Far‐Infrared Spectra of Yttrium‐Doped Gold Clusters AunY (n=1–9)

The geometric, spectroscopic, and electronic properties of neutral yttrium‐doped gold clusters Au_nY (n=1–9) are studied by far‐infrared multiple photon dissociation (FIR‐MPD) spectroscopy and quantum chemical calculations. Comparison of the observed and calculated vibrational spectra allows the structures of the isomers present in the molecular beam to be determined. Most of the isomers for which the IR spectra agree best with experiment are calculated to be the energetically most stable ones. Attachment of xenon to the Au_nY cluster can cause changes in the IR spectra, which involve band shifts and band splittings. In some cases symmetry changes, as a result of the attachment of xenon atoms, were also observed. All the Au_nY clusters considered prefer a low spin state. In contrast to pure gold clusters, which exhibit exclusively planar lowest‐energy structures for small sizes, several of the studied species are three‐dimensional. This is particularly the case for Au₄Y and Au₉Y, while for some other sizes (n=5, 8) the 3D structures have an energy similar to that of their 2D counterparts. Several of the lowest‐energy structures are quasi‐2D, that is, slightly distorted from planar shapes. For all the studied species the Y atom prefers high coordination, which is different from other metal dopants in gold clusters.     

Ultrafast Vibrational Population Transfer Dynamics in 2‐Acetylcyclopentanone Studied by 2D IR Spectroscopy

2‐Acetylcyclopentanone (2‐ACP), which is a β‐dicarbonyl compound, undergoes keto–enol isomerization, and its enol tautomers are stabilized by a cyclic intramolecular hydrogen bond. 2‐ACP (keto form) has symmetric and asymmetric vibrational modes of the two carbonyl groups at 1748 and 1715 cm^?1, respectively, which are well separated from the carbonyl modes of its enol tautomers in the FTIR spectrum. We have investigated 2‐ACP dissolved in carbon tetrachloride by 2D IR spectroscopy and IR pump–probe spectroscopy. Vibrational population transfer dynamics between the two carbonyl modes were observed by 2D IR spectroscopy. To extract the population exchange dynamics (i.e., the down‐ and uphill population transfer rate constants), we used the normalized volumes of the cross‐peaks with respect to the diagonal peaks at the same emission frequency and the survival and conditional probability functions. As expected, the downhill population transfer time constant (3.2 ps) was measured to be smaller than the uphill population transfer time constant (3.8 ps). In addition, the vibrational population relaxation dynamics of the two carbonyl modes were observed to be the same within the experimental error and were found to be much slower than vibrational population transfer between two carbonyl modes.     

Ultrafast Structural Dynamics of Biomolecules Examined by Multiple‐Mode 2D IR Spectroscopy: Anharmonically Coupled Motions are in Harmony

Quantum chemical computations, molecular dynamics simulations, and linear and nonlinear infrared spectral simulations are carried out for four representative biomolecules: cellobiose, alanine tripeptide, L ‐α‐glycerylphosphorylethanolamine, and the DNA base monomer guanine. Anharmonic transition frequencies and anharmonicities for the molecules in vacuum are evaluated. Instantaneous normal‐mode analysis is performed and the vibrational frequency distribution correlations are examined for the molecules solvated in TIP3P water. Many local and regional motions of the biomolecules are predicted to be anharmonically coupled and their vibrational frequencies are predicted to be largely correlated. These coupled and correlated vibrational motions can be easily visualized by pairwise cross peaks in the femtosecond broadband two‐dimensional infrared (2D IR) spectra, which are simulated using time‐domain third‐order nonlinear response functions. A network of distinctive spectral profiles of the 2D IR cross peaks, including peak orientations and positive and negative signal patterns, are shown to be intimately connected with the couplings and correlations. The results show that the vibrational couplings and correlations, driven by solvent interactions and also by intrinsic vibrational interactions, are vibrational mode dependent and thus chemical group dependent, and form the structural and dynamical basis of the anharmonic vibrators that are ubiquitous in biomolecules.     

