芝麻致敏原的实时荧光PCR检测

针对芝麻Sesamum indicum 2S albumin mRNA基因设计引物、探针,在实时荧光PCR仪上进行扩增、检测和分析.结果显示:该组探针和引物对芝麻有很强的特异性,除黑芝麻和白芝麻外,其余6种对照材料均未检测到荧光信号,黑白芝麻成分检测灵敏度达到0.1%.该方法具有灵敏度高、快速、简便的特点,可用于芝麻致敏原成分的定量检测.     

基于有序介孔材料的荧光探针及其应用

小分子荧光探针应用于检测污染物具有高选择性、高灵敏度和可视化等优点,但其检测效率低,难以与本体分离回收,对环境有一定污染。通过化学方法将小分子荧光探针负载到介孔材料表面,可以克服小分子荧光探针的不足,实现小分子荧光探针和介孔材料的优势互补。基于介孔材料的荧光探针不但兼具了小分子荧光探针的识别及清除功能,还可以通过调整介孔材料孔径大小和孔材料的成分实现更低浓度的检测,提高检测的灵敏度。本文首先综述了近年来基于介孔材料的不同类型荧光探针的研究进展,重点阐述荧光探针修饰的介孔材料在重金属离子检测、有机小分子检测、生物分子检测和阴离子检测等方面的应用,最后对基于介孔材料的荧光探针发展方向进行了展望。     

生物小分子巯基化合物荧光探针研究进展

细胞内的小分子巯基化合物在诸多生理过程中扮演重要角色.分子荧光探针具有灵敏度高、选择性好、生物相容性好、实时原位监测等优点.因此,构建可以选择性检测巯基化合物的荧光探针具有重要的生物学和医学意义.根据荧光探针与巯基化合物的反应类型总结了近几年来小分子巯基化合物荧光探针的设计策略和研究进展.     

基于纳米金探针和基因芯片的DNA检测新方法

运用荧光纳米金探针和基因芯片杂交建立一种新的DNA检测方法. 荧光纳米金探针表面标记有两种DNA探针: 一种为带有Cy5荧光分子的信号探针BP1, 起信号放大作用; 另一种为与靶DNA一部分互补的检测探针P532, 两种探针比例为5∶1. 当靶DNA存在时, 芯片上捕捉探针(与靶DNA的另一部分互补)通过碱基互补配对结合靶DNA, 将靶DNA固定于芯片上; 荧光纳米金探针通过检测探针与靶DNA及芯片结合, 在芯片上形成“三明治”复合结构, 最后通过检测信号探针上荧光分子的信号强度来确定靶DNA的量. 新方法检测灵敏度高, 可以检测浓度为1 pmol/L的靶DNA, 操作简单, 检测时间短. 通过改进纳米金探针的标记和优化杂交条件, 可进一步提高核酸检测的灵敏度, 这将在核酸检测方面具有重要的应用价值.     

检测一氧化碳分子荧光探针的研究进展

一氧化碳(CO)是一种重要的内源性气体递质分子,参与调节生命体的多种生理和病理过程.因此,选择性识别和高灵敏检测生物体内源CO具有十分重要的生物学和医学意义.荧光探针法具有选择性好、灵敏度高、适于高通量筛选,尤其是对生物样品无侵入性损伤,以及可实现实时原位检测等优势,因此,利用荧光探针技术检测细胞、组织和活体内CO浓度的变化是近年来研究热点之一.综述了近十年来CO荧光探针的研究进展,概述了相关荧光探针的设计理念、检测机理及生物应用,探讨了探针的结构和性能之间的关系,展望了CO荧光探针的发展趋势和应用前景.     

复合式蝎形引物实时定量检测端粒酶延伸产物

针对端粒酶延伸产物中靶基因序列的特殊性,开发了一种可产生荧光的复合式蝎形引物,该引物的5'端带有可特异性检测靶基因的探针序列,PCR阻断剂将其与引物序列连接.当复合式蝎形引物延伸,探针序列与同一分子内的靶基因杂交,荧光信号产生.运用该技术,建立了定量检测端粒酶延伸产物的实时荧光PCR方法.该法可在快速PCR循环条件下,对0.15～1.50×10³ amol/μL范围内的样品进行定量检测,线性相关系数R²=0.9992.该法操作简便,无需PCR后额外的检测步骤.     

