for fluorescence microscopy. The red‐emitting coumarin dye bearing a betaine fragment at the C‐3‐position showed excellent performance in stimulation emission depletion (STED) microscopy.     

A Facile One Pot Synthesis of New Tricyclic Coumarins from Single Synthon [1

A high yielding method for the synthesis of new tricyclic coumarins is reported herein using 8‐formyl‐7‐hydroxy‐4‐methyl coumarin as a single synthon. Different strategies were employed to synthesize tricyclic coumarins fused with isoxazole and pyran at C7‐C8 position in the coumarin skeleton. Functional group modifications during the construction of pyrazolyl coumarin has resulted in novel oxidative ipso nitration. The O‐tosylate was subjected to conditions of pressure in a sealed tube experiment, since it was not possible to replace the 7‐hydroxy group of coumarin by regular methods. All the compounds synthesized during the present investigation were characterized by IR, ¹H‐NMR, ¹³C‐NMR, ESI‐MS, and elemental analysis. The X‐ray diffraction data of some of the intermediate hydrazones are also reported herein.     

Liquid-crystalline coumarin derivatives: contribution to the tailoring of metal-free sensitizers for solar cells

Coumarins have been used in a wide range of applications, such as dye-sensitised solar cells, laser dyes and optical sensors. In order to further explore the properties of these materials, three new coumarin derivatives were obtained with different terminal arylalkyne linkages to the 6-position of the coumarin core. The synthesised materials were characterised by NMR, absorption and emission spectroscopy, and the liquid crystal properties were investigated through differential scanning calorimetry and polarised optical microscopy. In addition, dye-sensitised solar cells were assembled to evaluate the photoelectrochemical properties of the materials. Only the coumarin with a naphthyl group exhibited stable smectic A and nematic mesophases. All the coumarins were photoemissive in the range 420–461 nm. The adsorption of these dyes on TiO₂ was observed by UV–vis spectroscopy; in addition, by incident photon-to-electron conversion efficiency and I–V curves, photocurrent generation was observed.     

Keto‐benzo[h]‐Coumarin‐Based Near‐Infrared Dyes with Large Stokes Shifts for Bioimaging Applications

Fluorescence imaging is a promising tool for the visualization of biomolecules in living systems and there is great demand for new fluorescent dyes that absorb and emit in the near‐infrared (NIR) region. Herein, we constructed three new fluorescent dyes ( NBC dyes) based on keto‐benzo[h]coumarin ( k‐BC ) and benzopyrilium salts. These dyes showed large Stokes shifts (>100 nm) and NIR emission (>800 nm). The relationship between the structures and optical properties of these dyes was further investigated by using density functional theory calculations at the B3LYP/6‐3G level of theory. Fluorescence images indicated that the fabricated dyes exhibited good photostability and low cytotoxicity and, thus, have potential applications as imaging agents in living cells and animals.     

Local environments of coumarin dyes within mesostructured silica-surfactant nanocomposites

The local environments surrounding dye molecules were studied with use of coumarin dyes in a mesostructured silica-surfactant nanocomposite, which was formed in a porous alumina membrane by a surfactant-templated method and has an average pore diameter of 3.4 nm. Coumarin dyes, such as coumarin 480 (C480), coumarin 343 (C343), and propylamide coumarin 343 (PAC343), were extracted into the silica-surfactant nanocomposite and time-resolved fluorescence spectra of these dyes were examined. C480 and C343 show slow dynamic Stokes shifts and the decay curve can be fitted by a biexponential function. The decay-time constants obtained from the fitting are almost identical for C480 and C343: 0.87 and 7.5 ns for C480, and 0.86 and 7.6 ns for C343. In contrast to these two coumarin dyes, short decay-time constants (0.50 and 4.8 ns) were obtained for PAC343 in the silica-surfactant nanocomposite. These results indicate that the local environments of C480 and C343 are almost identical but different from that of PAC343. By considering the origin of the dynamic Stokes shift and the mesostructure of the silica-surfactant nanocomposite, the location and microenvironment of coumarin dyes within the silica-surfactant nanocomposite are discussed.     