Dehydrogenation and dehalogenation of amines in MALDI‐TOF MS investigated by isotopic labeling

Secondary and tertiary amines have been reported to form [M–H]⁺ that correspond to dehydrogenation in matrix‐assisted laser desorption ionization time of flight mass spectrometry (MALDI‐TOF MS). In this investigation, we studied the dehydrogenation of amines in MALDI‐TOF MS by isotopic labeling. Aliphatic amines were labeled with deuterium on the methylene of an N‐benzyl group, which resulted in the formation of [M–D]⁺ and [M–H]⁺ ions by dedeuteration and dehydrogenation, respectively. This method revealed the proton that was removed. The spectra of most tertiary amines with an N‐benzyl group showed high‐intensity [M–D]⁺ and [M–H]⁺ ion peaks, whereas those of secondary amines showed low‐intensity ion peaks. Ratios between the peak intensities of [M–D]⁺ and [M–H]⁺ greater than 1 suggested chemoselective dehydrogenation at the N‐benzyl groups. The presence of an electron donor group on the N‐benzyl groups enhanced the selectivity. The dehalogenation of amines with an N‐(4‐halobenzyl) group was also observed alongside dehydrogenation. The amino ions from dehalogenation can undergo second dehydrogenation. These results provide the first direct evidence about the position at which dehydrogenation of an amine occurs and the first example of dehalogenation of haloaromatic compounds in MALDI‐TOF MS. These results should be helpful in the structural identification and elucidation of synthetic and natural molecules. Copyright © 2013 John Wiley & Sons, Ltd.     

N‐Alkylacylamides in Thin Films Display Infrared Spectra of 310‐, α‐, and π‐Helices with Visible Static and Dynamic Growth Phases

A peptide model is a physical system containing a CONH group, the simplest being HCONHCH₃, N‐methylformamide (NMF). We have discovered that NMF and N‐methylacetamide (NMA), which form hydrogen‐bonded oligomers in thin films on a planar AgX fiber, display infrared (IR) spectra with peaks like those of polypeptide helices. Structures can be assigned by their amide I maxima near 1672 (3₁₀), 1655 (3₁₀), 1653 (α), 1655 (π), and 1635 cm^?1 (π), which are the first IR data for the π‐helix. Sharp peaks are an outcome of immobilization of polar species on the polar surface of silver halides. We report the first use of expanded thin‐film IR spectroscopy, in which plots of every spectrum over the amide I–II range show pauses or slow stages in the increase or decrease of absorption. These are identified as static phases followed by dynamic phases, with the incremental gain or loss of a helix turn. A general theory can be stated for such processes. Density functional calculations show that the NMA α‐helix pentamer (crystal structure geometry) is transformed into a π‐helix‐like form. For the first time, an entire sequence (3₁₀‐helix, α‐helix, π‐helix, quasiplanar species) of spectra has been recorded for NMA.     

Intermediates Involved in the Oxidation of Nitrogen Monoxide: Photochemistry of the cis‐N2O2⋅O2 complex and of sym‐N2O4 in Solid Ne Matrices

Pure sym‐N₂O₄ isolated in solid Ne was obtained by passing cold neon gas over solid N₂O₄ at ?115 °C and quenching the resulting gaseous mixture at 6.3 K. Filtered UV irradiation (260–400 nm) converts sym‐N₂O₄ into trans‐ONONO₂, a weakly interacting (NO₂)₂ radical pair, and traces of the cis‐N₂O₂?O₂ complex. Besides the weakly bound ON?O₂ complex, cis‐N₂O₂?O₂ was also obtained by co‐deposition of NO and O₂ in solid Ne at 6.3 K, and both complexes were characterised by their matrix IR spectra. Concomitantly formed cis‐N₂O₂ dissociated on exposure to filtered IR irradiation (400–8000 cm^?1), and the cis‐N₂O₂?O₂ complex rearranged to sym‐N₂O₄ and trans‐ONONO₂. Experiments using ¹⁸O₂ in place of ¹⁶O₂ revealed a non‐concerted conversion of cis‐N₂O₂?O₂ into these species, and gave access to four selectively di‐¹⁸O‐substituted trans‐ONONO₂ isotopomers. No isotopic scrambling occurred. The IR spectra of sym‐N₂O₄ and of trans‐ONONO₂ in solid Ne were recorded. IR fundamentals of trans‐ONONO₂ were assigned based on experimental ^16/18O isotopic shifts and guided by DFT calculations. Previously reported contradictory measurements on cis‐ and trans‐ONONO₂ are discussed. Dinitroso peroxide, ONOONO, a proposed intermediate in the IR photoinduced rearrangement of cis‐N₂O₂?O₂ to the various N₂O₄ species, was not detected. Its absence in the photolysis products indicates a low barrier (≤10 kJ mol^?1) for its exothermic O? O bond homolysis into a (NO₂)₂ radical pair.     