基于1,8-萘酰亚胺的半胱氨酸荧光探针的合成及在生物成像方面的应用

设计合成了一种用于检测半胱氨酸的新型荧光探针乙二醛(N-羟乙基-1,8-二甲酰亚胺-4-萘基)单腙(NAD),该荧光探针对半胱氨酸表现出较高的灵敏度和选择性.当半胱氨酸加入NAD溶液中,会形成分子内氢键,抑制C■N的异构化,导致荧光增强.此外,探针NAD可应用于细胞内半胱氨酸的检测,表明该类型探针在生物检测应用方面具有较大的潜力.     

近红外荧光探针检测金属离子、小分子和生物大分子

荧光探针技术是近年来发展迅速的一种荧光分析方法,具有灵敏度高、选择性好、操作简便和响应迅速等特点,受到环境及生命科学领域的青睐.随着荧光探针技术的发展,近红外一区荧光探针由于具有发射波长长(600～ 900 nm)、对细胞损伤小、组织穿透性强和自发荧光背景低等优点,被广泛应用于细胞、组织等复杂生物体系中生物分子的检测、...     

利用实时荧光PCR鉴定小体鲟物种的快速方法

从小体鲟线粒体基因筛选出位于COⅠ(细胞色素氧化酶)基因中的一段保守序列,针对其设计引物,优化SYBR Green实时荧光PCR反应体系,建立了一种鉴定小体鲟的实时荧光PCR定性检测方法.该方法检测小体鲟DNA灵敏度为0.04mg/L.通过对采集和市售小体鲟鱼样品检测,该方法可检测出样品中的小体鲟成分.实验证明该方法可对血液样品和组织样品中的小体鲟进行种源鉴别.     

罗丹明B硅纳米粒子探针及其在蛋白芯片检测中的应用

本工作将罗丹明B分子通过共价结合的方式成功地包裹在二氧化硅纳米粒子中,制备的纳米粒子荧光强度和罗丹明B分子相比提高了1000倍.对此硅纳米荧光粒子进一步进行了链亲和素修饰,成功制备了可特异性结合生物素修饰蛋白的纳米荧光检测探针.以反相蛋白质芯片检测为模式,研究了此探针对微量蛋白的检测性能.实验中将不同微量浓度的人IgG固定于醛基修饰玻璃片表面,并加入生物素标记的抗人IgG,结果显示在800fg～100pg含量的微量蛋白检测中此纳米荧光探针具有良好的线性关系,最小蛋白检测量可达100fg.与商品化亲和素偶联cy3荧光探针对比分析发现,本方法制备的荧光探针对蛋白的检测灵敏度可提高8倍,且具有成本低,生物修饰简单等优点.     

Self-locked aptamer probe mediated cascade amplification strategy for highly sensitive and selective detection of protein and small molecule

In this work, a novel self-locked aptamer probe mediated cascade amplification strategy has been constructed for highly sensitive and specific detection of protein. First, the self-locked aptamer probe was designed with three functions: one was specific molecular recognition attributed to the aptamer sequence, the second was signal transduction owing to the transduction sequence, and the third was self-locking through the hybridization of the transduction sequence and part of the aptamer sequence. Then, the aptamer sequence specific recognized the target and folded into a three-way helix junction, leading to the release of the transduction sequence. Next, the 3’-end of this three-way junction acted as primer to trigger the strand displacement amplification (SDA), yielding a large amount of primers. Finally, the primers initiated the dual-exponential rolling circle amplification (DE-RCA) and generated numerous G-quadruples sequences. By inserting the fluorescent dye N-methyl mesoporphyrin IX (NMM), enhanced fluorescence signal was achieved. In this strategy, the self-locked aptamer probe was more stable to reduce the interference signals generated by the uncontrollable folding in unbounded state. Through the cascade amplification of SDA and DE-RCA, the sensitivity was further improved with a detection limit of 3.8 × 10⁻¹⁶ mol/L for protein detection. Furthermore, by changing the aptamer sequence of the probe, sensitive and selective detection of adenosine has been also achieved, suggesting that the proposed strategy has good versatility and can be widely used in sensitive and selective detection of biomolecules.     

