The anomalous shape of the cross section for the formation of SF3+ fragment ions produced by electron impact on SF6 revisited

The partial ionization cross section for the formation of SF(3) (+) fragment ions following electron impact on SF(6) is known to have a pronounced structure in the cross section curve slightly above 40 eV. We used the mass-analyzed ion kinetic energy (MIKE) scan technique to demonstrate the presence of a channel contributing to the SF(3) (+) partial ionization cross section that we attribute to the Coulomb explosion of doubly charged metastable SF(4) (2+) ions into two singly charged ions SF(3) (+) and F(+), with a threshold energy of about 45.5 eV. Thus the observed unusual shape of the SF(3) (+) partial ionization cross section is the result of two contributions, (i) the direct formation of SF(3) (+) fragment ions via dissociative ionization of SF(6) with a threshold energy of 22 eV and (ii) the Coulomb explosion of metastable SF(4) (2+) ions with a threshold energy of about 45.5 eV. A detailed analysis of the MIKE spectrum reveals an average kinetic energy release of about 5 eV in the Coulomb explosion of the SF(4) (2+) ions with evidence of a second channel corresponding to an average kinetic energy release of about 1.1 eV.     

A model for solvated ion emission from electrospray droplets

A model is presented which shows that the energy required to emit small singly charged and large multiply charged (protein) solvated ions from electrospray droplets can be considerably lower than those predicted by earlier models. By allowing the droplet surface to distort in reaction to the emerging ion, a more nuanced picture of the ion emission mechanism appears, one that covers the range from pure ion evaporation (PIE) for small ions to what may be termed activated pseudo-Rayleigh ion release (PRIR), a mechanism that yields charge states nearly indistinguishable from the charge residue model (CRM), for large ions. Predictions based on this model are qualitatively consistent with many experimentally observed trends.     

Kinetic energy release in ionic fragmentations: Use as an ion structure probe

The kinetic energy released in unimolecular reactions, as measured from the width of the corresponding metastable peak, shows only a small dependence on such parameters as source temperature, ion-source residence time and ion acceleration voltage. Similarly, fragmenting ions generated from different members of an homologous series of molecular ions have been found to release the same kinetic energy and hence do not exhibit a degrees-of-freedom effect analogous to that for metastable abundances. In general, molecular ions formed by electron-impact have been found to release slightly less kinetic energy on fragmentation than the corresponding ions formed via a fragmentation sequence. These observations suggest that kinetic energy release is a useful method of structural characterization of metastable ions; while increase in the average internal energies of the ions sample lead to larger energy releases, this effect is usually small. The use of a very narrow energy resolving (β) slit and a procedure in which the metastable peak width is extrapolated to zero slit width has been found to improve the accuracy of measurement of the kinetic energy release, particularly when the metastable and main beam peak widths are of comparable magnitude.     

Electron Induced Dissociation of Singly Deprotonated Peptides

Dissociation of singly charged species is more challenging compared with that of multiply charged precursor ions because singly charged ions are generally more stable. In collision activated dissociation (CAD), singly charged ions also gain less kinetic energy in a fixed electric field compared with multiply charged species. Furthermore, ion–electron and ion–ion reactions that frequently provide complementary and more extensive fragmentation compared with CAD typically require multiply charged precursor ions. Here, we investigate electron induced dissociation (EID) of singly deprotonated peptides and compare the EID fragmentation patterns with those observed in negative ion mode CAD. Fragmentation induced upon electron irradiation and collisional activation is not specific and results in the formation of a wide range of product ions, including b-, y-, a-, x-, c-, and z-type ions. Characteristic amino acid side chain losses are detected in both techniques. However, differences are also observed between EID and CAD spectra of the same species, including formation of odd-electron species not seen in CAD, in EID. Furthermore, EID frequently results in more extensive fragmentation compared with CAD. For modified peptides, EID resulted in retention of sulfonation and phosphorylation, allowing localization of the modification site. The observed differences are likely due to both vibrational and electronic excitation in EID, whereas only the former process occurs in CAD.     