Mixed IR/Vis Two‐Dimensional Spectroscopy: Chemical Exchange beyond the Vibrational Lifetime and Sub‐ensemble Selective Photochemistry

Two‐dimensional exchange spectroscopy (2D EXSY) is a powerful method to study the interconversion (chemical exchange) of molecular species in equilibrium. This method has recently been realized in femtosecond 2D‐IR spectroscopy, dramatically increasing the time resolution. However, current implementations allow the EXSY signal (and therefore the chemical process of interest) only to be tracked during the lifetime (T₁) of the observed spectroscopic transition. This is a severe limitation, as typical vibrational T₁ are only a few ps. An IR/Vis pulse sequence is presented that overcomes this limit and makes the EXSY signal independent of T₁. The same pulse sequence allows to collect time‐resolved IR spectra after electronic excitation of a particular chemical species in a mixture of species with strongly overlapping UV/Vis spectra. Different photoreaction pathways and dynamics of coexisting isomers or of species involved in different intermolecular interactions can thus be revealed, even if the species cannot be isolated because they are in rapid equilibrium.     

Two‐Step Spin Transition in a 1D FeII 1,2,4‐Triazole Chain Compound

A thermochromic 1D spin crossover coordination (SCO) polymer [Fe(βAlatrz)₃](BF₄)₂ ? 2 H₂O ( 1? 2 H₂O), whose precursor βAlatrz, (1,2,4‐triazol‐4‐yl‐propionate) has been tailored from a β‐amino acid ester is investigated in detail by a set of superconducting quantum interference device (SQUID), ⁵⁷Fe Mössbauer, differential scanning calorimetry, infrared, and Raman measurements. An hysteretic abrupt two‐step spin crossover (T_1/2^↓=230 K and T_1/2^↑=235 K, and T_1/2^↓=172 K and T_1/2^↑=188 K, respectively) is registered for the first time for a 1,2,4‐triazole‐based Fe^II 1D coordination polymer. The two‐step SCO configuration is observed in a 1:2 ratio of low‐spin/high‐spin in the intermediate phase for a 1D chain. The origin of the stepwise transition was attributed to a distribution of chains of different lengths in 1? 2 H₂O after First Order Reversal Curves (FORC) analyses. A detailed DFT analysis allowed us to propose the normal mode assignment of the Raman peaks in the low‐spin and high‐spin states of 1? 2 H₂O. Vibrational spectra of 1? 2 H₂O reveal that the BF₄^? anions and water molecules play no significant role on the vibrational properties of the [Fe(βAlatrz)₃]²⁺ polymeric chains, although non‐coordinated water molecules have a dramatic influence on the emergence of a step in the spin transition curve. The dehydrated material [Fe(βAlatrz)₃](BF₄)₂ ( 1 ) reveals indeed a significantly different magnetic behavior with a one‐step SCO which was also investigated.     

Understanding J‐Modulation during Spatial Encoding for Sensitivity‐Optimized Ultrafast NMR Spectroscopy

Ultrafast (UF) NMR spectroscopy is an approach that yields 2D spectra in a single scan. This methodology has become a powerful analytical tool that is used in a large array of applications. However, UF NMR spectroscopy still suffers from an intrinsic low sensitivity, and from the need to compromise between sensitivity, spectral width, and resolution. In particular, the modulation of signal intensities by the spin–spin J‐coupling interaction (J‐modulation) impacts significantly on the intensities of the spectral peaks. This effect can lead to large sensitivity losses and even to missing spectral peaks, depending on the nature of the spin system. Herein, a general simulation package (Spinach) is used to describe J‐modulation effects in UF experiments. The results from simulations match with experimental data and the results of product operator calculations. Several methods are proposed to optimize the sensitivity in UF COSY spectra. The potential and drawbacks of the different strategies are also discussed. These approaches provide a way to adjust the sensitivity of UF experiments for a large range of applications.     