Rapid Full-Cycle Technique to Control Adulteration of Meat Products: Integration of Accelerated Sample Preparation,Recombinase Polymerase Amplification,and Test-Strip Detection

Verifying the authenticity of food products is essential due to the recent increase in counterfeit meat-containing food products. The existing methods of detection have a number of disadvantages. Therefore, simple, cheap, and sensitive methods for detecting various types of meat are required. In this study, we propose a rapid full-cycle technique to control the chicken or pig adulteration of meat products, including 3 min of crude DNA extraction, 20 min of recombinase polymerase amplification (RPA) at 39 °C, and 10 min of lateral flow assay (LFA) detection. The cytochrome B gene was used in the developed RPA-based test for chicken and pig identification. The selected primers provided specific RPA without DNA nuclease and an additional oligonucleotide probe. As a result, RPA–LFA, based on designed fluorescein- and biotin-labeled primers, detected up to 0.2 pg total DNA per μL, which provided up to 0.001% w/w identification of the target meat component in the composite meat. The RPA–LFA of the chicken and pig meat identification was successfully applied to processed meat products and to meat after heating. The results were confirmed by real-time PCR. Ultimately, the developed analysis is specific and enables the detection of pork and chicken impurities with high accuracy in raw and processed meat mixtures. The proposed rapid full-cycle technique could be adopted for the authentication of other meat products.     

Rapid and sensitive detection of lower respiratory tract infections by stuffer‐free multiplex ligation‐dependent probe amplification

Lower respiratory tract infection is one of the most common infectious diseases. However, conventional methods for detecting infectious pathogens are time‐consuming, and generally have a limited impact on early therapeutic decisions. We previously reported a rapid and sensitive method for detecting such pathogens using stuffer‐free multiplex ligation‐dependent probe amplification coupled with high‐resolution CE‐SSCP. In this study, we report an application of this method to the detection of respiratory pathogens. As originally configured, this method was capable of simultaneously detecting seven bacterial species responsible for lower respiratory tract infections, but its detection limit and assay time were insufficient to provide useful information for early therapeutic decisions. To improve sensitivity and shorten assay time, we added a target‐specific preamplification step, improving the detection limit from 50 pg of genomic DNA to 500 fg. We further decreased time requirements by optimizing the hybridization step, enabling the entire assay to be completed within 7 h while maintaining the same detection limit. Taken together, these improvements enable the rapid detection of infectious doses of pathogens (i.e. a few dozen cells), establishing the strong potential of the refined method, particularly for aiding early treatment decisions.     

An improved electrochemiluminescence polymerase chain reaction method for highly sensitive detection of plant viruses

Recently, we have reported an electrochemiluminescence polymerase chain reaction (ECL-PCR) method for detection of genetically modified organisms. The ECL-PCR method was further improved in the current study by introducing a multi-purpose nucleic acid sequence that was specific to the tris(bipyridine) ruthenium (TBR) labeled probe, into the 5′ terminal of the primers. The method was applied to detect plant viruses. Conserved sequence of the plant viruses was amplified by PCR. The product was hybridized with a biotin labeled probe and a TBR labeled probe. The hybridization product was separated by streptavidin-coated magnetic beads, and detected by measuring the ECL signals of the TBR labeled. Under the optimized conditions, the experiment results show that the detection limit is 50 fmol of PCR products, and the signal-to-noise ratio is in excess of 14.6. The method was used to detect banana streak virus, banana bunchy top virus, and papaya leaf curl virus. The experiment results show that this method could reliably identity viruses infected plant samples. The improved ECL-PCR approach has higher sensitivity and lower cost than previous approach. It can effectively detect the plant viruses with simplicity, stability, and high sensitivity.     

Colorimetric assay for parallel detection of Cd2+, Ni2+ and Co2+ using peptide-modified gold nanoparticles