Metastable atom‐activated dissociation mass spectrometry: leucine/isoleucine differentiation and ring cleavage of proline residues

Extensive backbone fragmentation resulting in a‐, b‐, c‐, x‐, y‐ and z‐type ions is observed of singly and doubly charged peptide ions through their interaction with a high kinetic energy beam of argon or helium metastable atoms in a modified quadrupole ion trap mass spectrometer. The ability to determine phosphorylation‐sites confirms the observation with previous reports and we report the new ability to distinguish between leucine and isoleucine residues and the ability to cleave two covalent bonds of the proline ring resulting in a‐, b‐, x‐, y‐, z‐ and w‐type ions. The fragmentation spectra indicate that fragmentation occurs through nonergodic radical ion chemistry akin to electron capture dissociation (ECD), electron transfer dissociation (ETD) and electron ionization dissociation mechanisms. However, metastable atom‐activated dissociation mass spectrometry demonstrates three apparent benefits to ECD and ETD: (1) the ability to fragment singly charged precursor ions, (2) the ability to fragment negatively charged ions and (3) the ability to cleave the proline ring that requires the cleavage of two covalent bonds. Helium metastable atoms generated more fragment ions than argon metastable atoms for both substance P and bradykinin regardless of the precursor ion charge state. Reaction times less than 250 ms and efficiencies approaching 5% are compatible with on‐line fragmentation, as would be desirable for bottom‐up proteomics applications. Copyright © 2009 John Wiley & Sons, Ltd.     

Use of metastable peak shapes in determining ring size in cyclic rearrangements in the mass spectrometer

A general method is described in which the mechanism of a reaction occurring in the ion source is inferred from the kinetic energy release accompanying further fragmentation of metastable product ions. In several cases the probe reaction occurred competitively by two mechanisms, and if high energy resolution is available this allows the detailed metastable peak shapes and not merely the average kinetic energy released, to be used to characterize the product ion formed in the fast (ion source) reaction. It is found that most substituted benzaldoxime O-methyl ethers undergo HCN elimination via a five-centered methoxyl transfer in the ion source, but that the p-methoxy substituted compound reacts through both a four- and a five-membered cyclic intermediate. The slow reactions of the corresponding metastable ions occur predominantly through a four-centered transition state in the p-methoxy compound and probably through both four- and five-membered intermediates for the less strongly electron donating substituents. The fraction of the excess energy of the products is higher than expected from a consideration of energy partitioning data for other systems involving activated complexes of comparable tightness.     

Two ion/ion charge inversion steps to form a doubly protonated peptide from a singly protonated peptide in the gas phase

An approach is described to increase the degree of protonation of a polypeptide ion in the gas phase. Sequential charge inversion reactions involving the reactions of oppositely charged ions are used to yield a net increase in ion charge. The approach is illustrated here with the conversion of singly protonated bradykinin to doubly protonated bradykinin. The first step involves conversion of the singly protonated peptide to the singly deprotonated peptide via reactions with multiply charged anions derived from carboxylate-terminated dendrimers. Some of the singly deprotonated peptide was then converted to doubly protonated peptide via reactions with multiply charged cations derived from amino-terminated dendrimers. The overall approach is illustrative of a general strategy for increasing the absolute charge states of large ions in the gas phase.     

One- and two-dimensional translational energy distributions in the iodine-loss dissociation of 1,2-C2H4I2+ and 1,3-C3H6I2+: what does this mean?