Stimuli-Responsive Polymers in Solution Investigated by NMR and Infrared Spectroscopy

Summary: Temperature-induced and solvent composition-induced phase separation in solutions of poly(N-isopropylmethacrylamide) (PIPMAm) and other thermoresponsive polymers as studied by NMR and infrared (IR) spectroscopy is discussed. The fraction p of phase-separated units (units with significantly reduced mobility) and subsequently, e.g., thermodynamic parameters characterizing the coil-globule phase transition induced by temperature, were determined from reduced integrated intensities in high-resolution ¹H NMR spectra. This approach can be especially useful in investigations of phase separation in solutions of binary polymer systems. Information on behaviour of water during temperature-induced phase transition was obtained from measurements of ¹H NMR relaxation times of HDO molecules. NMR and IR spectroscopy were used to investigate PIPMAm solutions in water/ethanol (D₂O/EtOH) mixtures where the phase separation can be induced by solvent composition (cononsolvency). Some differences in globular-like structures induced by temperature and solvent composition were revealed by these methods.     

Synthesis and Characterization of a Series of New Asymmetric Salphen Mono- and Binuclear Metal Complexes

Two novel asymmetric salen ligands H₂L¹ [N‐phenyl‐N‐(2‐hydroxy‐5‐methylphenyl)‐N′‐(2‐hydroxy‐3‐meth‐ oxylphenyl)‐o‐phenyldiamine] and H₂L² [N‐phenyl‐N‐(2‐hydroxy‐5‐chlorophenyl)‐N′‐(2‐hydroxy‐3‐methoxyl‐ phenyl)‐o‐phenyldiamine] and their metal complexes MLⁿ (M=Zn, Co, Ni, Cu; n=1, 2) have been prepared and characterized by elemental analyses, ¹H NMR, ESI‐MS, FT‐IR and UV‐Vis spectra. In particular, the complex ZnL¹, the binuclear monosalphen complex, was synthesized and studied in detail using ¹H NMR and ESI‐MS techniques. For other metal complexes under the same reaction conditions, only mononuclear complexes were obtained. The results are relevant to both the metal ions and the structure of ligands.     

Theoretical Simulation of Vibrational Sum‐Frequency Generation Spectra from Density Functional Theory: Application to p‐Nitrothiophenol and 2,4‐Dinitroaniline

The molecular orientation of adsorbed molecules forming self‐assembled monolayers can be determined by combining vibrational sum‐frequency generation (SFG) measurements with quantum chemical calculations. Herein, we present a theoretical methodology used to simulate the SFG spectra for different combinations of polarizations. These simulations are based on calculations of the IR vectors and Raman tensors, which are obtained from density functional theory computations. The dependency of the SFG vibrational signature with respect to the molecular orientation is presented for the molecules p‐nitrothiophenol and 2,4‐dinitroaniline. It is found that a suitable choice of basis set as well as of exchange‐correlation (XC) functional is mandatory to correctly simulate the SFG intensities and consequently provide an accurate estimation of the adsorbed molecule orientation. Comparison with experimental data shows that calculations performed at the B3LYP/6‐311++G(d,p) level of approximation provide good agreement with experimental frequencies, and with IR and Raman intensities. In particular, it is demonstrated that polarization and diffuse functions are compulsory for reproducing the IR and Raman spectra, and consequently vibrational SFG spectra, of systems such as p‐nitrothiophenol. Moreover, the investigated XC functionals reveal their influence on the relative intensities, which show rather systematic variations with the amount of Hartree–Fock exchange. Finally, further aspects of the modeling are revealed by considering the frequency dependence of the Raman tensors.     