Excited State Intramolecular Proton Transfer of New Diphenylethylene Derivatives Bearing Imino Group: A Combination of Experimental and Theoretical Investigation

In this paper, we described the synthesis and characterization of new diphenylethylene bearing imino group. We concentrated particularly on the investigation of the possibility of the excited state intramolecular charge transfer (ESIPT) of the new dyes experimentally and theoretically. The absorption and fluorescence spectroscopy of the dyes were determined in various solvents. The results showed that the maximal absorption wavelength of 2‐[(4′‐N,N‐dimethylamino‐diphenylethylene‐4‐ylimino)methyl]phenol ( C1 ) and 4‐[(4′‐N,N‐dimethylamino‐diphenylethylene‐4‐ylimino)methyl]phenol ( C2 ) exhibited almost independence on the solvent polarity. While as contrast, the maximal fluorescence wavelength of the dyes showed somewhat dependence on the solvent polarity. In particular, C1 displayed well‐separated dual fluorescence spectroscopy. The second fluorescence peak was characterized with an "abnormal" fluorescence emission wavelength in aprotic solvents with large Stokes shift (ca. 140 nm in THF), which was much more than normal Stokes shift (ca. 30 nm in THF). This emission spectroscopy could be assigned to ESIPT emission. On the other hand, the ESIPT fluorescence of C1 was much reduced or lost in the protic solvents. While, only normal fluorescence emission was detected in various solvents. Although the absorption maxima of C1 exhibited about 10 nm red‐shift with respect to those of C2 , the normal fluorescence maxima of C1 and C2 were almost identical in various solvents. These results suggested that C1 could undergo ESIPT, but C2 was not able to proceed ESIPT. The molecular geometry optimization of phototautomers in the ground electronic state (S₀) was carried out with HF method (Hartree‐Fock) and at DFT level (Density Functional Theory) using B3LYP both, while the CIS was employed to optimize the geometries of the first singlet excited state (S₁) of the phototautomers of C1 and C2 respectively. The properties of the ground state and the excited state of the phototautomers of C1 and C2 , including the geometrical parameter, the energy, the frontier orbits, the Mulliken charge and the dipole moment change were performed and compared completely. The data were analyzed further based on our experimental results. Furthermore, the absorption and fluorescence spectra were calculated in theory and compared with the measured ones. The rate constant of internal proton transfer (9.831×10¹¹ s^?1) of C1 was much lower than that of salicylidene methylamine ( C3 , 2.045×10¹⁵ s^?1), which was a typical Schiff base compound and was well demonstrated to undergo ESIPT easily under photoexcitation.     

Molecular origins of optoelectronic properties in coumarin dyes: toward designer solar cell and laser applications

Coumarin derivatives are used in a wide range of applications, such as dye-sensitized solar cells (DSCs) and dye lasers, and have therefore attracted considerable research interest. In order to understand the molecular origins of their optoelectronic properties, molecular structures for 29 coumarin laser dyes are statistically analyzed. To this end, data for 25 compounds were taken from the Cambridge Structural Database and compared with data for four new crystal structures of coumarin laser dyes [Coumarin 487 (C(19)H(23)NO(2)), Coumarin 498 (C(16)H(17)NO(4)S), Coumarin 510 (C(20)H(18)N(2)O(2)), and Coumarin 525 (C(22)H(18)N(2)O(3))], which are reported herein. The competing contributions of different resonance states to the bond lengths of the 4- and 7-substituted coumarin laser dyes are computed based on the harmonic oscillator stabilization energy model. Consequently, a positive correlation between the contribution of the para-quinoidal resonance state and the UV-vis peak absorption wavelength of these coumarins is revealed. Furthermore, the perturbations of optoelectronic properties, owing to chemical substituents in these coumarin laser dyes, are analyzed: it is found that their UV-vis peak absorption and lasing wavelengths experience a red shift, as the electron-donating strength of the 7-position substituent increases and/or the electron-withdrawing strength of the 3- or 4-position substituent rises; this conclusion is corroborated by quantum-chemical calculations. It is also revealed that the closer the relevant substituents align with the direction of the intramolecular charge transfer (ICT), the larger the spectral shifts and the higher the molar extinction coefficients of coumarin laser dyes. These findings are important for understanding the ICT mechanism in coumarins. Meanwhile, all structure-property correlations revealed herein will enable knowledge-based molecular design of coumarins for dye lasers and DSC applications.     