Threshold photoelectron photoion coincidence (TPEPICO) has been used to study the sequential photodissociation reaction of internal energy selected 1,2-diiodoethane cations: C(2)H(4)I(2)(+) → C(2)H(4)I(+) + I → C(2)H(3)(+) + I + HI. In the first I-loss reaction, the excess energy is partitioned between the internal energy of the fragment ion C(2)H(4)I(+) and the translational energy. The breakdown diagram of C(2)H(4)I(+) to C(2)H(3)(+), i.e., the fractional ion abundances below and above the second dissociation barrier as a function of the photon energy, yields the internal energy distribution of the first daughter, whereas the time-of-flight peak widths yield the released translational energy in the laboratory frame directly. Both methods indicate that the kinetic energy release in the I-loss step is inconsistent with the phase space theory (PST) predicted two translational degrees of freedom, but is well-described assuming only one translational degree of freedom. Reaction path calculations partly confirm this and show that the reaction coordinate changes character in the dissociation, and it is, thus, highly anisotropic. For comparison, data for the dissociative photoionization of 1,3-diiodopropane are also presented and discussed. Here, the reaction coordinate is expected to be more isotropic, and indeed the two degrees of freedom assumption holds. Characterizing kinetic energy release distributions beyond PST is crucial in deriving accurate dissociative photoionization onset energies in sequential reactions. On the basis of both experimental and theoretical grounds, we also suggest a significant revision of the 298 K heat of formation of 1,2-C(2)H(4)I(2)(g) to 64.5 ± 2.5 kJ mol(-1) and that of CH(2)I(2)(g) to 113.5 ± 2 kJ mol(-1) at 298 K.     

The fragmentation of metastable NH+3 ions and isotopic analogs: an example of tunneling through a rotational barrier

The fragmentation of metastable NH⁺₃ ions and isotopic analogs via the reaction NH⁺₃ → NH⁺₂ + H has been investigated using mass analysed ion kinetic energy spectrometry (MIKES). Kinetic energy release distributions and the metastable intensity were measured as a function of ion source temperature. Both the average kinetic energy release and the metastable intensity increase with ion source temperature. The data are consistent with the metastable reaction arising from tunneling through a rotational barrier. The experimental data are compared with the predictions of a tunneling model.     

The fundamentals of applying electrospray ionization mass spectrometry to low mass poly(methyl methacrylate) polymers

Electrospray ionization (ESI) is capable of ionizing many soluble polymers. The ESI spectra are complex because of overlap of the multiply charged ions of the oligomer distribution, causing current computer transform programs to fail. However, it is possible to determine the origin of the multiply charged ions, making it feasible to write a program designed to transform ESI polymer spectra. To assess the value of such a program for polymer analysis, isolated monodisperse methyl methacrylate (MMA) oligomers (25 and 50 repeat units) were used to determine molar signal response and propensity for fragmentation. The sum of the peak areas for the multiply charged MMA 50-mer was found to be only about 66% of the summed peak areas for the 25-mer for the same molar concentration. However, conversion of the multiply charged peak areas to the singly charged representations, with peak area compression taken into account, gave equal signal responses for the 25-and 50-mers. Signal response variations due to the tacticity of the MMA oligomers were not observed. Fragmentation of the MMA oligomers also was shown not to occur under normal ESI conditions. Therefore, transformation of the polymer spectra to the singly charged molecular ion distribution should allow accurate calculation of average molecular weights, polydispersity, end group mass, and repeat unit mass.     

Mass analysis of overlapping ion kinetic energy peaks arising from charge separation in dications

A triple-sector instrument of reversed geometry, BEQQ, has been employed to resolve overlapping ion kinetic energy peaks arising from charge separation of metastable dications. Separation was achieved through mass resolution of the dication in the magnetic sector and of the singly charged product ion of greater mass in the quadrupole mass filter accompanied by energy resolution with the electric sector; the electric sector was scanned to cover the complete range of each charge separation peak. Two overlapping ion kinetic energy peaks arising from charge separation of the diphenylenimine dication and up to four overlapping ion kinetic peaks arising from charge separations of dications arising from benzene-1,3,5-d₃ have been resolved. The kinetic energy releases have been calculated in each case. Enhanced z-discrimination is observed with the final stage of mass analysis.     