Charge‐transfer transitions and optic spectra of chromites: A model computation

In the cluster approach, we consider the peculiarities of charge‐transfer (CT) states and CT O 2p → Cr 3d transitions in the octahedral (CrO₆)^9? complex. We have computed the reduced matrix elements of electric‐dipole transition operator on many‐electron wave functions — the initial and final states of CT transitions. We have parameterized the obtained results and computed the relative intensities of various allowed CT transitions in the absence of the mixing of CT configurations having the same symmetry. Using the Tanabe‐Sugano technique, we have taken into account this mixing and obtained the energies of many‐electron CT transitions and their actual intensities as well. We have also allowed for the Coulomb interaction between the 2p‐electrons of the O^2? ligands and the 3d‐electrons of the central Cr³⁺ ion in the (CrO₆)^9? cluster. This interaction proved insignificant for the optic spectra. Modeling the optic spectrum of chromium‐based oxides has yielded a complicated CT band consisting of 33 lines with the main maximum at about 7 eV and satellites in the range of 4–5 and 8–9 eV. The total extent of the CT band is about 8 eV. The model spectrum is in satisfactory agreement with experimental data, which shows the limited validity of the generally accepted notion of a simple structure of CT spectra. © 2010 Wiley Periodicals, Inc. Int J Quantum Chem, 2011     

One‐ and two‐dimensional NMR characterization of N‐vinyl‐2‐pyrrolidone/methyl acrylate copolymers

N‐vinyl‐2‐pyrrolidone/methyl acrylate (V/M) copolymers were prepared by free‐radical bulk polymerization using benzoyl peroxide as an initiator. The copolymer composition of these copolymers was calculated from ¹H NMR spectra. The radical reactivity ratios for N‐vinyl‐2‐pyrrolidone (V) and methyl acrylate (M) were r_V = 0.09, r_M = 0.44. These reactivity ratios for the copolymerization of V and M were determined using the Kelen–Tudos and nonlinear least‐squares error‐in‐variable methods. The ¹³C{¹H} and ¹H NMR spectra of these copolymers overlapped and were complex. The complete spectral assignment of the ¹³C and ¹H NMR spectra were done with distortionless enhancement by polarization transfer and two dimensional ¹³C‐¹H heteronuclear single quantum correlation spectroscopic experiments. The two‐dimensional ¹H‐¹H homonuclear total correlation spectroscopic NMR spectrum showed the various bond interactions, thus inferring the possible structure of the copolymers. © 2002 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 40: 2225–2236, 2002     

One‐ and two‐dimensional NMR characterization of N‐vinyl‐2‐pyrrolidone/methyl acrylate copolymers

N‐vinyl‐2‐pyrrolidone/methyl acrylate (V/M) copolymers were prepared by free‐radical bulk polymerization using benzoyl peroxide as an initiator. The copolymer composition of these copolymers was calculated from ¹H NMR spectra. The radical reactivity ratios for N‐vinyl‐2‐pyrrolidone (V) and methyl acrylate (M) were r_V = 0.09, r_M = 0.44. These reactivity ratios for the copolymerization of V and M were determined using the Kelen–Tudos and nonlinear least‐squares error‐in‐variable methods. The ¹³C{¹H} and ¹H NMR spectra of these copolymers overlapped and were complex. The complete spectral assignment of the ¹³C and ¹H NMR spectra were done with distortionless enhancement by polarization transfer and two dimensional ¹³C‐¹H heteronuclear single quantum correlation spectroscopic experiments. The two‐dimensional ¹H‐¹H homonuclear total correlation spectroscopic NMR spectrum showed the various bond interactions, thus inferring the possible structure of the copolymers. © 2002 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 40: 2225–2236, 2002     

Ionization‐Induced Solvent Migration in Acetanilide‐Methanol Clusters Inferred from Isomer‐Selective Infrared Spectroscopy

We present the resonance‐enhanced multiphoton ionization, infrared‐ultraviolet hole burning (IR‐UV HB), and IR dip spectra of the trans‐acetanilide–methanol (AA–MeOH) cluster in the S₀, S₁, and cationic ground state (D₀) in a supersonic jet. The IR‐UV HB spectra demonstrate the co‐existence of two isomers in S_0,1, in which MeOH binds either to the NH or the CO site of the peptide linkage in AA, denoted as AA(NH)–MeOH and AA(CO)–MeOH. When AA(CO)–MeOH is selectively ionized, its IR spectrum in D₀ is the same as that measured for AA⁺(NH)–MeOH. Thus, photoionization of AA(CO)–MeOH induces migration of MeOH from the CO to the NH site with 100% yield.     