Host-Guest Interactions and Laser Activity in AlPO4-5/Laser Dye Composites

In situ inclusion of the laser dyes coumarin 466, coumarin 7, pyridine 2 and DCM has been conducted successfully in AlPO₄-5 crystals. The charged molecule pyridine 2 interacts with the framework and leads to bundle-like morphologies with increasing dye content. Uncharged molecules (DCM, coumarin 7, coumarin 466) are included, although corresponding molecular dimensions are exceeding pore size. These dyes probably induce local defects in the pore walls of AlPO₄-5 which are healed during crystal growth leading to well-developed hexagonal prisms. Spectroscopic studies show interactions of the dyes with the solid-state matrix which are reflected by shifts of absorption and emission maxima of the dyes. For the first time, laser activity is demonstrated on a perfect hexagonal single AlPO₄-5/DCM crystal.     

Enantioselective Intramolecular [2+2] Photocycloaddition Reactions of 4‐Substituted Coumarins Catalyzed by a Chiral Lewis Acid

Eight coumarins, which carry a terminal alkene tethered by a CH₂XCH₂ group to their 4‐position (X=CH₂, CMe₂, O, S, NBoc, NZ, NTs, NBn), were synthesized in overall yields of 51–80 %. Starting materials for the syntheses were either commercially available 4‐hydroxycoumarin or 4‐formylcoumarin. The intramolecular [2+2] photocycloaddition of these coumarins gave diastereoselectively products with a tetracyclic 3,3a,4,4a‐tetrahydro‐1H‐cyclopenta[2,3]cyclobuta[1,2‐c]chromen‐5(2H)‐one skeleton. Direct irradiation at λ=300 nm in dichloromethane (c=10 mM ) led to product formation in good yields for most substrates, presumably via a singlet excited state intermediate. Due to the low coumarin absorption at λ >350 nm the photocycloaddition was slow upon irradiation at λ=366 nm. Addition of a chiral oxazaborolidine‐based Lewis acid (50 mol %) increased the reaction rate at λ=366 nm and induced a significant enantioselectivity in the [2+2] photocycloaddition. Six out of eight coumarin substrates (X=CH₂, CMe₂, O, NBoc, NZ, NTs) gave the respective products in yields of 72–96 % and with 74–90 % enantiomeric excess (ee) upon irradiation in dichloromethane (c=20 mM ) at ?75 °C. The Lewis acid presumably acts by coordination to the coumarin carbonyl oxygen atom, which leads to a bathochromic shift (redshift) of the UV absorption and which increases the singlet state lifetime. A second electrostatic interaction of the hydrogen atom at C3 with the oxygen atom of the oxazaborolidine is likely.     

A General Strategy for Development of Near‐Infrared Fluorescent Probes for Bioimaging

Near‐infrared (NIR) fluorescent dyes with favorable photophysical properties are highly useful for bioimaging, but such dyes are still rare. The development of a unique class of NIR dyes via modifying the rhodol scaffold with fused tetrahydroquinoxaline rings is described. These new dyes showed large Stokes shifts (>110 nm). Among them, WR3, WR4, WR5, and WR6 displayed high fluorescence quantum yields and excellent photostability in aqueous solutions. Moreover, their fluorescence properties were tunable by easy modifications on the phenolic hydroxy group. Based on WR6, two NIR fluorescent turn‐on probes, WSP‐NIR and SeSP‐NIR, were devised for the detection of H₂S. The probe SeSP‐NIR was applied in visualizing intracellular H₂S. These dyes are expected to be useful fluorophore scaffolds in the development of new NIR probes for bioimaging.     

Synthesis of novel coumarin and benzocoumarin derivatives and their biological and photophysical studies

Several derivatives of coumarin‐3N‐carboxamides ( 3‐21 ) have been prepared via the reaction of the coumarin‐3‐carbonyl chloride ( 1 ) with a number of nucleophiles. Novel double‐headed coumarin‐3N‐carboxamides ( 26‐33 ) were also produced using the same method. The Pechmann‐Duisberg reaction was applied to prepare new benzo[f]‐ benzo[h]coumarins and 4‐(chloromethyl)‐pyrano[3,2‐c]coumarin‐2‐one ( 36‐42 ). The reaction of 1‐chloromethylbenzo[f]coumarins ( 36 ) with cyanide anion under different reaction conditions was also investigated in order to assess its suitability for nucleophilic substitution reactions as well as ring transformation products ( 43‐49 ). Synthesis of 1‐((benzo[d]thiazol‐2‐yl)methyl)‐9‐hydroxybenzo[ f ]coumarin ( 50 ) represented the first example of methylene bridge‐head heterocyclecontaining benzo[f]coumarin. Some of the newly prepared coumarins exhibited anti‐bacterial activity against Gram Positive and Gram negative bacteria. Compound 36d was found to be active against all the screened bacteria. Photophysical studies were performed on selected fluorescent benzo[f]‐ and benzo[h]coumarin and the quantum yields were also calculated. All new compounds were characterized by IR, MS, ¹H and ¹³C NMR, as well as elemental analysis.     