Primary and secondary locations of charge sites in angiotensin II (M + 2H)2+ ions formed by electrospray ionization

High-energy tandem mass spectrometry and molecular dynamics calculations are used to determine the locations of charge in metastably decomposing (M + 2H)2+ ions of human angiotensin II. Charge-separation reactions provide critical information regarding charge sites in multiple charged ions. The most probable kinetic energy released (Tm.p.) from these decompositions are obtained using kinetic energy release distributions (KERDs) in conjunction with MS/MS (MS2), MS/MS/MS (MS3), and MS/MS/MS/MS (MS4) experiments. The most abundant singly and doubly charged product ions arise from precursor ion structures in which one proton is located on the arginine (Arg) side chain and the other proton is located on a distal peptide backbone carbonyl oxygen. The MS3 KERD experiments show unequivocally that neither the N-terminal amine nor the aspartic acid (Asp) side chain are sites of protonation. In the gas phase, protonation of the less basic peptide backbone instead of the more proximal and basic histidine (His) side chain is favored as a result of reduced coulomb repulsion between the two charge sites. The singly and doubly charged product ions of lesser abundance arise from precursor ion structures in which one proton is located on the Arg side chain and the other on the His side chain. This is demonstrated in the MS3 and MS4 mass-analyzed ion kinetic energy spectrometry experiments. Interestingly, (b7" + OH)2+ product ions, like the (M + 2H)2+ ions of angiotensin II, are observed to have at least two different decomposing structures in which charge sites have a primary and secondary location.     

Characterization of laser ablation and ionization in helium and argon: A comparative study by time-of-flight mass spectrometry

Laser ablation and ionization in ambient helium and argon gases were studied by multiple-stage time-of-flight mass spectrometry. Measurements made at different gas pressures indicated that there exists an optimal pressure for adequately cooling energetic ions and reducing multiply charged ions that are higher for He than for Ar. The temporal distributions of ions were compared at various laser fluences and gas pressures, and the broad distributions for He could be ascribed to elastic scattering and thermodynamic processes. The diffusion of ions in He resulted in a longer delay before the instrument registered its maximal signal. Ions with different masses were observed to have the same kinetic energies in He, which was confirmed using the SIMION software, while ion movement was hydrodynamically controlled in Ar. The velocities of singly and doubly charged ions were also studied, and doubly charged ions showed much higher kinetic energy because of their frontal location in the plasma expansion.     

Charge Transfer and Metastable Ion Dissociation of Multiply Charged Molecular Cations Observed by Using Reflectron Time-of-Flight Mass Spectrometry

A multiply charged molecule expands the range of a mass window and is utilized as a precursor to provide rich sequence coverage; however, reflectron time-of-flight mass spectrometer has not been well applied to the product ion analysis of multiply charged precursor ions. Here, we demonstrate that the range of the mass-to-charge ratio of measurable product ions is limited in the cases of multiply charged precursor ions. We choose C₆F₆ as a model molecule to investigate the reactions of multiply charged molecular cations formed in intense femtosecond laser fields. Measurements of the time-of-flight spectrum of C₆F₆ by changing the potential applied to the reflectron, combined with simulation of the ion trajectory, can identify the species detected behind the reflectron as the neutral species and/or ions formed by the collisional charge transfer. Moreover, the metastable ion dissociations of doubly and triply charged C₆F₆ are identified. The detection of product ions in this manner can diminish interference by the precursor ion. Moreover, it does not need precursor ion separation before product ion analysis. These advantages would expand the capability of mass spectrometry to obtain information about metastable ion dissociation of multiply charged species.     

Multiply charged cluster ions of Ar,Kr, Xe,N2, O2, CO2, SO2 and NH3: Production mechanism,appearance size and appearance energy

Clusters of Ar, Kr, Xe, N₂, O₂, CO₂, SO₂ and NH₃ formed by supersonic nozzle expansion have been studied by electron impact ionization mass spectrometry (up to 15000 amu). Besides mass spectra of singly charged ions showing the characteristic anomalous distributions, we have in particular investigated the properties of multiply charged cluster ions. Critical appearance sizes of doubly and triply charged cluster ions, n₂ and n₃ respectively, found in the present study confirm recent theoretical predictions about n₃/n₂ and their dependence on the properties of the cluster constituents. The appearance energies of multiply charged cluster ions determined are shifted way below the appearance energies of the respective monomer ions. These huge red shifts together with the observed linear threshold laws and large maximum ionization efficiencies indicate that multiply charged cluster ions are produced by sequential single ionization events of one incoming electron at different cluster sites. Furthermore, we have also obtained for the first time clear evidence that (for electron energies above the appearance energy of doubly charged ions) an appreciable amount of singly charged (also fragment) ions is produced via Coulomb explosion of unstable doubly charged ions in the ion source.     