On the Solvent‐free Structure of a Jäger‐type Cobalt(II) N2O2‐Chelate Complex

A combined synchrotron X‐ray and density functional theory (DFT) study on the structure of a Jäger‐type N₂O₂ chelate complex was carried out. The ethoxy‐substituted bis(3‐oxo‐enaminato)cobalt(II) complex ( 1 ) was an original sample from the laboratory of the late Professor Ernst‐G. Jäger (University of Jena, Germany). Single‐crystal X‐ray analysis revealed essentially flat molecules of 1 , which are unsolvated and coordinatively unsaturated. The DFT calculations on the isolated molecule predict a planar structure for the non‐hydrogen atoms, which is a local minimum on the energy surface. The crystal packing is achieved through off‐set stacking (staircase arrangement), resulting in a herringbone pattern in the space group P2₁2₁2₁. The structure of 1 is compared to known structures of related bis(3‐oxo‐enaminato)cobalt(II) complexes ( 2 – 4 ). Original bulk material of 1 was investigated by scanning electron microscopy (SEM), powder X‐ray diffraction (PXRD), melting point determination, and infrared (IR) spectroscopy.     

Methanol‐induced change of the mechanism of the temperature‐ and pressure‐induced collapse of N‐Substituted acrylamide copolymers

The solvation of two differently composed linear statistical copolymers from N,N‐diethyl acrylamide (DEAm) and N‐isopropyl acrylamide is studied by Fourier‐transform infrared spectroscopy. The solvent is changed from pure water to mixtures with methanol to investigate the cononsolvency effect. Furthermore, the influence of temperature and pressure is studied. The IR results are interpreted by sub‐band fitting of the amide I' band and quantum–chemical calculations. There are significant differences between the two copolymers that cannot be explained by a weighted superposition of the homopolymer spectra. An excess of DEAm units leads to a high number of nonsolvated side chains already in pure water. This high number is reached for equimolar copolymers only when methanol is added. The mechanism of the temperature‐ or pressure‐induced phase transition changes upon methanol addition for both copolymers. Generally, the phenomena are deduced to cooperativity at equimolar composition that is perturbed by methanol. © 2015 Wiley Periodicals, Inc. J. Polym. Sci., Part B: Polym. Phys. 2015 , 53, 532–544     

Structures and Properties of Three Solvent‐Dependent Chiral Compounds Based on N‐Benzoyl‐L‐glutamic Acid

Three solvent‐dependent chiral copper(II) compounds, {[Cu₂(bzgluO)₂(H₂O)₂]·4H₂O}_n ( 1 ), {[Cu₂(bzgluO)₂(DMSO)₂]·H₂O}_n ( 2 ) and [Cu₂(bzgluO)₂(DMF)₂]_n ( 3 ) (H₂bzgluO=N‐benzoyl‐L‐glutamic acid) have been synthesized under ambient temperature conditions and characterized by elemental analysis, IR spectra, UV spectra, thermogravimetric analysis, powder X‐ray diffraction (PXRD) and single‐crystal X‐ray diffraction. Compounds 1 and 2 both crystallize in the orthorhombic space group P2₁2₁2₁. Compound 3 crystallizes in the tetragonal space group P4₃. Compound 1 exhibits a ladder‐like 1D chain structure, which is extended by hydrogen‐bonding interactions to form a 3D supramolecular network. Compounds 2 and 3 both give a diamond‐like 3D structure. Besides, there are hydrogen‐bonding interactions in 2 . The structural difference indicates that the solvent system plays a crucial role in modulating structures of coordination compounds. Circular dichroism (CD) and the magnetic properties of the compounds have also been investigated.     

A mass spectrometry‐based method for differentiation of positional isomers of monosubstituted pyrazine N‐oxides using metal ion complexes

A series of 11 pairs of substituted pyrazine N‐oxides, differing in the substituent position, were examined using electrospray ionization mass spectrometry (ESI‐MS) in order to use spectra to assess the differentiation of positional isomers. For each compound, mass spectra were recorded with three different metal cations, namely calcium (II), copper (II) and aluminum (III), with characterization of the observed peaks. Differentiation between regioisomeric N‐oxides has been achieved by comparison of the identity and relative intensities of the peaks originating from the adduct ions formed with the metal ions. Principal component analysis (PCA) has been employed to assist in the interpretation of the results obtained with each metal ion, exploring possible trends according to the nature and position of the substituent in the pyrazine N‐oxide. Copyright © 2015 John Wiley & Sons, Ltd.