13C NMR spectroscopy of coumarin derivatives

The ¹³C chemical shifts of 209 naturally occurring and synthetic coumarin derivatives are listed and a number of methods for signal assignments are explained. Substituent effects on ¹³C chemical shifts (SCS) in monosubstituted coumarins and non-additivities of SCS in coumarins with more than one substituent are discussed in detail.     

Trans‐A2B‐corroles Bearing a Coumarin Moiety ‐ From Synthesis to Photophysics

Four dyads comprised of corrole and coumarin units have been synthesised. Three coumarincarboxaldehydes were synthesized and transformed into the corresponding trans‐A₂B‐corroles by reaction with 5‐(pentafluorophenyl)dipyrromethane. It has been proven that this type of direct condensation can lead to the corresponding corroles in moderate yields. The reaction of hydroxybenzaldehydes with vinylphosphonium salts has been identified as the most general method for the preparation of formyl‐coumarins with various patterns of substituents. The dyad consisting of ketobiscoumarin and corrole was synthesized by Sonogashira coupling. Spectroscopic and photophysical investigations revealed that there is an efficient energy transfer from the coumarin moiety to corrole in all four dyads. Energy transfer can be clearly ascribed to a dipole–dipole mechanism (Förster) for all dyads that contain luminescent coumarins and to an electron exchange mechanism (Dexter) for the dyad with the non‐luminescent one. In the case of the dyad that bears coumarin with a hydroxy group at position 5, an electron‐transfer was detected from corrole to coumarin. The latter process is possible because of the suitably low reduction potential of coumarins of this type.     

Emulsion copolymerization of vinyl acetate and butyl acrylate in the presence of fluorescent dyes

This article describes our first experiments for preparing dye‐labeled latex particles by the emulsion copolymerization of a 4/1 (w/w) mixture of vinyl acetate‐butylacrylate (VAc‐BA). We discuss the synthesis of acrylate derivatives of phenanthrene, anthracene, and pyrene [9‐acryloxymethyl phenanthrene ( 7 ), 9‐acryloxymethyl‐10‐methyl anthracene ( 8 ), and 1‐acryloxymethyl pyrene ( 10 )] and an allyl ether derivative of anthracene [9‐allyoxymethyl‐10‐methyl anthracene ( 9 )]. Although the phenanthrene derivative 7 gave latex particles with high monomer conversion and good dye incorporation, the pyrene acrylate and both anthracene comonomers strongly inhibited the free‐radical reaction. To assist our search for a dye that would serve as a useful energy acceptor for phenanthrene and without suppressing VAc‐BA polymerization, we also examined batch emulsion polymerization in the presence of a variety of dye derivatives—substituted anthracenes, acridines, a coumarin, and two benzophenone derivatives. All of the anthracene derivatives, as well as acridine, strongly inhibited monomer polymerization. The coumarin dye 7‐hydroxy‐4‐methyl coumarin ( 22 ) that had only limited solubility allowed more than 90% monomer conversion. Most promising were 2‐hydroxy‐5‐methyl benzophenone ( 23 ) and 4‐N,N‐dimethylamino benzophenone ( 24 ) that at 1 mol % in the monomer mixture permitted virtually quantitative monomer conversion to latex. 4′‐Dimethylamino‐2‐acryloxy‐5‐methyl benzophenone ( 25 ) copolymerized well with the VAc‐BA mixture, yielding latex particles in high yield and with a narrow size distribution. These dyes appear to be useful acceptor dyes for energy‐transfer experiments with phenanthrene. © 2002 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 40: 1594–1607, 2002     

Effect of Structure and Conformation on Fluorescence Properties in Novel Coumarin‐based Mannich Base Dyes

Twelve novel coumarin‐based Mannich base dyes have been synthesized via introducing functional aminomethyl group at the 8 position of coumarin ring by Mannich reaction and their chemical structures were confirmed by IR, ¹H NMR, MS and elemental analysis. Moreover, the fluorescence intensities and relative quantum yields of all the dyes were measured and studied. The results illustrated that the heavy atom effect was obvious in our designed system and there was a relationship between the structures, the conformations and the fluorescence spectra of the coumarins. Meanwhile, the present β‐CD titration experiment illustrated that the aniline nitrogen atom was closely related to the photoinduced electron transfer (PET) course and the PET course was carried out via a conformational control mechanism.     