A colorimetric assay has been developed for parallel detection of Cd(2+), Ni(2+) and Co(2+) utilizing peptide-modified gold nanoparticles (P-AuNPs) as a sensing element based on its unique surface plasmon resonance properties. The functional peptide ligand, CALNNDHHHHHH, was self-assembled on gold nanoparticles (AuNPs) to produce P-AuNPs probe. The P-AuNPs probe could be used to simultaneously detect and showed different responses to the three ions Cd(2+), Ni(2+) and Co(2+) in an aqueous solution based on the aggregation-induced color change of AuNPs. The method showed good selectivity for Cd(2+), Ni(2+) and Co(2+) over other metal ions, and detection limit as low as 0.05 μM Cd(2+), 0.3 μM Ni(2+) or 2 μM Co(2+). To simultaneously (or parallel) detect the three metal ions coexisting in a sample, EDTA and imidazole were applied to mask Co(2+) and Ni(2+) for detecting Cd(2+), glutathione and EDTA were applied to mask Cd(2+) and Co(2+) for detecting Ni(2+), and glutathione and imidazole were applied to mask Cd(2+) and Ni(2+) for detecting Co(2+). Finally, the simple and cost-effective probe could be successfully applied for simultaneously detecting Cd(2+), Ni(2+), and Co(2+) in river water. Because this novel P-AgNPs-based probe design offers many advantages, including simplicity of preparation and manipulation compared with other methods that employ specific strategies, the sensing system shows potential application in the developing region for monitoring water quality.     

Detection of cashew nut DNA in spiked baked goods using a real-time polymerase chain reaction method

The detection of potentially allergenic foods, such as tree nuts, in food products is a major concern for the food processing industry. A real-time polymerase chain reaction (PCR) method was designed to determine the presence of cashew DNA in food products. The PCR amplifies a 67 bp fragment of the cashew 2S albumin gene, which is detected with a cashew-specific, dual-labeled TaqMan probe. This reaction will not amplify DNA derived from other tree nut species, such as almond, Brazil nut, hazelnut, and walnut, as well as 4 varieties of peanut. This assay was sensitive enough to detect 5 pg purified cashew DNA as well as cashew DNA in a spiked chocolate cookie sample containing 0.01% (100 mg/kg) cashew.     

Multiplex quantitative foodborne pathogen detection using high resolution CE-SSCP coupled stuffer-free multiplex ligation-dependent probe amplification

Sensitive multiplex detection methods for foodborne pathogens are important in controlling food safety, and detection of genetic markers is accepted to be one of the best tools for sensitive detection. Although CE technology offers great potential in terms of sensitive multiplex detection, the necessary amplification is confined to markers sharing common primers such as the 16S rRNA gene. For precise and sensitive detection, pathogen-specific genes are optimal markers. Although multiplex ligation-dependent probe amplification (MLPA) is appropriate for amplification of specific markers, the requirement for stuffers, to ensure length-dependent separation on CE, is a major obstacle in detection of foodborne pathogens. In the present study, we developed stuffer-free MLPA using high-resolution CE-SSCP to sensitively detect ten foodborne pathogens. The probe set for MLPA prior to CE-SSCP analysis was designed for species-specific detection. After careful optimization of each MLPA step, to ensure that CE-SSCP analysis was informative, we found that all ten pathogens could be reliably identified; the limits of detection were 0.5-5 pg of genomic DNA, and more than 100-fold increase could be quantitatively determined. Thus, MLPA-CE-SSCP is a sensitive and reliable technique for pathogen detection.     

A Ratiometric Fluorescence Probe for Selective Detection of ex vivo Methylglyoxal in Diabetic Mice

Accurate monitoring of methylglyoxal (MGO) at cell and living level was crucial to reveal its role in the pathogenesis of diabetes since MGO was closely related to diabetes. Herein, a ratiometric fluorescence strategy was constructed based on the capture probe 2,3-diaminonaphthalene (DAN) for the specific detection of MGO. Compared to the fluorescent probes with a single emission wavelength, the ratiometric mode by monitoring two emissions can effectively avoid the interference from the biological background, and provided additional self-calibration ability, which can realize accurate detection of MGO. The proposed method showed a good linear relationship in the range of 0–75 μm for MGO detection, and the limit of detection was 0.33 μm . DAN responded to MGO with good specificity and was successfully applied for detecting the ex vivo MGO level in plasma of KK−Ay mice as a type II diabetes model. Besides, the prepared DAN test strip can be visualized for rapid semi-quantitative analysis of MGO using the naked eye. Furthermore, human skin fibroblasts and HeLa cells were utilized for exogenous MGO imaging, and ex vivo MGO imaging was performed on tissues of KK−Ay mice. All results indicated that the DAN-based ratiometric fluorescence probe can be used as a potential method to detect the level of MGO, thus enabling indications for the occurrence of diabetes and its complications.