Performance and Attributes of Liquid Chromatography–Mass Spectrometry with Targeted Charge Separation in Quantitative Analysis of Therapeutic Peptides

Herein we describe a new method, targeted enhanced multiply charged scans (tEMC), for the quantification of therapeutic peptides in tandem mass spectrometry on the linear ion trap mass spectrometer. Therapeutic peptides with chain lengths between eight and 39 amino acid residues and charge states from 2+ to 6+ were used to evaluate and illustrate the method which relies on the ability to separate ions trapped in a linear ion trap according to their charges. In particular, interference from singly charged ions on multiply charged ions can be effectively minimized. The method requires optimization of relatively few parameters, the most important of which being the exit lens barrier (EXB) voltage, thereby offering substantial time saving in a high-throughput quantification environment that currently relies on selected reaction monitoring.     

Evolution of instrumentation for the study of gas-phase ion/ion chemistry via mass spectrometry

The scope of gas-phase ion/ion chemistry accessible to mass spectrometry is largely defined by the available tools. Due to the development of novel instrumentation, a wide range of reaction phenomenologies has been noted, many of which have been studied extensively and exploited for analytical applications. This perspective presents the development of mass spectrometry-based instrumentation for the study of the gas-phase ion/ion chemistry in which at least one of the reactants is multiply charged. The instrument evolution is presented within the context of three essential elements required for any ion/ion reaction study: the ionization source(s), the reaction vessel or environment, and the mass analyzer. Ionization source arrangements have included source combinations that allow for reactions between multiply charged ions of one polarity and singly charged ions of opposite polarity, arrangements that enable the study of reactions of multiply charged ions of opposite polarity and, most recently, arrangements that allow for ion formation from more than two ion sources. Gas-phase ion/ion reaction studies have been performed at near atmospheric pressure in flow reactor designs and within electrodynamic ion traps operated in the mTorr range. With ion trap as a reaction vessel, ionization and reaction processes can be independently optimized and ion/ion reactions can be implemented within the context of MSn experiments. Spatial separation of the reaction vessel from the mass analyzer allows for the use of any form of mass analysis in conjunction with ion/ion reactions. Time-of-flight mass analysis, for example, has provided significant improvements in mass analysis figures of merit relative to mass filters and ion traps.     

The scope of metastable peak observations

This short review focuses attention upon the present status of metastable ion studies with emphasis upon the relationship between metastable peak shapes, ion structur and fragmentation mechanisms. Some recommendations are made concerning nomenclature and the reporting of observations on Gaussian-type metastable peaks. Experimental methods for recording relative abundances of metastable peaks are critically appraised. The relationship between metastable ion phenomena and isomerization of gaseous ions is reviewed with particular attention drawn to the effect of rate-determining isomerizations. The shapes of Gaussian-type metastable peaks are discussed in some detail and selected examples from recent studies are used to show that such peaks may, by appropriate experiments, be separated into two Gaussian-type components thus revealing new features of the fragmentation reaction. The magnitude and significance of released kinetic energies, T, are considered and it is stated that few conclusions can be drawn from the evaluation of T alone; the importance of accurate thermochemical data as an aid to understanding and interpreting kinetic energy release data is emphasized. Other topics discussed include composite metastable peaks, metastable peaks produced in chemical ionization and field ionization and the partitioning of internal energy of the fragmenting ion into translational degrees of freedom of the products, for reactions with and without a reverse energy barrier.     

Kinetic energy release in metastable ions from β-keto esters

The kinetic energy release, T, in metastable ion transitions accompanying the main fragmentation reaction by electron impact has been determined for methyl-, ethyl- and propyl-pivaloyl acetates. The measurements have been made using a MAT 311 mass spectrometer with inverse Nier–Johnson geometry, by high voltage and mass-analysed ion kinetic energy methods. The peak width at 50% height has been used in the calculations. The T values and the shape of the metastable peaks are correlated to reaction types and to the alcohol radical.