NMR studies of the electronic structure of coumarins

¹H and¹³C NMR spectra of a series of coumarin dyes used as active laser media are studied. Electron densities and ring currents are calculated. Formulas for calculating¹³C NMR chemical shifts from quantum mechanical data for aminocoumarins are suggested. NMR data and electronic structure calculations are used to explain the generation properties of coumarins. Translated fromZhurnal Strukturnoi Khimii, Vol. 38, No. 3, pp. 495–502, May–June, 1997.     

Straightforward Access to Water‐Soluble Unsymmetrical Sulfoxanthene Dyes: Application to the Preparation of Far‐Red Fluorescent Dyes with Large Stokes’ Shifts

An efficient synthesis of water‐soluble unsymmetrical sulforhodamine/sulforhodol fluorophores containing a single julolidine fragment is presented. Owing to their valuable spectral properties in aqueous buffers, these dyes, especially those bearing a free aniline or phenol moiety, are valuable components of fluorogenic probes for a variety of biosensing applications. A further extension of this synthetic methodology to unusual phenols, namely 7‐N,N‐dialkylamino‐4‐hydroxy coumarins has enabled us to provide a new family water‐soluble dyes of large Stokes’ shift with far‐red spectral features.     

Water‐Soluble Red‐Emitting Distyryl‐Borondipyrromethene (BODIPY) Dyes for Biolabeling

A series of water‐soluble red‐emitting distyryl‐borondipyrromethene (BODIPY) dyes were designed and synthesized by using three complementary approaches aimed at introducing water‐solubilizing groups on opposite faces of the fluorescent core to reduce or completely suppress self‐aggregation. An additional carboxylic acid functional group was introduced at the pseudo‐meso position of the BODIPY scaffold for conjugation to amine‐containing biomolecules/biopolymers. The optical properties of these dyes were evaluated under simulated physiological conditions (i.e., phosphate‐buffered saline (PBS), pH 7.5) or in pure water. The emission wavelength (λ_max) of these labels was found in the 640–660 nm range with quantum yields from modest to unprecedentedly high values (4 to 38 %). The bioconjugation of these distyryl‐BODIPY dyes with bovine serum albumin (BSA) and the monoclonal antibody (mAb) 12A5 was successfully performed under mild aqueous conditions.     

Synthesis of Novel 3‐(3‐(5‐Methylisoxazol‐3‐yl)‐7H‐[1,2,4]Triazolo [3,4‐b][1,3,4]Thiadiazin‐6‐yl)‐2H‐Chromen‐2‐Ones

A novel series of coumarin substituted triazolo‐thiadiazine derivatives were designed and synthesized by using 5‐methyl isoxazole‐3‐carboxylic acid ( 1 ), thiocarbohydrazide ( 2 ), and various substituted 3‐(2‐bromo acetyl) coumarins ( 4a , 4b , 4c , 4e , 4d , 4f , 4g , 4h , 4i , 4j ). Fusion of 5‐methyl isoxazole‐3‐carboxylic acid with thiocarbohydrazide resulted in the formation of the intermediate 4‐amino‐5‐(5‐methylisoxazol‐3‐yl)‐4H‐1,2,4‐triazole‐3‐thiol ( 3 ). This intermediate on further reaction with substituted 3‐(2‐bromo acetyl) coumarins under simple reaction conditions formed the title products 3‐(3‐(5‐methylisoxazol‐3‐yl)‐7H‐[1,2,4]triazolo[3,4‐b][1,3,4]thiadiazin‐6‐yl‐2H‐chromen‐2‐ones ( 5a , 5b , 5c , 5d , 5e , 5f , 5g , 5h , 5i , 5j ) in good to excellent yields. All the synthesized compounds were well characterized by physical, analytical, and spectroscopic techniques.